4.0:Information of module
Col-0 mbs1-1 HL 0h
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0022411 cellular component disassembly BP 1.039e-05
GO:0044550 secondary metabolite biosynthetic proces... BP 8.611e-05
GO:0016144 S-glycoside biosynthetic process BP 4.068e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.678e-05
GO:0033993 response to lipid BP 3.664e-04
GO:0010033 response to organic substance BP 4.275e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 mbs1-1 HL 0h		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 252036_at AT3G52070 unknown 0.816 -0.091
2 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.539 -0.024
3 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) 0.361 -0.022
4 265643_at AT2G27390 [proline-rich family protein] 0.227 -0.061
5 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] 0.226 -0.022
6 262363_at AT1G72850 [Disease resistance protein (TIR-NBS class)] 0.225 -0.012
7 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.212 0.493
8 258619_at AT3G02780 IDI2, ATISOPENTENYL DIPHOSPHE ISOMERASE 2, IPIAT1, IPP2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 0.200 -0.020
9 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.188 0.061
10 262305_at AT1G70950 [TPX2 (targeting protein for Xklp2) protein family] 0.184 -0.030
11 256450_at AT1G75290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.173 0.026
12 256158_at AT1G13590 ATPSK1, phytosulfokine 1 precursor, PSK1, phytosulfokine 1 precursor 0.162 -0.015
13 259947_at AT1G71530 [Protein kinase superfamily protein] 0.162 0.104
14 262731_at AT1G16420 ATMC8, ARABIDOPSIS THALIANA METACASPASE 8, AtMCP2e, metacaspase 2e, MC8, metacaspase 8, MCP2e, metacaspase 2e 0.160 0.116
15 259150_at AT3G10320 [Glycosyltransferase family 61 protein] 0.159 0.083
16 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.156 -0.101
17 256321_at AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 0.155 0.124
18 262867_at AT1G64960 HEB1, hypersensitive to excess boron 1 0.153 0.042
19 252129_at AT3G50890 AtHB28, homeobox protein 28, HB28, homeobox protein 28, ZHD7, ZINC FINGER HOMEODOMAIN 7 0.151 -0.068
20 260217_at AT1G74600 OTP87, organelle transcript processing 87 0.146 0.061
21 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] 0.137 0.167
22 247165_at AT5G65790 ATMYB68, MYB DOMAIN PROTEIN 68, MYB68, myb domain protein 68 0.131 -0.054
23 245380_at AT4G17760 [damaged DNA binding] 0.127 -0.068
24 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.125 -0.011
25 252400_at AT3G48020 unknown 0.121 0.128
26 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 0.117 0.130
27 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 0.116 -0.074
28 253363_at AT4G33130 unknown 0.113 -0.018
29 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.108 0.038
30 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 0.107 -0.000
31 254623_at AT4G18480 CH-42, CHLORINA 42, CH42, CHLORINA 42, CHL11, CHLI-1, CHLI1 0.106 -0.028
32 248136_at AT5G54910 [DEA(D/H)-box RNA helicase family protein] 0.100 0.069
33 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 0.097 0.062
34 252357_at AT3G48410 [alpha/beta-Hydrolases superfamily protein] 0.097 -0.060
35 260422_at AT1G69630 [F-box/RNI-like superfamily protein] 0.095 -0.014
36 254851_at AT4G12010 [Disease resistance protein (TIR-NBS-LRR class) family] 0.095 0.128
37 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A 0.093 -0.027
38 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA 0.093 -0.017
39 254684_at AT4G13850 ATGRP2, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, glycine-rich RNA-binding protein 2, GRP2, glycine rich protein 2 0.093 -0.022
40 259759_at AT1G77550 [tubulin-tyrosine ligases] 0.091 -0.003
41 258623_at AT3G02790 MBS1, METHYLENE BLUE SENSITIVITY 1 -0.842 -0.078
42 258535_at AT3G06750 [hydroxyproline-rich glycoprotein family protein] -0.367 -0.078
43 264777_at AT1G08630 THA1, threonine aldolase 1 -0.309 0.028
44 256846_at AT3G27980 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.261 -0.030
45 257288_at AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 -0.254 -0.005
46 257413_at AT1G22910 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.250 -0.052
47 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.236 -0.073
48 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.221 -0.042
49 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.219 -0.022
50 261641_at AT1G27670 unknown -0.210 -0.086
51 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.200 -0.177
52 245383_at AT4G17810 [C2H2 and C2HC zinc fingers superfamily protein] -0.191 -0.131
53 264738_at AT1G62250 unknown -0.184 -0.069
54 254033_at AT4G25950 VATG3, vacuolar ATP synthase G3 -0.175 -0.044
55 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.173 0.096
56 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.171 -0.051
57 246717_at AT5G28920 unknown -0.169 -0.038
58 248050_at AT5G56100 [glycine-rich protein / oleosin] -0.166 -0.104
59 251088_at AT5G01480 [Cysteine/Histidine-rich C1 domain family protein] -0.163 -0.022
60 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE -0.162 0.025
61 257543_at AT3G28960 [Transmembrane amino acid transporter family protein] -0.162 -0.064
62 255614_at AT4G01280 [Homeodomain-like superfamily protein] -0.161 0.030
63 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] -0.158 -0.116
64 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] -0.157 -0.078
65 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 -0.157 -0.022
66 258227_at AT3G15620 UVR3, UV REPAIR DEFECTIVE 3 -0.157 -0.042
67 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.156 -0.035
68 253742_at AT4G28900 [copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] -0.153 -0.073
69 247467_at AT5G62130 [Per1-like family protein] -0.152 -0.060
70 253889_at AT4G27760 FEY, FOREVER YOUNG, FEY3 -0.152 -0.029
71 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.150 -0.020
72 264329_at AT1G04140 [Transducin family protein / WD-40 repeat family protein] -0.143 -0.024
73 255505_at AT4G02080 ASAR1, ATSAR2, secretion-associated RAS super family 2, ATSARA1C, SAR2, secretion-associated RAS super family 2 -0.142 -0.015
74 266824_at AT2G22800 HAT9 -0.142 -0.080
75 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 -0.139 -0.097
76 261454_at AT1G21090 [Cupredoxin superfamily protein] -0.138 -0.105
77 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] -0.132 -0.064
78 245864_at AT1G58070 unknown -0.130 0.078
79 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.128 -0.077