4.0:Information of module
WT 30μM phosphate 8 hours.
In comparison with 21h-DC3000 hrpA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009165 nucleotide biosynthetic process BP 8.058e-49
GO:1901293 nucleoside phosphate biosynthetic proces... BP 1.269e-48
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 3.179e-45
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016036 cellular response to phosphate starvatio... BP 2.230e-30
GO:1903509 liposaccharide metabolic process BP 2.914e-29
GO:0019375 galactolipid biosynthetic process BP 3.346e-29
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT 30μM phosphate 8 hours.		 Log2 signal ratio
21h-DC3000 hrpA
1 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 0.452 0.001
2 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.348 0.040
3 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.341 0.086
4 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] 0.338 0.042
5 261762_at AT1G15510 ATECB2, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, ECB2, EARLY CHLOROPLAST BIOGENESIS2, VAC1, VANILLA CREAM 1 0.334 0.154
6 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] 0.316 0.103
7 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.309 0.156
8 256675_at AT3G52170 [DNA binding] 0.303 0.180
9 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.289 0.186
10 250679_at AT5G06550 JMJ22, Jumonji domain-containing protein 22 0.287 0.118
11 265991_at AT2G24120 PDE319, PIGMENT DEFECTIVE 319, SCA3, SCABRA 3 0.279 0.090
12 254931_at AT4G11460 CRK30, cysteine-rich RLK (RECEPTOR-like protein kinase) 30 0.274 -0.140
13 262706_at AT1G16280 AtRH36, Arabidopsis thaliana RNA helicase 36, RH36, RNA helicase 36, SWA3, SLOW WALKER 3 0.270 0.125
14 265147_at AT1G51380 [DEA(D/H)-box RNA helicase family protein] 0.261 0.032
15 258505_at AT3G06530 [ARM repeat superfamily protein] 0.261 0.152
16 250936_at AT5G03120 unknown 0.258 -0.063
17 266276_at AT2G29330 TRI, tropinone reductase 0.252 -0.016
18 262766_at AT1G13160 [ARM repeat superfamily protein] 0.252 0.088
19 250418_at AT5G11240 [transducin family protein / WD-40 repeat family protein] 0.247 0.086
20 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.244 -0.041
21 258316_at AT3G22660 [rRNA processing protein-related] 0.240 0.085
22 258202_at AT3G13940 [DNA binding] 0.239 0.065
23 252508_at AT3G46210 [Ribosomal protein S5 domain 2-like superfamily protein] 0.238 0.079
24 266066_at AT2G18800 ATXTH21, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21, XTH21, xyloglucan endotransglucosylase/hydrolase 21 0.237 -0.064
25 266801_at AT2G22870 EMB2001, embryo defective 2001 0.236 0.057
26 247942_at AT5G57120 unknown 0.235 0.077
27 267309_at AT2G19385 [zinc ion binding] 0.234 0.107
28 250087_at AT5G17270 [Protein prenylyltransferase superfamily protein] 0.231 0.089
29 253777_at AT4G28450 [nucleotide binding] 0.226 0.077
30 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] 0.225 0.109
31 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.225 0.117
32 259672_at AT1G68990 MGP3, male gametophyte defective 3 0.220 0.103
33 247946_at AT5G57180 CIA2, chloroplast import apparatus 2 0.220 0.041
34 265326_at AT2G18220 [Noc2p family] 0.218 0.153
35 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.216 -0.007
36 246457_at AT5G16750 TOZ, TORMOZEMBRYO DEFECTIVE 0.215 0.106
37 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 0.215 0.123
38 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.214 0.053
39 245909_at AT5G09380 [RNA polymerase III RPC4] 0.214 0.012
40 247926_at AT5G57280 RID2, root initiation defective 2 0.213 0.064
41 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 0.212 0.180
42 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 0.212 -0.039
43 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] 0.211 0.174
44 263255_at AT1G10490 unknown 0.210 0.016
45 261301_at AT1G48570 [zinc finger (Ran-binding) family protein] 0.209 0.096
46 267371_at AT2G44510 [CDK inhibitor P21 binding protein] 0.208 0.079
47 257571_at AT3G16870 GATA17, GATA transcription factor 17 0.208 0.064
48 247754_at AT5G59080 unknown 0.207 -0.082
49 260316_at AT1G63810 unknown 0.205 0.090
50 259466_at AT1G19050 ARR7, response regulator 7 0.199 -0.005
51 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 0.198 -0.055
52 248357_at AT5G52380 [VASCULAR-RELATED NAC-DOMAIN 6] 0.197 0.056
53 266076_at AT2G40700 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.197 0.073
54 253005_at AT4G38100 CURT1D, CURVATURE THYLAKOID 1D 0.197 0.070
55 245518_at AT4G15850 ATRH1, RNA helicase 1, RH1, RNA helicase 1 0.195 0.140
56 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 0.194 0.086
57 247497_at AT5G61770 PPAN, PETER PAN-like protein 0.193 0.079
58 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.192 0.056
59 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.191 0.058
60 258630_at AT3G02820 [zinc knuckle (CCHC-type) family protein] 0.188 0.015
61 262207_at AT1G74850 PDE343, PIGMENT DEFECTIVE 343, PTAC2, plastid transcriptionally active 2 0.187 0.041
62 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.183 0.138
63 247235_at AT5G64580 EMB3144, EMBRYO DEFECTIVE 3144 0.182 0.094
64 256284_at AT3G12530 PSF2 0.181 0.151
65 262738_at AT1G28530 unknown 0.181 0.046
66 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.181 0.024
67 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.179 0.010
68 263864_at AT2G04530 CPZ, TRZ2, TRNASE Z 2 0.179 0.115
69 267445_at AT2G33680 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.179 -0.007
70 250987_at AT5G02860 [Pentatricopeptide repeat (PPR) superfamily protein] 0.178 0.094
71 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 0.178 0.003
72 259367_at AT1G69070 unknown 0.178 0.036
73 256107_at AT1G16830 [Pentatricopeptide repeat (PPR) superfamily protein] 0.178 0.104
74 254079_at AT4G25730 [FtsJ-like methyltransferase family protein] 0.178 0.080
75 260343_at AT1G69200 FLN2, fructokinase-like 2 0.175 0.174
76 254092_at AT4G25090 [Riboflavin synthase-like superfamily protein] 0.174 -0.002
77 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 0.173 0.126
78 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.172 0.138
79 264002_at AT2G22360 DJA6, DNA J protein A6 0.172 0.003
80 267044_at AT2G34357 [ARM repeat superfamily protein] 0.171 0.076
81 262272_at AT1G42440 unknown 0.171 0.051
82 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 0.170 0.133
83 266253_at AT2G27840 HD2D, histone deacetylase 2D, HDA13, HISTONE DEACETYLASE 13, HDT04, HDT4 0.170 0.133
84 260425_at AT1G72440 EDA25, embryo sac development arrest 25, SWA2, SLOW WALKER2 0.170 0.141
85 246350_at AT1G16650 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.169 0.063
86 255749_at AT1G31970 STRS1, STRESS RESPONSE SUPPRESSOR 1 0.169 0.042
87 247046_at AT5G66540 unknown 0.168 0.006
88 256661_at AT3G11964 RRP5, Ribosomal RNA Processing 5 0.166 0.087
89 248443_at AT5G51310 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.166 -0.075
90 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B 0.165 0.026
91 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.164 0.008
92 249433_at AT5G39940 [FAD/NAD(P)-binding oxidoreductase family protein] 0.164 0.069
93 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.163 0.052
94 259908_at AT1G60850 AAC42, ATRPAC42 0.163 0.079
95 258872_at AT3G03260 HDG8, homeodomain GLABROUS 8 -0.682 -0.069
96 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 -0.646 0.137
97 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like -0.549 -0.033
98 254111_at AT4G24890 ATPAP24, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, PAP24, purple acid phosphatase 24 -0.535 -0.035
99 259974_at AT1G76430 PHT1;9, phosphate transporter 1;9 -0.525 -0.077
100 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.521 -0.042
101 250091_at AT5G17340 [Putative membrane lipoprotein] -0.502 -0.029
102 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] -0.499 -0.040
103 254097_at AT4G25160 [U-box domain-containing protein kinase family protein] -0.495 -0.034
104 253087_at AT4G36350 ATPAP25, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, PAP25, purple acid phosphatase 25 -0.486 0.047
105 258172_at AT3G21620 [ERD (early-responsive to dehydration stress) family protein] -0.483 -0.025
106 256340_at AT1G72070 [Chaperone DnaJ-domain superfamily protein] -0.479 -0.056
107 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 -0.478 -0.389
108 252730_at AT3G43110 unknown -0.465 -0.048
109 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL -0.447 -0.052
110 260148_at AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.435 -0.015
111 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.435 -0.009
112 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.433 0.005
113 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.428 -0.055
114 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.409 -0.041
115 254729_at AT4G13700 ATPAP23, PAP23, purple acid phosphatase 23 -0.400 -0.015
116 254096_at AT4G25150 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.397 0.043
117 263168_at AT1G03020 [Thioredoxin superfamily protein] -0.396 -0.080
118 258932_at AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -0.394 -0.076
119 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.387 0.038
120 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.385 -0.104
121 251315_at AT3G61410 unknown -0.383 -0.013
122 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.381 0.028
123 265387_at AT2G20670 unknown -0.381 -0.002
124 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 -0.380 -0.033
125 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 -0.380 0.033
126 261803_at AT1G30500 NF-YA7, nuclear factor Y, subunit A7 -0.376 0.049
127 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 -0.371 -0.038
128 260522_x_at AT2G41730 unknown -0.361 -0.010
129 254290_at AT4G23000 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.353 -0.092
130 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 -0.348 -0.222
131 253474_at AT4G32270 [Ubiquitin-like superfamily protein] -0.346 -0.018
132 249747_at AT5G24600 unknown -0.341 -0.028
133 246551_at AT5G15070 [Phosphoglycerate mutase-like family protein] -0.337 0.024
134 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.336 -0.044
135 247287_at AT5G64230 unknown -0.334 -0.011
136 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 -0.330 -0.076
137 264525_at AT1G10060 ATBCAT-1, branched-chain amino acid transaminase 1, BCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1 -0.330 -0.015
138 259750_at AT1G71130 AtERF070, CRF8, cytokinin response factor 8, ERF070, ethylene response factor 70 -0.328 -0.031
139 261817_at AT1G08180 unknown -0.324 0.015
140 258887_at AT3G05630 PDLZ2, PHOSPHOLIPASE D ZETA 2, PLDP2, phospholipase D P2, PLDZETA2, PHOSPHOLIPASE D ZETA 2 -0.321 0.094
141 255958_at AT1G22150 SULTR1;3, sulfate transporter 1;3 -0.319 -0.027
142 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.317 -0.127
143 260201_at AT1G67600 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] -0.317 0.005
144 258901_at AT3G05640 [Protein phosphatase 2C family protein] -0.312 -0.084
145 253296_at AT4G33770 ITPK2, inositol 1,3,4-trisphosphate 5/6 kinase 2 -0.310 -0.008
146 255900_at AT1G17830 unknown -0.306 -0.077
147 246045_at AT5G19430 [RING/U-box superfamily protein] -0.306 -0.019
148 256014_at AT1G19200 unknown -0.305 -0.017
149 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -0.303 -0.019
150 250515_at AT5G09570 [Cox19-like CHCH family protein] -0.301 -0.021
151 249721_at AT5G24655 LSU4, RESPONSE TO LOW SULFUR 4 -0.295 -0.003
152 248467_at AT5G50800 AtSWEET13, SWEET13 -0.294 0.018
153 251741_at AT3G56040 UGP3, UDP-glucose pyrophosphorylase 3 -0.292 -0.018
154 245882_at AT5G09470 DIC3, dicarboxylate carrier 3 -0.286 -0.032
155 255763_at AT1G16730 unknown -0.286 -0.042
156 266564_at AT2G24000 scpl22, serine carboxypeptidase-like 22 -0.281 -0.098
157 262411_at AT1G34640 [peptidases] -0.270 0.014
158 250379_at AT5G11590 TINY2, TINY2 -0.269 0.065
159 259334_at AT3G03790 [ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein] -0.269 -0.021
160 245495_at AT4G16400 unknown -0.268 0.030
161 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 -0.268 0.063
162 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.267 -0.005
163 245193_at AT1G67810 SUFE2, sulfur E2 -0.266 0.020
164 254796_at AT4G13000 [AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein] -0.262 -0.007
165 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 -0.261 -0.024
166 248218_at AT5G53710 unknown -0.261 -0.041
167 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.260 -0.005
168 245082_at AT2G23270 unknown -0.257 0.006
169 257288_at AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 -0.254 0.016
170 266100_at AT2G37980 [O-fucosyltransferase family protein] -0.254 -0.040
171 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] -0.251 -0.002
172 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -0.251 -0.045
173 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.251 -0.027
174 251143_at AT5G01220 SQD2, sulfoquinovosyldiacylglycerol 2 -0.250 0.050
175 247314_at AT5G64000 ATSAL2, SAL2 -0.248 0.005
176 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] -0.246 0.032
177 247393_at AT5G63130 [Octicosapeptide/Phox/Bem1p family protein] -0.246 -0.030
178 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 -0.245 -0.030
179 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.242 0.069
180 263401_at AT2G04070 [MATE efflux family protein] -0.241 -0.051
181 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -0.239 0.025
182 249640_at AT5G36940 CAT3, cationic amino acid transporter 3 -0.237 0.021
183 247918_at AT5G57610 [Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain] -0.236 -0.013
184 259057_at AT3G03310 ATLCAT3, ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, LCAT3, lecithin:cholesterol acyltransferase 3 -0.236 0.009
185 258925_at AT3G10420 SPD1, SEEDLING PLASTID DEVELOPMENT 1 -0.236 -0.015
186 264341_at AT1G70270 unknown -0.234 -0.125
187 265898_at AT2G25690 unknown -0.234 -0.061