4.0:Information of module
AB
In comparison with Red Light 45min  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0032787 monocarboxylic acid metabolic process BP 1.438e-04
GO:0043436 oxoacid metabolic process BP 5.062e-04
GO:0006082 organic acid metabolic process BP 5.202e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0031497 chromatin assembly BP 2.051e-03
GO:0006323 DNA packaging BP 2.323e-03
GO:0006644 phospholipid metabolic process BP 3.035e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
AB		 Log2 signal ratio
Red Light 45min
1 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.296 0.043
2 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.277 0.042
3 252629_at AT3G44970 [Cytochrome P450 superfamily protein] 0.259 -0.026
4 263769_at AT2G06390 transposable element gene 0.247 -0.073
5 257271_at AT3G28007 AtSWEET4, SWEET4 0.230 -0.011
6 258178_at AT3G21680 unknown 0.208 -0.015
7 261366_at AT1G53100 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.201 0.017
8 266444_at AT2G43150 [Proline-rich extensin-like family protein] 0.197 -0.005
9 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.196 0.248
10 264562_at AT1G55760 [BTB/POZ domain-containing protein] 0.194 0.014
11 255028_at AT4G09890 unknown 0.192 0.079
12 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.186 0.020
13 256912_at AT3G23850 unknown 0.186 -0.039
14 267472_at AT2G02850 ARPN, plantacyanin 0.185 0.061
15 247369_at AT5G63340 unknown 0.184 -0.080
16 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] 0.179 0.032
17 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.177 0.032
18 252936_at AT4G39160 [Homeodomain-like superfamily protein] 0.176 -0.005
19 257512_at AT1G35250 ALT2, acyl-lipid thioesterase 2 0.173 0.018
20 263109_at AT1G65180 [Cysteine/Histidine-rich C1 domain family protein] 0.169 -0.063
21 266729_at AT2G03130 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] 0.164 -0.030
22 248356_at AT5G52350 ATEXO70A3, exocyst subunit exo70 family protein A3, EXO70A3, exocyst subunit exo70 family protein A3 0.163 -0.007
23 249384_at AT5G39890 unknown 0.163 0.024
24 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.161 0.005
25 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.160 -0.018
26 266222_at AT2G28780 unknown 0.160 0.018
27 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 0.156 0.091
28 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.155 0.000
29 246825_at AT5G26260 [TRAF-like family protein] 0.154 0.010
30 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.152 -0.046
31 264392_at AT1G11900 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.151 -0.002
32 265349_at AT2G22610 [Di-glucose binding protein with Kinesin motor domain] 0.149 0.002
33 254634_at AT4G18650 [transcription factor-related] 0.147 -0.015
34 246868_at AT5G26010 [Protein phosphatase 2C family protein] 0.146 -0.034
35 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase 0.146 0.025
36 248660_at AT5G48650 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] 0.146 0.040
37 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.144 0.028
38 256532_at AT1G33350 [Pentatricopeptide repeat (PPR) superfamily protein] 0.144 -0.001
39 249645_at AT5G36910 THI2.2, thionin 2.2 0.144 -0.099
40 257836_at AT3G25182 0.142 -0.002
41 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 0.141 -0.042
42 246725_at AT5G29040 [pseudogene] 0.139 0.032
43 261960_at AT1G36550 [similar to retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] (GB:ABA98367.2)] 0.137 -0.028
44 261504_at AT1G71692 AGL12, AGAMOUS-like 12, XAL1, XAANTAL1 0.137 0.000
45 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.137 0.179
46 251750_at AT3G55710 [UDP-Glycosyltransferase superfamily protein] -0.387 0.016
47 264707_at AT1G09730 [Cysteine proteinases superfamily protein] -0.384 0.012
48 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.369 -0.036
49 260090_at AT1G73310 scpl4, serine carboxypeptidase-like 4 -0.301 0.050
50 250467_at AT5G10100 TPPI, trehalose-6-phosphate phosphatase I -0.273 -0.016
51 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.271 -0.050
52 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] -0.247 -0.014
53 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.246 0.009
54 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.245 0.053
55 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] -0.241 -0.051
56 259281_at AT3G01140 AtMYB106, myb domain protein 106, MYB106, myb domain protein 106, NOK, NOECK -0.226 -0.050
57 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.219 -0.056
58 251394_at AT3G60900 FLA10, FASCICLIN-like arabinogalactan-protein 10 -0.217 -0.065
59 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 -0.211 0.015
60 251132_at AT5G01200 [Duplicated homeodomain-like superfamily protein] -0.208 -0.031
61 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.207 0.006
62 250045_at AT5G17700 [MATE efflux family protein] -0.206 -0.017
63 254043_at AT4G25990 CIL -0.202 -0.024
64 247068_at AT5G66800 unknown -0.199 -0.036
65 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.197 -0.017
66 246254_at AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 -0.196 0.072
67 264997_at AT1G67220 ATHPCAT1, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 1, HAC02, HAC2, histone acetyltransferase of the CBP family 2 -0.192 -0.051
68 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.192 -0.097
69 245884_at AT5G09300 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] -0.191 -0.012
70 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.190 -0.041
71 257698_at AT3G12730 [Homeodomain-like superfamily protein] -0.189 -0.031
72 257184_at AT3G13090 ABCC6, ATP-binding cassette C6, ATMRP8, multidrug resistance-associated protein 8, MRP8, multidrug resistance-associated protein 8 -0.188 -0.036
73 263650_at AT1G04360 [RING/U-box superfamily protein] -0.186 -0.009
74 255306_at AT4G04740 ATCPK23, CPK23, calcium-dependent protein kinase 23 -0.183 0.045
75 263202_at AT1G05630 5PTASE13, inositol-polyphosphate 5-phosphatase 13, AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13 -0.182 0.034
76 253682_at AT4G29640 [Cytidine/deoxycytidylate deaminase family protein] -0.181 -0.044
77 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.180 -0.024
78 263177_at AT1G05540 unknown -0.177 -0.035
79 258589_at AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 -0.177 -0.048
80 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 -0.174 0.032
81 247511_at AT5G62040 BFT, brother of FT and TFL1 -0.171 -0.016
82 267387_at AT2G44440 AtEML4, EML4, EMSY-like 4 -0.168 -0.078
83 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.168 0.010
84 251245_at AT3G62090 PIF6, PHYTOCHROME-INTERACTING FACTOR 6, PIL2, phytochrome interacting factor 3-like 2 -0.167 -0.021
85 267412_at AT2G34940 BP80-3;2, binding protein of 80 kDa 3;2, VSR3;2, VACUOLAR SORTING RECEPTOR 3;2, VSR5, VACUOLAR SORTING RECEPTOR 5 -0.167 0.005
86 267622_at AT2G39690 unknown -0.167 -0.002
87 249586_at AT5G37840 unknown -0.165 -0.051
88 267636_at AT2G42110 unknown -0.164 -0.019
89 262429_at AT1G47520 [copia-like retrotransposon family, has a 3.3e-256 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] -0.164 -0.024