4.0:Information of module
Seedling-control POLYSOMESmRNA
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0071822 protein complex subunit organization BP 6.109e-09
GO:0006461 protein complex assembly BP 6.199e-09
GO:0070271 protein complex biogenesis BP 6.685e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010228 vegetative to reproductive phase transit... BP 6.334e-04
GO:0009651 response to salt stress BP 1.034e-03
GO:0016192 vesicle-mediated transport BP 1.621e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Seedling-control POLYSOMESmRNA		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 252877_at AT4G39630 unknown 0.218 0.015
2 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.214 -0.128
3 257969_at AT3G27520 unknown 0.192 0.047
4 257929_at AT3G16980 NRPB9A, NRPD9A, NRPE9A 0.186 -0.135
5 258782_at AT3G11750 FOLB1 0.182 -0.012
6 259171_at AT3G03590 [SWIB/MDM2 domain superfamily protein] 0.176 0.089
7 260112_at AT1G63310 unknown 0.173 -0.458
8 266684_at AT2G19720 rps15ab, ribosomal protein S15A B 0.171 -0.060
9 266049_at AT2G40780 [Nucleic acid-binding, OB-fold-like protein] 0.168 -0.025
10 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 0.167 -0.151
11 263829_at AT2G40435 unknown 0.163 -0.167
12 246582_at AT1G31750 [proline-rich family protein] 0.162 -0.024
13 252224_at AT3G49860 ARLA1B, ADP-ribosylation factor-like A1B, ATARLA1B, ADP-ribosylation factor-like A1B 0.159 -0.160
14 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.156 -0.066
15 264974_at AT1G27050 [homeobox protein 54 (HB54)] 0.155 0.495
16 264385_at AT1G12020 unknown 0.153 -0.032
17 258657_at AT3G09890 [Ankyrin repeat family protein] 0.147 -0.070
18 258576_at AT3G04230 [Ribosomal protein S5 domain 2-like superfamily protein] 0.144 -0.024
19 262703_at AT1G16510 SAUR41, SMALL AUXIN UPREGULATED 41 0.143 -0.102
20 249822_at AT5G23710 [DNA binding] 0.142 0.029
21 266950_at AT2G18910 [hydroxyproline-rich glycoprotein family protein] 0.137 -0.087
22 248632_at AT5G49010 EMB2812, EMBRYO DEFECTIVE 2812, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5 0.137 -0.185
23 264788_at AT2G17880 DJC24, DNA J protein C24 0.134 -0.116
24 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.134 -0.001
25 259894_at AT1G71430 unknown 0.132 0.010
26 247472_at AT5G62250 MAP65-9, microtubule-associated protein 65-9 0.131 0.086
27 267463_at AT2G33845 [Nucleic acid-binding, OB-fold-like protein] 0.131 0.039
28 260803_at AT1G78340 ATGSTU22, glutathione S-transferase TAU 22, GSTU22, glutathione S-transferase TAU 22 0.129 -0.097
29 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] 0.126 -0.108
30 258202_at AT3G13940 [DNA binding] 0.125 0.125
31 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.124 0.095
32 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] 0.120 -0.013
33 251809_at AT3G55600 [Membrane fusion protein Use1] 0.119 -0.043
34 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 0.118 -0.015
35 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 0.116 0.091
36 257792_at AT3G27080 TOM20-3, translocase of outer membrane 20 kDa subunit 3 0.116 0.014
37 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 0.113 0.089
38 250969_at AT5G02740 [Ribosomal protein S24e family protein] 0.112 -0.383
39 252457_at AT3G47180 [RING/U-box superfamily protein] 0.111 -0.098
40 252295_at AT3G49100 [Signal recognition particle, SRP9/SRP14 subunit] 0.111 0.067
41 255233_at AT4G05450 ATMFDX1, ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 1, MFDX1, mitochondrial ferredoxin 1 0.111 -0.090
42 262639_at AT1G62820 [Calcium-binding EF-hand family protein] 0.110 -0.044
43 253516_at AT4G31360 [selenium binding] 0.110 -0.119
44 254451_at AT4G21090 ATMFDX2, ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MFDX2, MITOCHONDRIAL FERREDOXIN 2 0.109 -0.138
45 257741_at AT3G27340 unknown -0.491 -0.075
46 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.460 -0.036
47 265847_at AT2G35750 unknown -0.409 -0.030
48 262010_at AT1G35612 [expressed protein] -0.407 -0.034
49 259209_at AT3G09160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.387 0.014
50 263007_at AT1G54260 [winged-helix DNA-binding transcription factor family protein] -0.351 0.024
51 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.320 -0.055
52 249824_at AT5G23380 unknown -0.309 0.014
53 248802_at AT5G47435 [formyltetrahydrofolate deformylase, putative] -0.298 -0.012
54 267397_at AT1G76170 [2-thiocytidine tRNA biosynthesis protein, TtcA] -0.298 -0.088
55 249006_at AT5G44660 unknown -0.251 -0.037
56 262291_at AT1G70790 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.250 -0.161
57 257554_at AT3G24890 ATVAMP728, VAMP728, vesicle-associated membrane protein 728 -0.244 0.030
58 252659_at AT3G44430 unknown -0.242 -0.070
59 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.237 -0.088
60 251307_at AT3G61200 [Thioesterase superfamily protein] -0.234 0.015
61 266811_at AT2G44850 unknown -0.228 0.015
62 251094_at AT5G01350 unknown -0.226 -0.001
63 266910_at AT2G45920 [U-box domain-containing protein] -0.218 -0.025
64 261969_at AT1G65950 [Protein kinase superfamily protein] -0.218 -0.169
65 247106_at AT5G66240 [Transducin/WD40 repeat-like superfamily protein] -0.213 0.045
66 255933_at AT1G12750 ATRBL6, RHOMBOID-like protein 6, RBL6, RHOMBOID-like protein 6 -0.208 -0.252
67 251403_at AT3G60300 [RWD domain-containing protein] -0.205 0.116
68 260054_at AT1G78130 UNE2, unfertilized embryo sac 2 -0.204 -0.017
69 259796_at AT1G64270 [Mutator-like transposase family, has a 1.0e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.204 -0.146
70 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 -0.202 0.103
71 248106_at AT5G55100 [SWAP (Suppressor-of-White-APricot)/surp domain-containing protein] -0.201 -0.026
72 261030_at AT1G17410 [Nucleoside diphosphate kinase family protein] -0.199 0.036
73 262533_at AT1G17090 unknown -0.198 0.106
74 253859_at AT4G27657 unknown -0.196 -0.150
75 248905_at AT5G46250 AtLARP6a, LARP6a, La related protein 6a -0.195 0.100
76 253361_at AT4G33100 unknown -0.195 0.009
77 247301_at AT5G63920 AtTOP3alpha, TOP3A, topoisomerase 3alpha -0.191 -0.081
78 247295_at AT5G64180 unknown -0.187 -0.470
79 257530_at AT3G03040 [F-box/RNI-like superfamily protein] -0.187 0.044
80 250586_at AT5G07630 [lipid transporters] -0.180 -0.035
81 251095_at AT5G01510 RUS5, ROOT UV-B SENSITIVE 5 -0.180 -0.011
82 255639_at AT4G00760 APRR8, pseudo-response regulator 8, PRR8, PSEUDO-RESPONSE REGULATOR 8 -0.178 0.056
83 262627_at AT1G06580 [Pentatricopeptide repeat (PPR) superfamily protein] -0.164 0.110
84 249273_at AT5G41850 [alpha/beta-Hydrolases superfamily protein] -0.164 0.056
85 251676_at AT3G57320 unknown -0.162 -0.368
86 256353_at AT1G55000 [peptidoglycan-binding LysM domain-containing protein] -0.160 -0.181
87 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.159 0.043