4.0:Information of module
SIZ
In comparison with 2hr transitory KNO3 LRCR cell help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 2.174e-10
GO:0061024 membrane organization BP 2.394e-10
GO:0044802 single-organism membrane organization BP 3.464e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 4.283e-16
GO:0019684 photosynthesis, light reaction BP 8.794e-15
GO:0015994 chlorophyll metabolic process BP 4.485e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SIZ		 Log2 signal ratio
2hr transitory KNO3 LRCR cell
1 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 1.102 0.038
2 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.804 0.033
3 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 0.730 -0.058
4 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.696 0.106
5 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.655 -0.001
6 250942_at AT5G03350 [Legume lectin family protein] 0.613 0.202
7 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 0.602 -0.002
8 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.580 -0.275
9 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.557 -0.093
10 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.487 0.015
11 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.487 -0.043
12 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] 0.466 0.166
13 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.465 -0.112
14 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.452 -0.287
15 257206_at AT3G16530 [Legume lectin family protein] 0.437 -0.096
16 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.432 0.131
17 258178_at AT3G21680 unknown 0.430 -0.070
18 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.426 -0.166
19 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.413 0.006
20 260472_at AT1G10990 unknown 0.406 -0.039
21 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] 0.403 0.079
22 248322_at AT5G52760 [Copper transport protein family] 0.401 0.068
23 265327_at AT2G18210 unknown 0.389 0.124
24 261221_at AT1G19960 unknown 0.388 0.225
25 249394_at AT5G40180 unknown 0.377 -0.100
26 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.365 0.008
27 248822_at AT5G47000 [Peroxidase superfamily protein] 0.363 0.103
28 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.362 0.042
29 252629_at AT3G44970 [Cytochrome P450 superfamily protein] 0.361 -0.320
30 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.355 0.007
31 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.348 -0.199
32 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.345 0.055
33 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 0.339 -0.025
34 259033_at AT3G09405 [Pectinacetylesterase family protein] 0.339 -0.069
35 245148_at AT2G45220 PME17, pectin methylesterase 17 0.338 -0.041
36 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.329 0.084
37 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 0.327 -0.151
38 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B 0.313 -0.103
39 264987_at AT1G27030 unknown 0.306 -0.143
40 246072_at AT5G20240 PI, PISTILLATA 0.291 0.034
41 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.285 0.028
42 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.281 0.017
43 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.277 -0.100
44 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.276 0.257
45 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.276 0.043
46 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.273 -0.046
47 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.272 0.092
48 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.272 -0.056
49 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 0.269 -0.029
50 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.269 -0.125
51 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 0.268 -0.014
52 259952_at AT1G71400 AtRLP12, receptor like protein 12, RLP12, receptor like protein 12 0.268 -0.024
53 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.261 0.083
54 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 0.257 -0.126
55 250142_at AT5G14650 [Pectin lyase-like superfamily protein] 0.256 -0.057
56 253112_at AT4G35970 APX5, ascorbate peroxidase 5 0.253 0.062
57 261958_at AT1G64500 [Glutaredoxin family protein] 0.252 -0.391
58 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.249 0.035
59 255945_at AT5G28610 unknown 0.247 0.141
60 247739_at AT5G59240 [Ribosomal protein S8e family protein] 0.246 0.001
61 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.244 0.040
62 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.242 -0.148
63 250610_at AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 0.241 0.131
64 262507_at AT1G11330 [S-locus lectin protein kinase family protein] 0.240 0.268
65 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.238 -0.048
66 265433_at AT2G20950 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.238 -0.076
67 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.237 0.052
68 247742_at AT5G58980 [Neutral/alkaline non-lysosomal ceramidase] 0.237 0.007
69 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 0.234 -0.150
70 256617_at AT3G22240 unknown 0.234 -0.035
71 260831_at AT1G06830 [Glutaredoxin family protein] 0.229 -0.038
72 258110_at AT3G14610 CYP72A7, cytochrome P450, family 72, subfamily A, polypeptide 7 0.229 -0.001
73 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 0.229 -0.164
74 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.228 -0.146
75 259481_at AT1G18970 GLP4, germin-like protein 4 0.228 -0.137
76 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.227 0.140
77 250472_at AT5G10210 unknown 0.227 0.089
78 264929_at AT1G60730 [NAD(P)-linked oxidoreductase superfamily protein] 0.226 -0.111
79 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.225 -0.091
80 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.223 0.073
81 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.222 -0.048
82 256548_at AT3G14770 AtSWEET2, SWEET2 0.221 -0.093
83 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.220 -0.379
84 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.219 -0.296
85 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 0.217 -0.306
86 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.217 -0.037
87 247189_at AT5G65390 AGP7, arabinogalactan protein 7 0.213 -0.049
88 245193_at AT1G67810 SUFE2, sulfur E2 0.209 -0.204
89 246260_at AT1G31820 PUT1, POLYAMINE UPTAKE TRANSPORTER 1 0.208 -0.234
90 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.549 0.094
91 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] -0.410 0.014
92 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.371 -0.008
93 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.358 0.009
94 251620_at AT3G58060 [Cation efflux family protein] -0.334 -0.037
95 248394_at AT5G52070 [Agenet domain-containing protein] -0.334 -0.099
96 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.320 -0.027
97 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -0.304 -0.012
98 264958_at AT1G76960 unknown -0.303 0.119
99 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.293 0.045
100 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 -0.281 0.030
101 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.280 0.250
102 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.274 0.088
103 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor -0.271 0.079
104 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.270 0.240
105 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.266 -0.079
106 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 -0.262 0.063
107 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] -0.261 0.107
108 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.258 0.002
109 245420_at AT4G17410 [DWNN domain, a CCHC-type zinc finger] -0.257 0.102
110 259281_at AT3G01140 AtMYB106, myb domain protein 106, MYB106, myb domain protein 106, NOK, NOECK -0.254 0.085
111 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.251 0.020
112 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.244 0.005
113 252004_at AT3G52780 ATPAP20, PAP20 -0.239 -0.135
114 267204_at AT2G31050 [Cupredoxin superfamily protein] -0.239 -0.155
115 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.237 0.095
116 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 -0.237 -0.230
117 260771_at AT1G49160 WNK7 -0.234 0.181
118 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 -0.233 -0.050
119 251102_at AT5G01690 ATCHX27, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 27, CHX27, cation/H+ exchanger 27 -0.232 -0.070
120 257451_at AT1G05690 BT3, BTB and TAZ domain protein 3 -0.231 -0.001
121 260717_at AT1G48120 [hydrolases] -0.229 -0.010
122 253084_at AT4G36260 SRS2, SHI RELATED SEQUENCE 2, STY2, STYLISH 2 -0.228 0.613
123 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.226 -0.077
124 262388_at AT1G49320 unknown -0.225 -0.001
125 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.218 -0.076
126 251856_at AT3G54720 AMP1, ALTERED MERISTEM PROGRAM 1, AtAMP1, COP2, CONSTITUTIVE MORPHOGENESIS 2, HPT, HAUPTLING, MFO1, Multifolia, PT, PRIMORDIA TIMING -0.214 0.177
127 249645_at AT5G36910 THI2.2, thionin 2.2 -0.214 0.020
128 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL -0.213 0.035
129 249069_at AT5G44010 unknown -0.213 0.109
130 260156_at AT1G52880 ANAC018, Arabidopsis NAC domain containing protein 18, ATNAM, NAM, NO APICAL MERISTEM, NARS2, NAC-REGULATED SEED MORPHOLOGY 2 -0.212 -0.022
131 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.210 -0.022
132 247118_at AT5G65890 ACR1, ACT domain repeat 1 -0.207 0.044
133 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC -0.206 -0.059
134 259846_at AT1G72140 [Major facilitator superfamily protein] -0.205 -0.044
135 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.204 -0.115
136 262347_at AT1G64110 DAA1, DUO1-activated ATPase 1 -0.204 -0.041
137 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 -0.202 -0.189
138 267547_at AT2G32670 ATVAMP725, vesicle-associated membrane protein 725, VAMP725, vesicle-associated membrane protein 725 -0.199 0.143
139 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.198 -0.047
140 261336_at AT1G44790 [ChaC-like family protein] -0.197 0.312
141 261074_at AT1G07290 GONST2, golgi nucleotide sugar transporter 2 -0.195 -0.139
142 256021_at AT1G58270 ZW9 -0.194 0.053
143 259350_at AT3G05140 RBK2, ROP binding protein kinases 2 -0.194 0.080
144 249895_at AT5G22500 FAR1, fatty acid reductase 1 -0.193 0.187
145 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.187 0.026
146 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 -0.186 0.198
147 262214_at AT1G74820 [RmlC-like cupins superfamily protein] -0.182 0.095
148 252304_at AT3G49230 unknown -0.179 -0.100
149 250483_at AT5G10300 AtHNL, ATMES5, ARABIDOPSIS THALIANA METHYL ESTERASE 5, HNL, HYDROXYNITRILE LYASE, MES5, methyl esterase 5 -0.176 0.010
150 267025_at AT2G38350 unknown -0.176 -0.191
151 254745_at AT4G13460 SDG22, SETDOMAIN GROUP 22, SET22, SUVH9, SU(VAR)3-9 homolog 9 -0.175 -0.001
152 254543_at AT4G19810 ChiC, class V chitinase -0.174 -0.101
153 251302_at AT3G61970 NGA2, NGATHA2 -0.174 0.021
154 262067_at AT1G80060 [Ubiquitin-like superfamily protein] -0.173 0.059
155 249856_at AT5G22980 scpl47, serine carboxypeptidase-like 47 -0.172 0.042
156 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 -0.172 0.024
157 267535_at AT2G41940 ZFP8, zinc finger protein 8 -0.171 0.139
158 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] -0.170 0.005
159 254008_at AT4G26380 [Cysteine/Histidine-rich C1 domain family protein] -0.170 0.270
160 249677_at AT5G35970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.168 0.021
161 246568_at AT5G14960 DEL2, DP-E2F-like 2, E2FD, E2L1 -0.167 -0.079
162 246757_at AT5G27940 WPP3, WPP domain protein 3 -0.164 0.165
163 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 -0.164 0.022
164 255909_at AT1G18040 AT;CDCKD;3, CYCLIN-DEPENDENT KINASE D1;3, CAK2AT, CDKD1;3, cyclin-dependent kinase D1;3 -0.163 0.141
165 254450_at AT4G21080 AtDOF4.5, DOF4.5, DNA-binding with One Finger 4.5 -0.163 0.037
166 246118_at AT5G20340 BG5, beta-1,3-glucanase 5 -0.163 0.127
167 254300_at AT4G22780 ACR7, ACT domain repeat 7 -0.162 0.039
168 264843_at AT1G03400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.161 0.231
169 260583_x_at AT2G47220 unknown -0.156 0.054
170 245901_at AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 -0.156 -0.123
171 260843_at AT1G29060 [Target SNARE coiled-coil domain protein] -0.153 -0.025
172 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.152 -0.101
173 265234_at AT2G07721 unknown -0.152 0.009
174 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.151 -0.113
175 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 -0.150 0.063
176 266853_at AT2G26790 [Pentatricopeptide repeat (PPR) superfamily protein] -0.149 0.021
177 264208_at AT1G22760 PAB3, poly(A) binding protein 3 -0.149 -0.102