4.0:Information of module
OE-HRA1 2HS 
In comparison with Light 3day hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 5.059e-11
GO:0010243 response to organonitrogen compound BP 2.617e-10
GO:1901700 response to oxygen-containing compound BP 3.784e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001666 response to hypoxia BP 4.903e-08
GO:0036293 response to decreased oxygen levels BP 7.410e-08
GO:0070482 response to oxygen levels BP 1.103e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
OE-HRA1 2HS 		 Log2 signal ratio
Light 3day hml
1 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 0.616 -0.173
2 255527_at AT4G02360 unknown 0.490 -0.186
3 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 0.442 -0.173
4 252136_at AT3G50770 CML41, calmodulin-like 41 0.433 -2.081
5 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.430 -0.648
6 254922_at AT4G11370 RHA1A, RING-H2 finger A1A 0.383 0.057
7 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] 0.364 -0.173
8 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 0.310 -0.173
9 261957_at AT1G64660 ATMGL, methionine gamma-lyase, MGL, methionine gamma-lyase 0.309 -0.280
10 260560_at AT2G43590 [Chitinase family protein] 0.298 -2.391
11 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.296 -1.085
12 261470_at AT1G28370 ATERF11, ERF DOMAIN PROTEIN 11, ERF11, ERF domain protein 11 0.286 -0.542
13 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 0.279 -0.173
14 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.272 -1.113
15 265255_at AT2G28420 GLYI8, glyoxylase I 8 0.269 0.147
16 260335_at AT1G74000 SS3, strictosidine synthase 3 0.269 -0.446
17 263851_at AT2G04460 unknown 0.265 -0.173
18 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.253 -0.176
19 257947_at AT3G21720 ICL, isocitrate lyase 0.252 -0.173
20 248915_at AT5G45690 unknown 0.243 -0.173
21 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.236 0.720
22 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.234 -1.464
23 261073_at AT1G07300 [josephin protein-related] 0.234 -0.313
24 250821_at AT5G05190 unknown 0.225 -0.189
25 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.215 -0.963
26 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.213 -0.962
27 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.208 -2.530
28 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 0.207 0.434
29 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.203 -1.262
30 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.201 0.749
31 255844_at AT2G33580 LYK5, LysM-containing receptor-like kinase 5 0.198 -0.859
32 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.197 -1.234
33 252986_at AT4G38380 [MATE efflux family protein] 0.196 0.399
34 245070_at AT2G23240 AtMT4b, Arabidopsis thaliana metallothionein 4b 0.195 -0.173
35 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.192 -0.231
36 252400_at AT3G48020 unknown 0.191 -0.579
37 251621_at AT3G57700 [Protein kinase superfamily protein] 0.186 -0.173
38 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.179 -0.188
39 247177_at AT5G65300 unknown 0.176 -0.600
40 259143_at AT3G10190 [Calcium-binding EF-hand family protein] 0.175 -0.041
41 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 0.175 0.202
42 257645_at AT3G25790 [myb-like transcription factor family protein] 0.173 -0.173
43 267604_at AT2G32930 ZFN2, zinc finger nuclease 2 0.173 -0.243
44 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.173 -0.492
45 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b 0.171 0.124
46 248060_at AT5G55560 [Protein kinase superfamily protein] 0.171 0.008
47 261315_at AT1G53170 ATERF-8, ATERF8, ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ERF8, ethylene response factor 8 0.169 -0.334
48 248701_at AT5G48410 ATGLR1.3, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, GLR1.3, glutamate receptor 1.3 0.168 -1.516
49 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.167 -0.819
50 245126_at AT2G47460 ATMYB12, MYB DOMAIN PROTEIN 12, MYB12, myb domain protein 12, PFG1, PRODUCTION OF FLAVONOL GLYCOSIDES 1 0.166 -0.707
51 248730_at AT5G48050 unknown 0.163 -0.659
52 247753_at AT5G59070 [UDP-Glycosyltransferase superfamily protein] 0.163 0.152
53 249910_at AT5G22630 ADT5, arogenate dehydratase 5 0.160 -0.499
54 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.159 -1.322
55 247284_at AT5G64410 ATOPT4, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, OPT4, oligopeptide transporter 4 0.159 -0.148
56 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] 0.158 -0.326
57 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.158 0.419
58 247071_at AT5G66640 DAR3, DA1-related protein 3 0.157 -0.752
59 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA 0.156 -0.672
60 254479_at AT4G20350 [oxidoreductases] 0.156 0.224
61 252675_at AT3G44270 [copia-like retrotransposon family, has a 1.1e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.155 -0.173
62 260631_at AT1G62350 [Pentatricopeptide repeat (PPR) superfamily protein] 0.155 -0.266
63 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.155 -0.173
64 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 0.152 -0.351
65 251620_at AT3G58060 [Cation efflux family protein] 0.152 -0.173
66 252773_at AT3G42910 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1)] 0.152 -0.173
67 258808_at AT3G04050 [Pyruvate kinase family protein] 0.152 -0.434
68 261551_at AT1G63440 HMA5, heavy metal atpase 5 0.151 -1.156
69 257751_at AT3G18690 MKS1, MAP kinase substrate 1 0.151 -0.029
70 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] 0.149 -0.816
71 247441_at AT5G62710 [Leucine-rich repeat protein kinase family protein] 0.148 -0.435
72 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.942 -1.503
73 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 -0.876 -1.594
74 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.644 -0.968
75 264647_at AT1G09090 ATRBOHB, respiratory burst oxidase homolog B, ATRBOHB-BETA, RBOHB, respiratory burst oxidase homolog B -0.642 -0.173
76 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.641 1.038
77 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 -0.639 -0.195
78 252896_at AT4G39480 CYP96A9, cytochrome P450, family 96, subfamily A, polypeptide 9 -0.562 0.526
79 247431_at AT5G62520 SRO5, similar to RCD one 5 -0.545 -0.836
80 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.535 0.707
81 256527_at AT1G66100 [Plant thionin] -0.498 1.129
82 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.490 -0.038
83 253404_at AT4G32840 PFK6, phosphofructokinase 6 -0.472 -0.110
84 260668_at AT1G19530 unknown -0.452 3.645
85 257922_at AT3G23150 ETR2, ethylene response 2 -0.441 -2.773
86 259207_at AT3G09050 unknown -0.434 0.119
87 252193_at AT3G50060 MYB77, myb domain protein 77 -0.395 -0.529
88 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.374 0.105
89 267230_at AT2G44080 ARL, ARGOS-like -0.371 -1.844
90 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 -0.365 0.151
91 253887_at AT4G27730 ATOPT6, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, OPT6, oligopeptide transporter 1 -0.359 -0.849
92 257375_at AT2G38640 unknown -0.356 -0.023
93 249309_at AT5G41410 BEL1, BELL 1 -0.353 0.379
94 258091_at AT3G14560 unknown -0.345 -0.545
95 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.341 -0.621
96 250211_at AT5G13880 unknown -0.339 -0.520
97 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.336 0.268
98 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 -0.316 0.410
99 249384_at AT5G39890 unknown -0.311 -0.173
100 263558_at AT2G16380 [Sec14p-like phosphatidylinositol transfer family protein] -0.310 0.567
101 254200_at AT4G24110 unknown -0.309 -1.722
102 249211_at AT5G42680 unknown -0.299 -1.024
103 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.296 0.214
104 255955_at AT1G22030 unknown -0.293 0.120
105 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase -0.282 0.136
106 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 -0.280 0.400
107 262741_at AT1G28760 [Uncharacterized conserved protein (DUF2215)] -0.276 0.060
108 250152_at AT5G15120 unknown -0.274 -0.783
109 264800_at AT1G08800 MyoB1, myosin binding protein 1 -0.272 0.513
110 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.269 -0.087
111 266320_at AT2G46640 TAC1, Tiller Angle Control 1 -0.265 -0.145
112 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.262 -0.027
113 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 -0.258 -0.112
114 252419_at AT3G47510 unknown -0.256 -1.120
115 264561_at AT1G55810 UKL3, uridine kinase-like 3 -0.255 0.134
116 259853_at AT1G72300 PSY1R, PSY1 receptor -0.249 -0.315
117 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.249 -2.226
118 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.248 0.121
119 252905_at AT4G39720 [VQ motif-containing protein] -0.245 -1.209
120 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.245 -0.064
121 265025_at AT1G24575 unknown -0.243 -0.829
122 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 -0.238 -1.155
123 260395_at AT1G69780 ATHB13 -0.237 0.460
124 264277_at AT1G60390 PG1, polygalacturonase 1 -0.236 -0.419
125 266880_at AT2G44770 [ELMO/CED-12 family protein] -0.234 -0.055
126 254562_at AT4G19230 CYP707A1, cytochrome P450, family 707, subfamily A, polypeptide 1 -0.232 0.208
127 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 -0.231 0.641
128 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.230 0.533
129 261016_at AT1G26560 BGLU40, beta glucosidase 40 -0.230 0.770
130 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.222 -0.634
131 253987_at AT4G26270 PFK3, phosphofructokinase 3 -0.216 -0.580
132 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.214 0.553
133 249762_at AT5G24000 unknown -0.213 0.210
134 266956_at AT2G34510 unknown -0.209 0.077
135 253298_at AT4G33560 [Wound-responsive family protein] -0.209 -0.896
136 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 -0.208 -0.061
137 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.206 0.523
138 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.205 -0.093
139 255625_at AT4G01120 ATBZIP54, BASIC REGION/LEUCINE ZIPPER MOTIF 5, GBF2, G-box binding factor 2 -0.204 0.116
140 255807_at AT4G10270 [Wound-responsive family protein] -0.202 0.687
141 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.201 -0.079