4.0:Information of module
COL-0-Fe--shoot
In comparison with FarRed Light 45min  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 1.540e-14
GO:0009718 anthocyanin-containing compound biosynth... BP 2.102e-13
GO:0046283 anthocyanin-containing compound metaboli... BP 1.012e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.697e-09
GO:1901700 response to oxygen-containing compound BP 1.913e-09
GO:0009750 response to fructose BP 3.535e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
COL-0-Fe--shoot		 Log2 signal ratio
FarRed Light 45min
1 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 1.567 0.040
2 245692_at AT5G04150 BHLH101 1.468 0.027
3 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 1.400 0.005
4 261684_at AT1G47400 unknown 1.307 -0.037
5 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 1.185 -0.131
6 257421_at AT1G12030 unknown 1.144 -0.026
7 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.134 0.064
8 263402_at AT2G04050 [MATE efflux family protein] 1.080 0.004
9 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 1.071 -0.042
10 250828_at AT5G05250 unknown 0.890 -0.016
11 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.848 -0.025
12 263515_at AT2G21640 unknown 0.806 -0.009
13 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.790 0.001
14 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.758 -0.031
15 246913_at AT5G25830 GATA12, GATA transcription factor 12 0.758 -0.059
16 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 0.738 -0.013
17 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 0.711 -0.029
18 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 0.693 -0.013
19 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.689 -0.032
20 260522_x_at AT2G41730 unknown 0.687 0.016
21 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.671 0.003
22 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.663 -0.082
23 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.649 -0.003
24 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] 0.642 0.013
25 266729_at AT2G03130 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] 0.628 -0.036
26 263544_at AT2G21590 APL4 0.621 0.005
27 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.613 0.009
28 263401_at AT2G04070 [MATE efflux family protein] 0.597 0.028
29 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.586 -0.044
30 265600_at AT2G14230 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.580 0.002
31 248270_at AT5G53450 ORG1, OBP3-responsive gene 1 0.577 -0.009
32 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.576 0.008
33 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.570 -0.006
34 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.569 -0.005
35 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like 0.568 0.010
36 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.554 -0.028
37 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.549 -0.040
38 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.548 0.054
39 266618_at AT2G35480 unknown 0.545 -0.014
40 256924_at AT3G29590 AT5MAT 0.527 -0.029
41 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 0.519 -0.165
42 245296_at AT4G16370 oligopeptide transporter 0.514 0.019
43 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 0.500 -0.046
44 257062_at AT3G18290 BTS, BRUTUS, EMB2454, embryo defective 2454 0.499 -0.017
45 248467_at AT5G50800 AtSWEET13, SWEET13 0.490 -0.038
46 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.490 -0.005
47 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.489 -0.001
48 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.488 -0.043
49 245196_at AT1G67750 [Pectate lyase family protein] 0.479 0.018
50 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.468 -0.036
51 248125_at AT5G54740 SESA5, seed storage albumin 5 0.455 -0.051
52 262091_at AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 0.443 0.001
53 247001_at AT5G67330 ATNRAMP4, ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4, natural resistance associated macrophage protein 4 0.441 -0.020
54 258170_at AT3G21600 [Senescence/dehydration-associated protein-related] 0.439 0.001
55 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.435 -0.204
56 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.433 -0.010
57 252427_at AT3G47640 PYE, POPEYE 0.430 -0.014
58 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 0.425 -0.000
59 258029_at AT3G27580 ATPK7, D6PKL3, D6 PROTEIN KINASE LIKE 3 0.420 -0.036
60 248321_at AT5G52740 [Copper transport protein family] 0.413 -0.026
61 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.412 0.028
62 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 0.406 -0.074
63 257689_at AT3G12820 AtMYB10, myb domain protein 10, MYB10, myb domain protein 10 0.402 0.045
64 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.398 0.038
65 255056_at AT4G09820 AtTT8, BHLH42, TT8, TRANSPARENT TESTA 8 0.386 -0.010
66 246125_at AT5G19875 unknown 0.381 -0.103
67 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] 0.380 -0.090
68 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.370 -0.041
69 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 0.365 -0.070
70 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.364 0.042
71 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 0.361 0.002
72 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.348 -0.021
73 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.348 0.024
74 255294_at AT4G04750 [Major facilitator superfamily protein] 0.347 -0.039
75 259143_at AT3G10190 [Calcium-binding EF-hand family protein] 0.346 -0.008
76 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 0.346 -0.006
77 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 0.327 0.016
78 257517_at AT3G16330 unknown 0.319 -0.025
79 247989_at AT5G56350 [Pyruvate kinase family protein] 0.319 -0.026
80 264931_at AT1G60590 [Pectin lyase-like superfamily protein] 0.317 -0.037
81 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.317 -0.004
82 260917_at AT1G02700 unknown 0.310 -0.013
83 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.307 -0.016
84 252938_at AT4G39190 unknown 0.307 0.033
85 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.304 0.058
86 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.301 -0.022
87 251503_at AT3G59140 ABCC10, ATP-binding cassette C10, ATMRP14, multidrug resistance-associated protein 14, MRP14, multidrug resistance-associated protein 14 0.300 0.011
88 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.300 0.001
89 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -1.326 0.017
90 251196_at AT3G62950 [Thioredoxin superfamily protein] -1.004 0.010
91 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.919 -0.020
92 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 -0.909 0.005
93 263831_at AT2G40300 ATFER4, ferritin 4, FER4, ferritin 4 -0.905 -0.003
94 263840_at AT2G36885 unknown -0.871 0.000
95 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 -0.870 -0.020
96 248377_at AT5G51720 At-NEET, NEET, NEET group protein -0.869 -0.016
97 252698_at AT3G43670 [Copper amine oxidase family protein] -0.816 -0.019
98 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.795 -0.019
99 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -0.761 -0.019
100 254764_at AT4G13250 NYC1, NON-YELLOW COLORING 1 -0.754 0.007
101 264211_at AT1G22770 FB, GI, GIGANTEA -0.732 -0.042
102 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.713 0.063
103 256469_at AT1G32540 LOL1, lsd one like 1 -0.701 -0.007
104 265387_at AT2G20670 unknown -0.679 0.031
105 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.673 0.023
106 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.669 0.081
107 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.655 0.019
108 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] -0.649 -0.003
109 248952_at AT5G45410 unknown -0.647 -0.037
110 255305_at AT4G04770 ABC1, ATP binding cassette protein 1, ABCI8, ATP-binding cassette I8, ATABC1, ATP binding cassette protein 1, ATNAP1, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, LAF6, LONG AFTER FR -0.640 0.016
111 258939_at AT3G10020 unknown -0.622 -0.024
112 259982_at AT1G76410 ATL8 -0.620 0.002
113 247071_at AT5G66640 DAR3, DA1-related protein 3 -0.617 -0.020
114 260744_at AT1G15010 unknown -0.605 0.037
115 264788_at AT2G17880 DJC24, DNA J protein C24 -0.598 0.041
116 262277_at AT1G68650 [Uncharacterized protein family (UPF0016)] -0.598 0.053
117 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 -0.589 -0.009
118 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.584 -0.016
119 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.576 -0.044
120 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.573 0.023
121 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.539 0.070
122 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.532 -0.042
123 257088_at AT3G20510 [Transmembrane proteins 14C] -0.526 0.012
124 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.525 0.024
125 260431_at AT1G68190 BBX27, B-box domain protein 27 -0.519 0.106
126 264777_at AT1G08630 THA1, threonine aldolase 1 -0.515 0.043
127 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.513 0.008
128 253126_at AT4G36050 [endonuclease/exonuclease/phosphatase family protein] -0.507 0.012
129 259015_at AT3G07350 unknown -0.501 0.000
130 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.496 -0.022
131 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.480 0.007
132 263118_at AT1G03090 MCCA -0.480 0.024
133 264561_at AT1G55810 UKL3, uridine kinase-like 3 -0.477 0.011
134 262879_at AT1G64860 RPOD1, SIG1, RNA POLYMERASE SIGMA SUBUNIT 1, SIG2, RNApolymerase sigma subunit 2, SIGA, sigma factor A, SIGB -0.457 0.058
135 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.456 -0.011
136 253141_at AT4G35440 ATCLC-E, CLC-E, chloride channel E, CLCE, CHLORIDE CHANNEL E -0.452 0.031
137 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] -0.446 0.020
138 250270_at AT5G12980 [Cell differentiation, Rcd1-like protein] -0.442 -0.034
139 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 -0.427 0.001
140 254103_at AT4G25030 unknown -0.422 -0.019
141 261395_at AT1G79700 WRI4, WRINKLED 4 -0.419 0.051
142 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -0.413 -0.111
143 264280_at AT1G61820 BGLU46, beta glucosidase 46 -0.411 0.093
144 253393_at AT4G32690 ATGLB3, ARABIDOPSIS HEMOGLOBIN 3, GLB3, hemoglobin 3 -0.410 0.007
145 250879_at AT5G04060 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.407 -0.009
146 251243_at AT3G61870 unknown -0.400 0.022
147 247899_at AT5G57345 unknown -0.399 -0.027
148 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.397 0.052
149 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.397 -0.004
150 246393_at AT1G58150 unknown -0.393 -0.002
151 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] -0.393 0.049
152 256965_at AT3G13450 DIN4, DARK INDUCIBLE 4 -0.385 0.029
153 265680_at AT2G32150 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.384 -0.004
154 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.382 0.038
155 253195_at AT4G35420 DRL1, dihydroflavonol 4-reductase-like1, TKPR1, tetraketide alpha-pyrone reductase 1 -0.379 0.019
156 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] -0.379 0.036
157 251919_at AT3G53800 Fes1B, Fes1B -0.379 0.011
158 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.378 -0.003
159 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] -0.377 0.048
160 266163_at AT2G28130 unknown -0.375 0.008
161 267477_at AT2G02710 PLP, PAS/LOV PROTEIN, PLPA, PAS/LOV PROTEIN A, PLPB, PAS/LOV protein B, PLPC, PAS/LOV PROTEIN C -0.370 0.048
162 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.368 0.018
163 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 -0.367 -0.002
164 260486_at AT1G51550 [Kelch repeat-containing F-box family protein] -0.362 -0.029
165 260536_at AT2G43400 ETFQO, electron-transfer flavoprotein:ubiquinone oxidoreductase -0.361 0.005
166 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.361 0.060
167 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE -0.358 0.032
168 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 -0.356 -0.026
169 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] -0.353 0.009
170 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.352 -0.006
171 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] -0.347 0.041
172 261292_at AT1G36940 unknown -0.343 0.035
173 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 -0.342 0.002
174 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] -0.341 0.011
175 247754_at AT5G59080 unknown -0.341 0.045