4.0:Information of module
Elevated CO2 LIMITING N NIGHT
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0055065 metal ion homeostasis BP 1.028e-05
GO:0098771 inorganic ion homeostasis BP 5.384e-05
GO:0055080 cation homeostasis BP 8.128e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005992 trehalose biosynthetic process BP 3.571e-06
GO:0005991 trehalose metabolic process BP 9.156e-06
GO:0043414 macromolecule methylation BP 9.243e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Elevated CO2 LIMITING N NIGHT		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.391 -0.658
2 255621_at AT4G01390 [TRAF-like family protein] 0.348 0.168
3 259968_at AT1G76530 [Auxin efflux carrier family protein] 0.334 -0.914
4 262232_at AT1G68600 [Aluminium activated malate transporter family protein] 0.288 -0.565
5 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.283 0.827
6 259766_at AT1G64360 unknown 0.275 -1.025
7 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.251 0.073
8 266778_at AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 0.237 0.997
9 261684_at AT1G47400 unknown 0.207 -0.422
10 264599_at AT1G04600 ATXIA, XIA, myosin XI A 0.198 -0.737
11 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 0.196 -1.008
12 254572_at AT4G19380 [Long-chain fatty alcohol dehydrogenase family protein] 0.182 -0.835
13 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.173 0.510
14 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.172 0.033
15 257950_at AT3G21780 UGT71B6, UDP-glucosyl transferase 71B6 0.164 0.012
16 252888_at AT4G39210 APL3 0.163 0.598
17 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 0.163 -0.139
18 248961_at AT5G45650 [subtilase family protein] 0.161 1.163
19 264693_at AT1G69970 CLE26, CLAVATA3/ESR-RELATED 26 0.159 -1.096
20 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.159 0.035
21 245588_at AT4G15030 unknown 0.157 0.115
22 247212_at AT5G65040 unknown 0.156 -0.782
23 258293_at AT3G23430 ATPHO1, ARABIDOPSIS PHOSPHATE 1, PHO1, phosphate 1 0.154 -0.052
24 248270_at AT5G53450 ORG1, OBP3-responsive gene 1 0.153 -0.458
25 250248_at AT5G13740 ZIF1, zinc induced facilitator 1 0.153 0.194
26 250152_at AT5G15120 unknown 0.149 0.246
27 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] 0.149 0.033
28 251875_at AT3G54270 [sucrose-6F-phosphate phosphohydrolase family protein] 0.145 -0.767
29 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.143 0.930
30 255726_at AT1G25530 [Transmembrane amino acid transporter family protein] 0.141 -0.092
31 259520_at AT1G12320 unknown 0.140 -0.747
32 256694_at AT3G32080 unknown 0.139 -0.661
33 247775_at AT5G58690 ATPLC5, PLC5, phosphatidylinositol-speciwc phospholipase C5 0.136 -0.270
34 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 0.133 -0.412
35 259116_at AT3G01350 [Major facilitator superfamily protein] 0.130 -1.299
36 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.127 -1.104
37 260148_at AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.127 -0.612
38 261073_at AT1G07300 [josephin protein-related] 0.124 -1.025
39 255243_at AT4G05590 unknown 0.123 -1.220
40 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 0.123 -0.419
41 259015_at AT3G07350 unknown -0.305 -0.384
42 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 -0.303 -1.236
43 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.291 0.240
44 265922_at AT2G18480 [Major facilitator superfamily protein] -0.267 -0.943
45 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.253 0.752
46 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 -0.251 0.588
47 248377_at AT5G51720 At-NEET, NEET, NEET group protein -0.237 0.241
48 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 -0.235 0.922
49 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -0.232 0.343
50 256818_at AT3G21420 LBO1, LATERAL BRANCHING OXIDOREDUCTASE 1 -0.227 0.305
51 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.222 0.007
52 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.212 0.376
53 263831_at AT2G40300 ATFER4, ferritin 4, FER4, ferritin 4 -0.205 0.537
54 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.204 -0.203
55 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 -0.196 0.444
56 263840_at AT2G36885 unknown -0.195 0.761
57 263495_at AT2G42530 COR15B, cold regulated 15b -0.192 -0.025
58 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B -0.188 -0.363
59 250565_at AT5G08000 E13L3, glucan endo-1,3-beta-glucosidase-like protein 3, PDCB2, PLASMODESMATA CALLOSE-BINDING PROTEIN 2 -0.187 0.203
60 265085_at AT1G03780 AtTPX2, TPX2, targeting protein for XKLP2 -0.184 -0.501
61 252698_at AT3G43670 [Copper amine oxidase family protein] -0.181 0.662
62 247734_at AT5G59400 unknown -0.179 0.722
63 255142_at AT4G08390 SAPX, stromal ascorbate peroxidase -0.179 1.123
64 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 -0.174 -0.546
65 249645_at AT5G36910 THI2.2, thionin 2.2 -0.172 0.273
66 250217_at AT5G14120 [Major facilitator superfamily protein] -0.172 0.439
67 261660_at AT1G18370 ATNACK1, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, HIK, HINKEL, NACK1, NPK1-ACTIVATING KINESIN 1 -0.172 0.525
68 252105_at AT3G51470 [Protein phosphatase 2C family protein] -0.167 0.744
69 245465_at AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 -0.159 -0.185
70 257670_at AT3G20340 unknown -0.157 -0.492
71 253850_at AT4G28090 sks10, SKU5 similar 10 -0.155 -0.694
72 254168_at AT4G24250 ATMLO13, MILDEW RESISTANCE LOCUS O 13, MLO13, MILDEW RESISTANCE LOCUS O 13 -0.155 -1.408
73 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 -0.154 0.217
74 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 -0.153 0.561
75 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS -0.152 0.474
76 263151_at AT1G54120 unknown -0.150 -0.287
77 254482_at AT4G20370 TSF, TWIN SISTER OF FT -0.149 -0.197
78 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.149 -0.591
79 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 -0.149 0.509