4.0:Information of module
0 h Attim 17-1 1
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019752 carboxylic acid metabolic process BP 3.014e-04
GO:0006534 cysteine metabolic process BP 3.438e-04
GO:0043436 oxoacid metabolic process BP 3.621e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010035 response to inorganic substance BP 3.061e-14
GO:0009415 response to water BP 5.202e-14
GO:1901700 response to oxygen-containing compound BP 6.294e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
0 h Attim 17-1 1		 Log2 signal ratio
bri1-116
1 260909_at AT1G02670 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.195 0.067
2 261466_at AT1G07690 unknown 0.186 0.093
3 248488_at AT5G51080 [RNase H family protein] 0.184 0.099
4 263230_at AT1G05670 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.183 0.012
5 265296_at AT2G14060 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.176 -0.392
6 260256_at AT1G74350 [Intron maturase, type II family protein] 0.169 0.068
7 251130_at AT5G01180 AtNPF8.2, ATPTR5, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, NPF8.2, NRT1/ PTR family 8.2, PTR5, peptide transporter 5 0.165 0.054
8 258248_at AT3G29140 unknown 0.161 0.256
9 253671_at AT4G29990 [Leucine-rich repeat transmembrane protein kinase protein] 0.160 0.109
10 258324_at AT3G22780 ATTSO1, TSO1, CHINESE FOR 'UGLY' 0.152 -0.047
11 248753_at AT5G47630 mtACP3, mitochondrial acyl carrier protein 3 0.149 0.095
12 249897_at AT5G22550 unknown 0.147 -0.294
13 261801_at AT1G30520 AAE14, acyl-activating enzyme 14 0.145 0.194
14 249816_at AT5G23880 ATCPSF100, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100, CPSF100, cleavage and polyadenylation specificity factor 100, EMB1265, EMBRYO DEFECTIVE 1265, ESP5, ENHANCED SILENCING PHENOTYPE 5 0.145 0.060
15 259797_at AT1G64410 unknown 0.142 0.150
16 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 0.141 -0.144
17 254280_at AT4G22756 ATSMO1-2, SMO1-2, sterol C4-methyl oxidase 1-2 0.140 0.064
18 247911_at AT5G57450 ATXRCC3, ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 (XRCC3), XRCC3, homolog of X-ray repair cross complementing 3 0.135 0.158
19 244905_at ATMG00680 ORF122C 0.134 0.067
20 253413_at AT4G33020 ATZIP9, ZIP9 0.132 0.062
21 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.131 -0.067
22 245520_at AT4G15870 ATTS1, terpene synthase 1, TS1, terpene synthase 1 0.131 -0.032
23 257133_at AT3G17190 unknown 0.127 0.075
24 256640_at AT3G32260 [Nucleic acid-binding proteins superfamily] 0.125 0.060
25 256685_at AT3G32100 unknown 0.121 0.026
26 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] 0.121 -0.007
27 247578_at AT5G61300 unknown 0.118 0.040
28 251530_at AT3G58520 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.116 0.003
29 253074_at AT4G36140 [disease resistance protein (TIR-NBS-LRR class), putative] 0.112 0.074
30 267091_at AT2G38185 APD1, ABERRANT POLLEN DEVELOPMENT 1 0.110 0.014
31 263974_at AT2G42720 [FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein] 0.110 0.038
32 257531_at AT3G07250 [nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein] 0.109 0.057
33 252732_at AT3G43140 transposable element gene 0.108 0.082
34 260437_at AT1G68380 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.104 0.047
35 254589_at AT4G18850 unknown 0.101 0.015
36 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 0.101 -0.171
37 257773_at AT3G29185 unknown 0.101 0.215
38 262276_at AT1G68700 unknown 0.100 0.120
39 248454_at AT5G51350 MOL1, MORE LATERAL GROWTH1 0.099 0.068
40 247547_at AT5G61360 unknown 0.098 0.029
41 261915_at AT1G65880 BZO1, benzoyloxyglucosinolate 1 0.097 0.100
42 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.096 0.034
43 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.095 -0.021
44 263052_at AT2G13430 unknown 0.094 0.016
45 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.093 0.011
46 256428_at AT3G11080 AtRLP35, receptor like protein 35, RLP35, receptor like protein 35 0.093 0.024
47 246662_at AT5G35290 unknown 0.093 0.006
48 245680_at AT1G56570 PGN, PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl 0.093 0.035
49 254401_at AT4G21300 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.093 0.111
50 258255_at AT3G26800 unknown 0.090 0.045
51 265694_at AT2G24440 [selenium binding] 0.090 0.063
52 265140_at AT1G51320 [F-box and associated interaction domains-containing protein] 0.089 0.121
53 267331_at AT2G19280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.088 0.115
54 263266_at AT2G16520 unknown 0.088 0.041
55 247017_at AT5G66980 [AP2/B3-like transcriptional factor family protein] 0.087 0.091
56 250251_at AT5G13670 UMAMIT15, Usually multiple acids move in and out Transporters 15 0.085 0.045
57 252659_at AT3G44430 unknown 0.085 0.170
58 247367_at AT5G63290 [Radical SAM superfamily protein] 0.085 0.073
59 250745_at AT5G05850 PIRL1, plant intracellular ras group-related LRR 1 0.083 0.044
60 252541_at AT3G45750 [Nucleotidyltransferase family protein] 0.083 0.050
61 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 0.082 0.069
62 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.082 0.778
63 265371_at AT2G06490 [CACTA-like transposase family (Ptta/En/Spm), has a 7.5e-83 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.082 0.026
64 260422_at AT1G69630 [F-box/RNI-like superfamily protein] 0.081 0.044
65 266333_at AT2G32410 AXL, AXR1-like, AXL1, AXR1- like 1 0.081 0.018
66 247596_at AT5G60840 unknown 0.081 0.131
67 265127_at AT1G55560 sks14, SKU5 similar 14 -0.574 0.003
68 251635_at AT3G57510 ADPG1 -0.538 0.055
69 264545_at AT1G55670 PSAG, photosystem I subunit G -0.444 0.196
70 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.411 -0.452
71 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.409 -0.164
72 257832_at AT3G26740 CCL, CCR-like -0.393 0.144
73 248470_at AT5G50830 unknown -0.382 0.021
74 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.377 -0.150
75 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 -0.370 0.196
76 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 -0.359 -0.293
77 266115_at AT2G02140 LCR72, low-molecular-weight cysteine-rich 72, PDF2.6 -0.359 0.017
78 260969_at AT1G12240 ATBETAFRUCT4, AtFRUCT4, AtVI2, FRUCT4, fructosidase 4, VAC-INV, VACUOLAR INVERTASE, VI2, vacuolar invertase 2 -0.342 -0.218
79 258889_at AT3G05610 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.341 0.138
80 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.336 0.154
81 247512_at AT5G61720 unknown -0.331 0.057
82 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.329 -0.231
83 259570_at AT1G20440 AtCOR47, COR47, cold-regulated 47, RD17 -0.328 -0.223
84 262958_at AT1G54410 AtHIRD11, HIRD11, dehydrin 11kDa -0.318 -0.125
85 246841_at AT5G26700 [RmlC-like cupins superfamily protein] -0.318 0.062
86 253226_at AT4G35010 BGAL11, beta-galactosidase 11 -0.314 0.038
87 248822_at AT5G47000 [Peroxidase superfamily protein] -0.310 0.129
88 256581_at AT3G28830 unknown -0.307 0.083
89 252348_at AT3G48140 [B12D protein] -0.301 0.024
90 253277_at AT4G34230 ATCAD5, cinnamyl alcohol dehydrogenase 5, CAD-5, cinnamyl alcohol dehydrogenase 5, CAD5, cinnamyl alcohol dehydrogenase 5 -0.295 -0.107
91 251733_at AT3G56240 CCH, copper chaperone -0.292 -0.001
92 265080_at AT1G55570 sks12, SKU5 similar 12 -0.292 -0.015
93 251228_at AT3G62710 [Glycosyl hydrolase family protein] -0.290 0.024
94 245658_at AT1G28270 AtRALF4, RALFL4, ralf-like 4 -0.281 0.238
95 263688_at AT1G26920 unknown -0.278 0.178
96 250154_at AT5G15140 [Galactose mutarotase-like superfamily protein] -0.277 0.052
97 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 -0.277 -0.269
98 249852_at AT5G23270 ATSTP11, SUGAR TRANSPORTER 11, STP11, sugar transporter 11 -0.275 0.151
99 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 -0.274 0.007
100 260004_at AT1G67860 unknown -0.273 0.204
101 245803_at AT1G47128 RD21, responsive to dehydration 21, RD21A, responsive to dehydration 21A -0.272 -0.041
102 266918_at AT2G45800 PLIM2a, PLIM2a -0.269 0.021
103 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 -0.269 0.066
104 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 -0.268 0.052
105 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 -0.266 -0.168
106 261412_at AT1G07890 APX1, ascorbate peroxidase 1, ATAPX01, ATAPX1, CS1, MEE6, maternal effect embryo arrest 6 -0.266 -0.037
107 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 -0.260 0.109
108 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -0.258 -0.393
109 261528_at AT1G14420 AT59 -0.255 0.028
110 256588_at AT3G28790 unknown -0.254 0.082
111 261623_at AT1G01980 [ATSEC1A] -0.253 -0.067
112 258639_at AT3G07820 [Pectin lyase-like superfamily protein] -0.250 0.057
113 266764_at AT2G47050 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.247 0.069
114 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] -0.240 0.228
115 256966_at AT3G13400 sks13, SKU5 similar 13 -0.238 0.259
116 261749_at AT1G76180 ERD14, EARLY RESPONSE TO DEHYDRATION 14 -0.236 -0.240
117 262609_at AT1G13930 unknown -0.234 0.026
118 250631_at AT5G07430 [Pectin lyase-like superfamily protein] -0.233 -0.027
119 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 -0.233 0.060
120 251281_at AT3G61640 AGP20, arabinogalactan protein 20, AtAGP20, Arabinogalactan protein 20 -0.232 0.117
121 259269_at AT3G01270 [Pectate lyase family protein] -0.229 -0.073
122 259840_at AT1G52230 PSAH-2, PHOTOSYSTEM I SUBUNIT H-2, PSAH2, photosystem I subunit H2, PSI-H -0.229 0.353
123 257771_at AT3G23000 ATSR2, ATSRPK1, CIPK7, CBL-interacting protein kinase 7, PKS7, SnRK3.10, SNF1-RELATED PROTEIN KINASE 3.10 -0.227 0.004
124 245700_at AT5G04180 ACA3, alpha carbonic anhydrase 3, ATACA3, ALPHA CARBONIC ANHYDRASE 3 -0.221 0.021
125 245946_at AT5G19580 [glyoxal oxidase-related protein] -0.218 0.122
126 257986_at AT3G20865 AGP40, arabinogalactan protein 40 -0.218 0.390
127 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.218 0.213
128 259886_at AT1G76370 [Protein kinase superfamily protein] -0.217 0.091
129 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.215 -0.180
130 263126_at AT1G78460 [SOUL heme-binding family protein] -0.215 0.107
131 262786_at AT1G10740 [alpha/beta-Hydrolases superfamily protein] -0.215 -0.065