4.0:Information of module
hda9 dryseed
In comparison with Col-0 INA 48h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000096 sulfur amino acid metabolic process BP 6.980e-12
GO:0006790 sulfur compound metabolic process BP 3.507e-11
GO:0044272 sulfur compound biosynthetic process BP 7.615e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009827 plant-type cell wall modification BP 2.242e-08
GO:0042545 cell wall modification BP 2.731e-08
GO:0009664 plant-type cell wall organization BP 6.978e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
hda9 dryseed		 Log2 signal ratio
Col-0 INA 48h
1 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.646 0.111
2 256603_at AT3G28270 unknown 0.559 0.078
3 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 0.498 -0.044
4 247151_at AT5G65640 bHLH093, beta HLH protein 93 0.483 -0.072
5 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.445 0.589
6 250498_at AT5G09660 PMDH2, peroxisomal NAD-malate dehydrogenase 2 0.434 -0.010
7 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 0.380 0.040
8 246149_at AT5G19890 [Peroxidase superfamily protein] 0.374 -0.050
9 249010_at AT5G44580 unknown 0.361 0.058
10 247640_at AT5G60610 [F-box/RNI-like superfamily protein] 0.343 -0.018
11 252591_at AT3G45600 TET3, tetraspanin3 0.335 -0.055
12 257922_at AT3G23150 ETR2, ethylene response 2 0.330 -0.014
13 254178_at AT4G23880 unknown 0.319 0.142
14 252115_at AT3G51600 LTP5, lipid transfer protein 5 0.317 -0.009
15 261023_at AT1G12200 FMO, flavin monooxygenase 0.311 0.148
16 265621_at AT2G27300 ANAC040, Arabidopsis NAC domain containing protein 40, NTL8, NTM1-like 8 0.310 0.005
17 253387_at AT4G33010 AtGLDP1, glycine decarboxylase P-protein 1, GLDP1, glycine decarboxylase P-protein 1 0.305 -0.034
18 265699_at AT2G03550 [alpha/beta-Hydrolases superfamily protein] 0.294 -0.088
19 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.294 -0.094
20 247344_at AT5G63750 ARI13, ARIADNE 13, ATARI13, ARABIDOPSIS ARIADNE 13 0.290 -0.031
21 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.287 -0.087
22 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 0.283 -0.009
23 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 0.283 -0.053
24 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.279 -0.137
25 257129_at AT3G20100 CYP705A19, cytochrome P450, family 705, subfamily A, polypeptide 19 0.278 0.010
26 247072_at AT5G66490 unknown 0.273 0.005
27 249000_at AT5G44980 [F-box/RNI-like/FBD-like domains-containing protein] 0.269 -0.004
28 259000_at AT3G01860 unknown 0.252 -0.026
29 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.247 0.048
30 256366_at AT1G66880 [Protein kinase superfamily protein] 0.247 0.564
31 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 0.247 0.009
32 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 0.240 0.054
33 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.237 0.117
34 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.235 0.609
35 252485_at AT3G46530 RPP13, RECOGNITION OF PERONOSPORA PARASITICA 13 0.234 0.112
36 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.228 0.169
37 247358_at AT5G63580 ATFLS2, FLS2, flavonol synthase 2 0.222 0.068
38 249486_at AT5G39030 [Protein kinase superfamily protein] 0.222 0.245
39 264867_at AT1G24150 ATFH4, FORMIN HOMOLOGUE 4, FH4, formin homologue 4 0.220 0.438
40 246055_at AT5G08380 AGAL1, alpha-galactosidase 1, AtAGAL1, alpha-galactosidase 1 0.216 0.161
41 267371_at AT2G44510 [CDK inhibitor P21 binding protein] 0.215 0.055
42 259084_at AT3G04800 ATTIM23-3, translocase inner membrane subunit 23-3, TIM23-3, translocase inner membrane subunit 23-3 0.212 -0.004
43 262736_at AT1G28570 [SGNH hydrolase-type esterase superfamily protein] 0.212 -0.100
44 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] 0.211 0.005
45 251070_at AT5G01940 [eukaryotic translation initiation factor 2B family protein / eIF-2B family protein] 0.209 0.002
46 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.209 0.016
47 261526_at AT1G14370 APK2A, protein kinase 2A, Kin1, kinase 1, PBL2, PBS1-like 2 0.208 0.150
48 255857_at AT1G67080 ABA4, abscisic acid (ABA)-deficient 4 0.199 -0.030
49 249719_at AT5G35735 [Auxin-responsive family protein] 0.198 0.054
50 259629_at AT1G56510 ADR2, ACTIVATED DISEASE RESISTANCE 2, WRR4, WHITE RUST RESISTANCE 4 0.197 0.198
51 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.193 -0.083
52 260166_at AT1G79840 GL2, GLABRA 2 0.192 -0.072
53 254630_at AT4G18360 GOX3, glycolate oxidase 3 0.189 0.002
54 258929_at AT3G10060 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.188 -0.087
55 264575_at AT1G05190 emb2394, embryo defective 2394 0.187 -0.050
56 263258_at AT1G10540 ATNAT8, NAT8, nucleobase-ascorbate transporter 8 0.186 0.016
57 266330_at AT2G01530 MLP329, MLP-like protein 329, ZCE2, (Zusammen-CA)-enhanced 2 0.185 -0.055
58 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.185 -0.159
59 249694_at AT5G35790 G6PD1, glucose-6-phosphate dehydrogenase 1 0.184 -0.019
60 248015_at AT5G56370 [F-box/RNI-like/FBD-like domains-containing protein] 0.182 -0.016
61 263787_at AT2G46420 unknown 0.182 0.081
62 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 0.181 -0.041
63 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.181 0.473
64 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 0.180 0.191
65 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.180 0.002
66 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER 0.179 -0.003
67 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.178 0.038
68 262988_at AT1G23310 AOAT1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, GGAT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, GGT1, glutamate:glyoxylate aminotransferase 0.178 0.033
69 246413_at AT1G77310 unknown 0.174 -0.050
70 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.174 -0.032
71 264958_at AT1G76960 unknown 0.162 0.346
72 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 0.162 0.055
73 256188_at AT1G30160 unknown 0.159 -0.051
74 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.159 0.329
75 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.158 0.388
76 262646_at AT1G62800 ASP4, aspartate aminotransferase 4 0.158 -0.025
77 261883_at AT1G80870 [Protein kinase superfamily protein] 0.152 0.044
78 260602_at AT1G55920 ATSERAT2;1, serine acetyltransferase 2;1, SAT1, SERINE ACETYLTRANSFERASE 1, SAT5, SERINE ACETYLTRANSFERASE 5, SERAT2;1, serine acetyltransferase 2;1 0.152 0.086
79 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.150 0.069
80 250475_at AT5G10180 AST68, ARABIDOPSIS SULFATE TRANSPORTER 68, SULTR2;1, sulfate transporter 2;1 0.149 -0.061
81 248021_at AT5G56500 Cpn60beta3, chaperonin-60beta3 0.148 0.057
82 266331_at AT2G01570 RGA, REPRESSOR OF GA, RGA1, REPRESSOR OF GA1-3 1 0.148 -0.052
83 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 0.148 -0.057
84 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 0.147 -0.026
85 262181_at AT1G78060 [Glycosyl hydrolase family protein] 0.146 -0.028
86 261692_at AT1G08450 AtCRT3, A. thaliana calreticulin 3, CRT3, calreticulin 3, EBS2, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, PSL1, PRIORITY IN SWEET LIFE 1 0.145 0.278
87 258281_at AT3G26900 ATSKL1, Arabidopsis thaliana shikimate kinase-like 1, SKL1, shikimate kinase-like 1 0.144 -0.048
88 248060_at AT5G55560 [Protein kinase superfamily protein] 0.144 0.140
89 251291_at AT3G61900 SAUR33, SMALL AUXIN UPREGULATED RNA 33 0.142 0.015
90 264260_at AT1G09210 AtCRT1b, CRT1b, calreticulin 1b 0.142 0.044
91 245516_at AT4G15820 unknown 0.142 -0.035
92 253219_at AT4G34990 AtMYB32, myb domain protein 32, MYB32, myb domain protein 32 0.140 -0.086
93 267530_at AT2G41890 [curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein] 0.140 0.044
94 258797_at AT3G04730 IAA16, indoleacetic acid-induced protein 16 0.139 -0.001
95 252649_at AT3G44680 AtHDA9, HDA09, HDA9, histone deacetylase 9 -0.765 -0.007
96 251246_at AT3G62100 IAA30, indole-3-acetic acid inducible 30 -0.554 -0.049
97 267295_at AT2G23800 GGPS2, geranylgeranyl pyrophosphate synthase 2, GGPS5, GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5 -0.550 -0.046
98 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.522 -0.037
99 254572_at AT4G19380 [Long-chain fatty alcohol dehydrogenase family protein] -0.469 0.061
100 265127_at AT1G55560 sks14, SKU5 similar 14 -0.432 -0.031
101 257298_at AT3G28155 unknown -0.425 -0.028
102 266129_at AT2G44990 ATCCD7, CCD7, carotenoid cleavage dioxygenase 7, MAX3 -0.421 -0.023
103 263465_at AT2G31940 unknown -0.421 -0.135
104 249569_at AT5G38070 [RING/FYVE/PHD zinc finger superfamily protein] -0.417 0.029
105 267476_at AT2G02720 [Pectate lyase family protein] -0.411 -0.045
106 266558_at AT2G23900 [Pectin lyase-like superfamily protein] -0.407 -0.008
107 245243_at AT1G44414 unknown -0.392 -0.127
108 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.378 0.067
109 264263_at AT1G09155 AtPP2-B15, phloem protein 2-B15, PP2-B15, phloem protein 2-B15 -0.361 0.006
110 260561_at AT2G43580 [Chitinase family protein] -0.324 -0.047
111 263151_at AT1G54120 unknown -0.321 -0.012
112 263450_at AT2G31500 CPK24, calcium-dependent protein kinase 24 -0.319 -0.035
113 249757_at AT5G24316 [proline-rich family protein] -0.312 -0.049
114 261752_at AT1G76290 [AMP-dependent synthetase and ligase family protein] -0.309 -0.051
115 248210_at AT5G54000 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.302 0.030
116 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.301 -0.110
117 248470_at AT5G50830 unknown -0.289 -0.045
118 246123_at AT5G20390 [Glycosyl hydrolase superfamily protein] -0.289 -0.009
119 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] -0.287 0.018
120 247804_at AT5G58170 GDPDL7, Glycerophosphodiester phosphodiesterase (GDPD) like 7, SVL5, SHV3-like 5 -0.283 -0.029
121 252933_at AT4G39110 [Malectin/receptor-like protein kinase family protein] -0.283 -0.030
122 256955_at AT3G13390 sks11, SKU5 similar 11 -0.282 -0.015
123 250661_at AT5G07030 [Eukaryotic aspartyl protease family protein] -0.282 -0.023
124 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.280 -0.017
125 246545_at AT5G15110 [Pectate lyase family protein] -0.280 0.024
126 246216_at AT4G36380 ROT3, ROTUNDIFOLIA 3 -0.274 -0.032
127 264973_at AT1G27040 AtNPF4.5, NPF4.5, NRT1/ PTR family 4.5 -0.273 -0.008
128 258796_at AT3G04630 WDL1, WVD2-like 1 -0.270 -0.059
129 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 -0.270 0.028
130 265080_at AT1G55570 sks12, SKU5 similar 12 -0.269 -0.054
131 266494_at AT2G07040 AtPRK2, ATPRK2A, PRK2, pollen receptor like kinase 2, PRK2A -0.269 -0.094
132 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.268 0.039
133 256392_at AT3G06260 GATL4, galacturonosyltransferase-like 4, GolS9, galactinol synthase 9 -0.267 -0.040
134 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.264 0.016
135 260888_at AT1G29140 [Pollen Ole e 1 allergen and extensin family protein] -0.263 -0.025
136 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 -0.261 -0.056
137 257392_at AT2G24450 FLA3, FASCICLIN-like arabinogalactan protein 3 precursor -0.260 -0.071
138 259820_at AT1G66210 [Subtilisin-like serine endopeptidase family protein] -0.259 -0.065
139 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.255 -0.194
140 253305_at AT4G33666 unknown -0.249 -0.068
141 251397_at AT3G60570 ATEXPB5, expansin B5, ATHEXP BETA 1.3, EXPB5, expansin B5 -0.249 -0.039
142 251293_at AT3G61930 unknown -0.249 -0.016
143 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.249 -0.024
144 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.248 -0.270
145 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.248 0.019
146 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.247 -0.053
147 250157_at AT5G15180 [Peroxidase superfamily protein] -0.247 -0.074
148 259707_at AT1G77490 TAPX, thylakoidal ascorbate peroxidase -0.246 -0.084
149 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 -0.246 0.253
150 246208_at AT4G36490 ATSFH12, SEC14-LIKE 12, SFH12, SEC14-like 12 -0.240 -0.058
151 250121_at AT5G16500 LIP1, LOST IN POLLEN TUBE GUIDANCE 1 -0.239 -0.053
152 245053_at AT2G26450 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.237 -0.043
153 265404_at AT2G16730 BGAL13, beta-galactosidase 13 -0.235 -0.046
154 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] -0.235 -0.094
155 261363_at AT1G41830 SKS6, SKU5 SIMILAR 6, SKS6, SKU5-similar 6 -0.233 0.018
156 248086_at AT5G55490 ATGEX1, GAMETE EXPRESSED PROTEIN 1, GEX1, gamete expressed protein 1 -0.233 0.009
157 263608_at AT2G16260 GR-RBP1, glycine-rich RNA-binding protein 1 -0.232 -0.005
158 259886_at AT1G76370 [Protein kinase superfamily protein] -0.230 -0.009
159 266100_at AT2G37980 [O-fucosyltransferase family protein] -0.229 0.142
160 253226_at AT4G35010 BGAL11, beta-galactosidase 11 -0.228 -0.029
161 247843_at AT5G58050 GDPDL6, Glycerophosphodiester phosphodiesterase (GDPD) like 6, SVL4, SHV3-like 4 -0.227 -0.029
162 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] -0.227 -0.233
163 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 -0.227 -0.184
164 261518_at AT1G71695 [Peroxidase superfamily protein] -0.226 -0.003
165 253575_at AT4G31060 [Integrase-type DNA-binding superfamily protein] -0.224 0.002
166 266126_at AT2G45040 [Matrixin family protein] -0.224 -0.066
167 260363_at AT1G70550 unknown -0.223 -0.029
168 252934_at AT4G39120 HISN7, HISTIDINE BIOSYNTHESIS 7, IMPL2, myo-inositol monophosphatase like 2 -0.222 -0.053
169 260812_at AT1G43650 UMAMIT22, Usually multiple acids move in and out Transporters 22 -0.221 -0.170
170 250308_at AT5G12180 CPK17, calcium-dependent protein kinase 17 -0.220 -0.020
171 259163_at AT3G01490 [Protein kinase superfamily protein] -0.219 -0.024
172 257288_at AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 -0.218 -0.109
173 254667_at AT4G18280 [glycine-rich cell wall protein-related] -0.218 0.014
174 249750_at AT5G24570 unknown -0.217 -0.066
175 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.216 -0.071
176 246761_at AT5G27980 [Seed maturation protein] -0.215 0.017
177 246516_at AT5G15740 [O-fucosyltransferase family protein] -0.214 -0.058
178 261169_at AT1G04920 ATSPS3F, sucrose phosphate synthase 3F, SPS3F, sucrose phosphate synthase 3F -0.213 -0.030
179 267041_at AT2G34315 [Avirulence induced gene (AIG1) family protein] -0.212 -0.062
180 245233_at AT4G25580 [CAP160 protein] -0.212 -0.013
181 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.211 -0.038
182 260841_at AT1G29195 unknown -0.209 -0.040
183 246841_at AT5G26700 [RmlC-like cupins superfamily protein] -0.209 0.235
184 248419_at AT5G51550 EXL3, EXORDIUM like 3 -0.209 -0.105
185 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] -0.208 -0.008
186 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] -0.207 -0.070
187 266503_at AT2G47780 [Rubber elongation factor protein (REF)] -0.204 -0.118
188 251250_at AT3G62180 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.203 -0.037