4.0:Information of module
chl1-12 10mM NH4NO3
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006811 ion transport BP 9.815e-18
GO:1902578 single-organism localization BP 1.581e-15
GO:0044765 single-organism transport BP 3.445e-15
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050832 defense response to fungus BP 6.727e-11
GO:0001101 response to acid chemical BP 1.047e-10
GO:0071456 cellular response to hypoxia BP 3.351e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
chl1-12 10mM NH4NO3		 Log2 signal ratio
bri1-116
1 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.920 -0.034
2 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.774 -0.047
3 253408_at AT4G32950 [Protein phosphatase 2C family protein] 0.651 -0.013
4 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.599 0.101
5 262719_at AT1G43590 unknown 0.499 -0.168
6 249687_at AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 0.490 0.025
7 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.484 0.060
8 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.468 0.077
9 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.451 -0.030
10 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.434 0.091
11 253036_at AT4G38340 NLP3, NIN-like protein 3 0.428 0.036
12 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.424 -0.068
13 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.406 -0.071
14 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.398 -0.271
15 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 0.387 -0.005
16 260540_at AT2G43500 NLP8, NIN-like protein 8 0.376 0.018
17 250054_at AT5G17860 CAX7, calcium exchanger 7 0.374 -0.022
18 252510_at AT3G46270 [receptor protein kinase-related] 0.363 0.119
19 245240_at AT1G44510 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.346 0.043
20 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] 0.327 0.044
21 254037_at AT4G25760 ATGDU2, glutamine dumper 2, GDU2, glutamine dumper 2 0.308 0.027
22 258560_at AT3G06020 FAF4, FANTASTIC FOUR 4 0.307 0.030
23 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.292 -0.104
24 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 0.288 -0.022
25 251706_at AT3G56620 UMAMIT10, Usually multiple acids move in and out Transporters 10 0.284 -0.136
26 255957_at AT1G22160 unknown 0.283 -0.335
27 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.282 0.089
28 250582_at AT5G07580 [Integrase-type DNA-binding superfamily protein] 0.275 -0.115
29 260831_at AT1G06830 [Glutaredoxin family protein] 0.272 0.311
30 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 0.267 -0.019
31 250605_at AT5G07570 [glycine/proline-rich protein] 0.267 -0.077
32 250639_at AT5G07560 ATGRP20, GRP20, glycine-rich protein 20 0.266 -0.105
33 265151_at AT1G51340 [MATE efflux family protein] 0.262 0.070
34 263232_at AT1G05700 [Leucine-rich repeat transmembrane protein kinase protein] 0.262 -0.058
35 256927_at AT3G22550 unknown 0.261 0.079
36 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] 0.248 -0.315
37 256164_at AT1G48800 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.247 0.067
38 254263_at AT4G23493 unknown 0.244 0.090
39 251466_at AT3G59340 unknown 0.240 -0.226
40 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.236 -0.000
41 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.234 -0.020
42 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] 0.231 -0.050
43 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 0.231 0.088
44 262898_at AT1G59850 [ARM repeat superfamily protein] 0.223 -0.054
45 256081_at AT1G20700 ATWOX14, WUSCHEL RELATED HOMEOBOX 14, WOX14, WUSCHEL related homeobox 14 0.223 -0.019
46 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 0.223 0.053
47 255294_at AT4G04750 [Major facilitator superfamily protein] 0.217 0.062
48 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 0.215 -0.012
49 254347_at AT4G22070 ATWRKY31, WRKY31, WRKY DNA-binding protein 31 0.214 -0.006
50 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.212 0.090
51 262138_at AT1G52660 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.209 0.081
52 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 0.209 -0.030
53 257668_at AT3G20460 [Major facilitator superfamily protein] 0.208 -0.236
54 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.207 -0.023
55 254090_at AT4G25010 AtSWEET14, SWEET14 0.205 0.047
56 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.204 -0.194
57 259195_at AT3G01730 unknown 0.202 0.057
58 257947_at AT3G21720 ICL, isocitrate lyase 0.201 -0.094
59 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.200 0.560
60 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.199 -0.111
61 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.198 -0.101
62 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 0.195 -0.007
63 249920_at AT5G19260 FAF3, FANTASTIC FOUR 3 0.194 0.016
64 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.192 -0.186
65 261199_at AT1G12950 RSH2, root hair specific 2 0.191 0.314
66 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] 0.189 -0.047
67 246617_at AT5G36270 [similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G75270.1)] 0.187 0.017
68 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.185 -0.451
69 249897_at AT5G22550 unknown 0.185 -0.294
70 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.184 -0.045
71 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.183 -0.704
72 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] 0.180 0.018
73 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.179 -0.087
74 249791_at AT5G23810 AAP7, amino acid permease 7 0.178 0.087
75 264054_at AT2G22540 AGL22, AGAMOUS-like 22, FAQ1, Flowering Arabidopsis QTL1, SVP, SHORT VEGETATIVE PHASE 0.178 0.291
76 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 0.177 -0.019
77 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.177 0.023
78 247212_at AT5G65040 unknown 0.176 -0.118
79 259540_at AT1G20640 NLP4, NIN-like protein 4 0.176 -0.034
80 258935_at AT3G10120 unknown 0.175 -0.007
81 265582_at AT2G20030 [RING/U-box superfamily protein] 0.175 0.067
82 252238_at AT3G49960 [Peroxidase superfamily protein] 0.174 0.025
83 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.171 0.015
84 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.171 -0.138
85 248961_at AT5G45650 [subtilase family protein] 0.171 0.180
86 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 0.171 -0.036
87 250493_at AT5G09800 [ARM repeat superfamily protein] 0.170 0.198
88 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 -1.058 -0.411
89 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.850 0.007
90 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.767 -0.375
91 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 -0.761 -0.082
92 266292_at AT2G29350 SAG13, senescence-associated gene 13 -0.666 0.063
93 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.662 -0.025
94 264348_at AT1G12110 AtNPF6.3, ATNRT1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, B-1, CHL1, CHLORINA 1, CHL1-1, NPF6.3, NRT1/ PTR family 6.3, NRT1, NITRATE TRANSPORTER 1, NRT1.1, nitrate transporter 1.1 -0.655 -0.141
95 261021_at AT1G26380 [FAD-binding Berberine family protein] -0.601 -0.257
96 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.594 0.091
97 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 -0.570 0.001
98 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.556 0.006
99 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.554 -0.027
100 249476_at AT5G38910 [RmlC-like cupins superfamily protein] -0.516 -0.017
101 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.515 -0.268
102 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.507 0.229
103 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.475 -0.142
104 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.459 -0.205
105 264774_at AT1G22890 unknown -0.450 0.187
106 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.447 0.099
107 252882_at AT4G39675 unknown -0.423 -0.055
108 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.378 -0.094
109 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.373 -0.235
110 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.369 -0.186
111 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 -0.361 -0.136
112 251334_at AT3G61390 [RING/U-box superfamily protein] -0.342 0.009
113 265945_at AT2G19500 ATCKX2, CKX2, cytokinin oxidase 2 -0.331 0.076
114 255252_at AT4G04990 unknown -0.327 -0.071
115 249417_at AT5G39670 [Calcium-binding EF-hand family protein] -0.325 -0.150
116 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.312 -0.177
117 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.308 0.234
118 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 -0.301 0.013
119 249333_at AT5G40990 GLIP1, GDSL lipase 1 -0.294 -0.107
120 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] -0.294 -0.135
121 252345_at AT3G48640 unknown -0.291 0.058
122 257061_at AT3G18250 [Putative membrane lipoprotein] -0.289 -0.045
123 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.288 0.035
124 250415_at AT5G11210 ATGLR2.5, ARABIDOPSIS THALIANA GLU, GLR2.5, glutamate receptor 2.5 -0.278 -0.027
125 253851_at AT4G28110 AtMYB41, myb domain protein 41, MYB41, myb domain protein 41 -0.275 -0.011
126 265983_at AT2G18550 ATHB21, homeobox protein 21, HB-2, homeobox-2, HB21, homeobox protein 21 -0.267 0.105
127 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.266 -0.063
128 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.262 0.014
129 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.260 0.396
130 262231_at AT1G68740 PHO1;H1 -0.258 -0.185
131 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 -0.252 -0.469
132 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 -0.248 0.026
133 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 -0.236 -0.036
134 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.234 -0.039
135 262399_at AT1G49500 unknown -0.234 0.014
136 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.232 -0.059
137 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 -0.224 0.089
138 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 -0.218 -0.057
139 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 -0.216 0.020
140 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.214 0.006
141 250597_at AT5G07680 ANAC079, Arabidopsis NAC domain containing protein 79, ANAC080, NAC domain containing protein 80, ATNAC4, NAC080, NAC domain containing protein 80, NAC4 -0.214 -0.088
142 249001_at AT5G44990 [Glutathione S-transferase family protein] -0.210 0.081
143 260706_at AT1G32350 AOX1D, alternative oxidase 1D -0.208 -0.367
144 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -0.206 0.218
145 253796_at AT4G28460 unknown -0.205 -0.181
146 262705_at AT1G16260 [Wall-associated kinase family protein] -0.205 0.086
147 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.202 0.115
148 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.201 0.066
149 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] -0.200 -0.152
150 245875_at AT1G26240 [Proline-rich extensin-like family protein] -0.200 0.091
151 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 -0.199 0.247
152 253317_at AT4G33960 unknown -0.195 0.126
153 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.191 -0.105
154 257479_at AT1G16150 WAKL4, wall associated kinase-like 4 -0.188 0.079
155 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.184 -0.020
156 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 -0.181 0.275
157 252073_at AT3G51750 unknown -0.180 -0.003
158 260881_at AT1G21550 [Calcium-binding EF-hand family protein] -0.179 -0.046
159 249771_at AT5G24080 [Protein kinase superfamily protein] -0.178 0.114
160 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 -0.175 0.247
161 260556_at AT2G43620 [Chitinase family protein] -0.174 0.026
162 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 -0.173 0.011
163 260568_at AT2G43570 CHI, chitinase, putative -0.173 -0.064
164 247649_at AT5G60030 unknown -0.173 0.125
165 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.172 -0.172
166 256548_at AT3G14770 AtSWEET2, SWEET2 -0.169 -0.237
167 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.165 -0.031
168 266108_at AT2G37900 [Major facilitator superfamily protein] -0.165 -0.014
169 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] -0.163 -0.043
170 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 -0.163 -0.222
171 264433_at AT1G61810 BGLU45, beta-glucosidase 45 -0.161 0.041
172 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.161 -0.104
173 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.161 0.093