4.0:Information of module
T101D 10mM NH4NO3
In comparison with Pedicels stage15 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 4.674e-10
GO:0010053 root epidermal cell differentiation BP 1.163e-09
GO:0090627 plant epidermal cell differentiation BP 2.459e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 8.949e-33
GO:0019684 photosynthesis, light reaction BP 1.773e-32
GO:0006091 generation of precursor metabolites and ... BP 1.823e-28
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
T101D 10mM NH4NO3		 Log2 signal ratio
Pedicels stage15
1 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.386 -1.199
2 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 0.331 -1.161
3 250576_at AT5G08250 [Cytochrome P450 superfamily protein] 0.331 -0.899
4 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.317 -0.357
5 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.280 -0.828
6 265151_at AT1G51340 [MATE efflux family protein] 0.269 -0.982
7 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.268 -0.059
8 254090_at AT4G25010 AtSWEET14, SWEET14 0.258 0.069
9 250639_at AT5G07560 ATGRP20, GRP20, glycine-rich protein 20 0.253 -0.821
10 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.249 0.009
11 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 0.247 0.321
12 250605_at AT5G07570 [glycine/proline-rich protein] 0.243 -0.712
13 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.236 0.459
14 246374_at AT1G51840 [protein kinase-related] 0.234 -0.112
15 252510_at AT3G46270 [receptor protein kinase-related] 0.229 -0.889
16 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.224 -0.641
17 262719_at AT1G43590 unknown 0.218 -0.289
18 250054_at AT5G17860 CAX7, calcium exchanger 7 0.213 0.250
19 246617_at AT5G36270 [similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G75270.1)] 0.203 -0.059
20 250582_at AT5G07580 [Integrase-type DNA-binding superfamily protein] 0.200 1.023
21 261541_at AT1G63600 [Receptor-like protein kinase-related family protein] 0.198 -0.657
22 262898_at AT1G59850 [ARM repeat superfamily protein] 0.191 -0.202
23 255957_at AT1G22160 unknown 0.177 1.019
24 258935_at AT3G10120 unknown 0.167 -1.387
25 260344_at AT1G69240 ATMES15, ARABIDOPSIS THALIANA METHYL ESTERASE 15, MES15, methyl esterase 15, RHS9, ROOT HAIR SPECIFIC 9 0.166 0.191
26 261199_at AT1G12950 RSH2, root hair specific 2 0.161 -0.419
27 245966_at AT5G19790 RAP2.11, related to AP2 11 0.159 -0.734
28 258765_at AT3G10710 RHS12, root hair specific 12 0.158 -0.774
29 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.154 -0.803
30 251706_at AT3G56620 UMAMIT10, Usually multiple acids move in and out Transporters 10 0.152 -0.096
31 256927_at AT3G22550 unknown 0.149 1.318
32 265246_at AT2G43050 ATPMEPCRD 0.147 0.025
33 251689_at AT3G56500 [serine-rich protein-related] 0.141 -1.058
34 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] 0.140 -1.045
35 252444_at AT3G46980 PHT4;3, phosphate transporter 4;3 0.136 -0.309
36 258620_at AT3G02940 AtMYB107, myb domain protein 107, MYB107, myb domain protein 107 0.135 -0.358
37 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.132 -0.190
38 255516_at AT4G02270 RHS13, root hair specific 13 0.131 -0.156
39 256563_at AT3G29780 RALFL27, ralf-like 27 0.128 -0.430
40 264054_at AT2G22540 AGL22, AGAMOUS-like 22, FAQ1, Flowering Arabidopsis QTL1, SVP, SHORT VEGETATIVE PHASE 0.128 0.068
41 260161_at AT1G79860 ATROPGEF12, MEE64, MATERNAL EFFECT EMBRYO ARREST 64, ROPGEF12, ROP (rho of plants) guanine nucleotide exchange factor 12 0.127 -0.181
42 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.124 -0.712
43 259720_at AT1G61080 [Hydroxyproline-rich glycoprotein family protein] 0.124 -0.556
44 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.123 -0.169
45 263817_at AT2G10070 unknown 0.121 -0.805
46 249263_at AT5G41730 [Protein kinase family protein] 0.120 -1.077
47 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] 0.120 -0.447
48 266004_at AT2G37330 ALS3, ALUMINUM SENSITIVE 3 0.120 -0.544
49 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.115 -0.013
50 267207_at AT2G30840 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.114 -0.401
51 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] 0.113 0.365
52 250631_at AT5G07430 [Pectin lyase-like superfamily protein] 0.112 -0.473
53 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.112 0.123
54 264348_at AT1G12110 AtNPF6.3, ATNRT1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, B-1, CHL1, CHLORINA 1, CHL1-1, NPF6.3, NRT1/ PTR family 6.3, NRT1, NITRATE TRANSPORTER 1, NRT1.1, nitrate transporter 1.1 0.111 -0.183
55 249791_at AT5G23810 AAP7, amino acid permease 7 0.109 0.824
56 265327_at AT2G18210 unknown 0.109 -0.181
57 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 0.108 -0.647
58 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.108 0.078
59 264371_at AT1G12090 ELP, extensin-like protein -1.300 1.332
60 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.949 0.759
61 262753_at AT1G16340 ATKDSA2, ATKSDA -0.613 0.089
62 251319_at AT3G61610 [Galactose mutarotase-like superfamily protein] -0.511 -0.554
63 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.456 -0.578
64 255720_at AT1G32060 PRK, phosphoribulokinase -0.382 1.142
65 263114_at AT1G03130 PSAD-2, photosystem I subunit D-2 -0.339 1.087
66 254790_at AT4G12800 PSAL, photosystem I subunit l -0.337 0.780
67 251519_at AT3G59400 GUN4, GENOMES UNCOUPLED 4 -0.326 0.265
68 251762_at AT3G55800 SBPASE, sedoheptulose-bisphosphatase -0.309 2.068
69 251229_at AT3G62740 BGLU7, beta glucosidase 7 -0.303 -0.928
70 264837_at AT1G03600 PSB27 -0.300 1.575
71 262970_at AT1G75690 LQY1, LOW QUANTUM YIELD OF PHOTOSYSTEM II 1 -0.294 1.043
72 265998_at AT2G24270 ALDH11A3, aldehyde dehydrogenase 11A3 -0.292 0.438
73 261788_at AT1G15980 NDF1, NDH-dependent cyclic electron flow 1, NDH48, NAD(P)H DEHYDROGENASE SUBUNIT 48, PnsB1, Photosynthetic NDH subcomplex B 1 -0.291 0.573
74 257807_at AT3G26650 GAPA, glyceraldehyde 3-phosphate dehydrogenase A subunit, GAPA-1, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1 -0.287 1.927
75 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 -0.274 -0.635
76 258285_at AT3G16140 PSAH-1, photosystem I subunit H-1 -0.270 1.678
77 259625_at AT1G42970 GAPB, glyceraldehyde-3-phosphate dehydrogenase B subunit -0.268 0.734
78 255435_at AT4G03280 PETC, photosynthetic electron transfer C, PGR1, PROTON GRADIENT REGULATION 1 -0.258 1.755
79 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 -0.253 1.743
80 245701_at AT5G04140 FD-GOGAT, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, GLS1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, GLU1, glutamate synthase 1, GLUS -0.242 0.650
81 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.241 0.804
82 264185_at AT1G54780 AtTLP18.3, TLP18.3, thylakoid lumen protein 18.3 -0.232 0.984
83 254970_at AT4G10340 LHCB5, light harvesting complex of photosystem II 5 -0.225 1.327
84 252366_at AT3G48420 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.221 0.565
85 261746_at AT1G08380 PSAO, photosystem I subunit O -0.220 0.833
86 251814_at AT3G54890 LHCA1, photosystem I light harvesting complex gene 1 -0.200 1.170
87 263676_at AT1G09340 CRB, chloroplast RNA binding, CSP41B, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, HIP1.3, heteroglycan-interacting protein 1.3 -0.199 1.845
88 245061_at AT2G39730 RCA, rubisco activase -0.195 0.439
89 247649_at AT5G60030 unknown -0.195 -0.499
90 261488_at AT1G14345 [NAD(P)-linked oxidoreductase superfamily protein] -0.187 1.127
91 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 -0.187 0.610
92 266636_at AT2G35370 GDCH, glycine decarboxylase complex H -0.185 0.725
93 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.184 -0.026
94 254102_at AT4G25050 ACP4, acyl carrier protein 4 -0.171 1.091
95 260704_at AT1G32470 [Single hybrid motif superfamily protein] -0.169 0.304
96 251218_at AT3G62410 CP12, CP12 DOMAIN-CONTAINING PROTEIN 1, CP12-2, CP12 domain-containing protein 2 -0.167 0.688
97 255886_at AT1G20340 DRT112, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, PETE2, PLASTOCYANIN 2 -0.164 1.272
98 261218_at AT1G20020 ATLFNR2, LEAF FNR 2, FNR2, ferredoxin-NADP(+)-oxidoreductase 2, LFNR2, leaf-type chloroplast-targeted FNR 2 -0.158 1.406
99 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.155 1.177
100 255078_at AT4G09010 APX4, ascorbate peroxidase 4, TL29, thylakoid lumen 29 -0.154 0.955
101 252353_at AT3G48200 unknown -0.153 1.114
102 251243_at AT3G61870 unknown -0.152 1.073
103 267635_at AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.150 0.386
104 263126_at AT1G78460 [SOUL heme-binding family protein] -0.140 -0.639
105 267612_at AT2G26690 AtNPF6.2, NPF6.2, NRT1/ PTR family 6.2 -0.139 1.420
106 248408_at AT5G51520 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.136 -0.948
107 259038_at AT3G09210 PTAC13, plastid transcriptionally active 13 -0.135 0.241
108 266642_at AT2G35410 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.134 1.258
109 265182_at AT1G23740 AOR, alkenal/one oxidoreductase -0.122 0.623
110 262612_at AT1G14150 PnsL2, Photosynthetic NDH subcomplex L 2, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 -0.120 0.803
111 248201_at AT5G54180 PTAC15, plastid transcriptionally active 15 -0.119 -0.050
112 251031_at AT5G02120 OHP, one helix protein, PDE335, PIGMENT DEFECTIVE 335 -0.116 0.952
113 257773_at AT3G29185 unknown -0.115 0.983
114 245023_at ATCG00080 PSBI, photosystem II reaction center protein I -0.114 0.504
115 254137_at AT4G24930 [thylakoid lumenal 17.9 kDa protein, chloroplast] -0.110 1.289