4.0:Information of module
Elevated CO2 AMPLE N DAY
In comparison with Dark 6h ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009627 systemic acquired resistance BP 2.998e-76
GO:0002376 immune system process BP 2.101e-71
GO:0009814 defense response, incompatible interacti... BP 4.414e-71
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048509 regulation of meristem development BP 2.043e-06
GO:0035266 meristem growth BP 3.377e-06
GO:0010075 regulation of meristem growth BP 2.151e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Elevated CO2 AMPLE N DAY		 Log2 signal ratio
Dark 6h ivd
1 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.818 0.945
2 264648_at AT1G09080 BIP3, binding protein 3 0.685 -2.028
3 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 0.647 1.361
4 260568_at AT2G43570 CHI, chitinase, putative 0.630 0.248
5 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.607 0.201
6 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.589 1.507
7 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.510 2.917
8 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.495 1.657
9 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.480 -0.792
10 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.422 -0.290
11 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 0.412 -0.728
12 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.402 0.493
13 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.402 1.330
14 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.398 1.239
15 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 0.358 0.487
16 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.349 -0.343
17 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.344 -0.368
18 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.328 1.362
19 251621_at AT3G57700 [Protein kinase superfamily protein] 0.312 -0.158
20 245193_at AT1G67810 SUFE2, sulfur E2 0.307 3.125
21 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.300 -1.479
22 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.297 0.810
23 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.292 -0.592
24 249346_at AT5G40780 LHT1, lysine histidine transporter 1 0.280 2.224
25 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.274 0.876
26 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.270 -1.224
27 266761_at AT2G47130 AtSDR3, SDR3, short-chain dehydrogenase/reductase 2 0.264 1.370
28 259489_at AT1G15790 unknown 0.259 1.551
29 245052_at AT2G26440 PME12, pectin methylesterase 12 0.259 1.865
30 247604_at AT5G60950 COBL5, COBRA-like protein 5 precursor 0.251 0.614
31 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 0.248 2.062
32 255595_at AT4G01700 [Chitinase family protein] 0.246 0.352
33 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.242 0.528
34 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.242 1.680
35 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.240 2.980
36 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 0.238 2.201
37 248322_at AT5G52760 [Copper transport protein family] 0.234 0.734
38 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.232 1.271
39 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.231 -1.382
40 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 0.228 -1.375
41 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.224 -0.085
42 252170_at AT3G50480 HR4, homolog of RPW8 4 0.222 1.855
43 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.221 1.249
44 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] 0.216 -1.234
45 259443_at AT1G02360 [Chitinase family protein] 0.215 0.136
46 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.214 1.481
47 258787_at AT3G11840 PUB24, plant U-box 24 0.210 0.794
48 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 0.209 2.293
49 259250_at AT3G07580 unknown 0.204 0.419
50 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.204 1.962
51 251232_at AT3G62780 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.202 0.428
52 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.202 0.607
53 251840_at AT3G54960 ATPDI1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, ATPDIL1-3, PDI-like 1-3, PDI1, PROTEIN DISULFIDE ISOMERASE 1, PDIL1-3, PDI-like 1-3 0.201 0.293
54 252117_at AT3G51430 SSL5, STRICTOSIDINE SYNTHASE-LIKE 5, YLS2, YELLOW-LEAF-SPECIFIC GENE 2 0.199 2.783
55 247800_at AT5G58570 unknown 0.196 0.844
56 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] 0.190 0.286
57 248698_at AT5G48380 BIR1, BAK1-interacting receptor-like kinase 1 0.189 1.429
58 259911_at AT1G72680 ATCAD1, CINNAMYL ALCOHOL DEHYDROGENASE 1, CAD1, cinnamyl-alcohol dehydrogenase 0.185 1.670
59 254190_at AT4G23885 unknown 0.184 1.379
60 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.272 -5.149
61 256302_at AT1G69526 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.259 -3.274
62 250327_at AT5G12050 unknown -0.247 1.293
63 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 -0.245 -0.816
64 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.226 -0.645
65 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.225 -3.792
66 247055_at AT5G66740 unknown -0.221 -5.282
67 247581_at AT5G61350 [Protein kinase superfamily protein] -0.219 -4.289
68 250478_at AT5G10250 DOT3, DEFECTIVELY ORGANIZED TRIBUTARIES 3 -0.213 -3.501
69 251130_at AT5G01180 AtNPF8.2, ATPTR5, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, NPF8.2, NRT1/ PTR family 8.2, PTR5, peptide transporter 5 -0.209 0.221
70 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 -0.207 -2.689
71 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.204 -2.414
72 260831_at AT1G06830 [Glutaredoxin family protein] -0.203 -3.624
73 257547_at AT3G13000 unknown -0.195 -1.366
74 266760_at AT2G46870 NGA1, NGATHA1 -0.194 -0.356
75 262737_at AT1G28560 SRD2, SHOOT REDIFFERENTIATION DEFECTIVE 2 -0.187 -1.584
76 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.187 -0.578
77 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] -0.187 -4.838
78 266918_at AT2G45800 PLIM2a, PLIM2a -0.185 -0.792
79 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.184 -0.786
80 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.183 -0.074
81 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.181 -0.725
82 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.179 -0.613
83 254683_at AT4G13800 unknown -0.178 -2.005
84 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.176 0.292
85 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.174 1.739
86 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] -0.172 -5.865
87 247878_at AT5G57760 unknown -0.172 -2.813
88 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.171 -4.541
89 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.167 -0.684
90 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.167 0.121
91 262688_at AT1G62680 [Pentatricopeptide repeat (PPR) superfamily protein] -0.166 -0.411
92 261596_at AT1G33080 [MATE efflux family protein] -0.164 0.417
93 266321_at AT2G46660 CYP78A6, cytochrome P450, family 78, subfamily A, polypeptide 6, EOD3, enhancer of da1-1 -0.163 -3.684
94 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.163 2.096
95 248443_at AT5G51310 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.163 -2.826
96 258935_at AT3G10120 unknown -0.161 1.359
97 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.155 -1.242
98 247880_at AT5G57780 P1R1, P1R1 -0.153 -0.887
99 247287_at AT5G64230 unknown -0.152 0.458
100 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.150 -3.304
101 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.150 -2.971
102 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.148 -0.441
103 266507_at AT2G47860 SETH6 -0.148 0.563
104 267273_at AT2G02520 [RNA-directed DNA polymerase (reverse transcriptase)-related family protein] -0.147 -0.158
105 248646_at AT5G49100 unknown -0.143 -1.726
106 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] -0.140 1.073
107 265892_at AT2G15020 unknown -0.137 -7.132
108 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.137 -1.042
109 266038_at AT2G07680 ABCC13, ATP-binding cassette C13, ATMRP11, multidrug resistance-associated protein 11, MRP11, multidrug resistance-associated protein 11 -0.136 -0.850
110 250162_at AT5G15250 ATFTSH6, FTSH6, FTSH protease 6 -0.135 0.754
111 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.135 -1.105
112 266508_at AT2G47920 NET3C, Networked 3C -0.134 0.505
113 261521_at AT1G71830 ATSERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1, SERK1, somatic embryogenesis receptor-like kinase 1 -0.134 -0.987
114 249006_at AT5G44660 unknown -0.133 -0.920
115 253062_at AT4G37590 MEL1, MAB4/ENP/NPY1-LIKE 1, NPY5, NAKED PINS IN YUC MUTANTS 5 -0.129 0.225
116 263136_at AT1G78580 ATTPS1, trehalose-6-phosphate synthase, TPS1, trehalose-6-phosphate synthase, TPS1, TREHALOSE-6-PHOSPHATE SYNTHASE 1 -0.128 -0.141
117 260717_at AT1G48120 [hydrolases] -0.128 -0.020