4.0:Information of module
Chemically
In comparison with seed germinating in countinuous light 48 h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 3.285e-12
GO:0009741 response to brassinosteroid BP 7.423e-09
GO:0009725 response to hormone BP 9.552e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 9.043e-42
GO:0010053 root epidermal cell differentiation BP 5.742e-41
GO:0090627 plant epidermal cell differentiation BP 1.904e-40
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Chemically		 Log2 signal ratio
seed germinating in countinuous light 48 h SL
1 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 0.728 -0.470
2 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.573 -0.543
3 259735_at AT1G64405 unknown 0.557 -0.016
4 246798_at AT5G26930 GATA23, GATA transcription factor 23 0.556 0.415
5 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.523 -0.668
6 245140_at AT2G45420 LBD18, LOB domain-containing protein 18 0.505 -0.752
7 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.477 -0.778
8 266611_at AT2G14960 GH3.1 0.431 -0.602
9 249992_at AT5G18560 PUCHI 0.425 -1.293
10 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.425 -0.544
11 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.410 0.011
12 257824_at AT3G25290 [Auxin-responsive family protein] 0.379 0.678
13 253047_at AT4G37295 unknown 0.377 -0.255
14 264527_at AT1G30760 [FAD-binding Berberine family protein] 0.373 0.181
15 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.366 -0.134
16 263360_at AT2G03830 GLV6, GOLVEN 6, RGF8, root meristem growth factor 8 0.358 -0.974
17 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.349 -0.548
18 245196_at AT1G67750 [Pectate lyase family protein] 0.341 0.502
19 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.336 -0.205
20 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 0.329 -0.034
21 257386_at AT2G42440 ASL15, ASYMMETRIC LEAVES 2-like 15, LBD17, LOB domain-containing protein 17 0.325 0.212
22 267590_at AT2G39700 ATEXP4, ATEXPA4, expansin A4, ATHEXP ALPHA 1.6, EXPA4, expansin A4 0.312 0.548
23 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.312 1.028
24 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.306 -0.088
25 257244_at AT3G24240 [Leucine-rich repeat receptor-like protein kinase family protein] 0.299 0.991
26 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.287 -0.102
27 248253_at AT5G53290 CRF3, cytokinin response factor 3 0.285 0.677
28 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.284 -1.037
29 252988_at AT4G38410 [Dehydrin family protein] 0.282 0.596
30 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 0.275 0.824
31 248279_at AT5G52910 ATIM, TIMELESS 0.272 0.594
32 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like 0.266 -0.958
33 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.265 -0.071
34 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.264 0.170
35 247179_at AT5G65320 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.263 -0.493
36 262373_at AT1G73120 unknown 0.263 0.696
37 254689_at AT4G13710 [Pectin lyase-like superfamily protein] 0.262 0.563
38 246652_at AT5G35190 EXT13, extensin 13 -0.909 1.265
39 261157_at AT1G34510 [Peroxidase superfamily protein] -0.817 1.132
40 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.780 0.029
41 253763_at AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 -0.766 0.217
42 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.744 0.933
43 249934_at AT5G22410 RHS18, root hair specific 18 -0.738 1.496
44 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.685 1.225
45 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.658 0.924
46 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.650 0.672
47 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.626 0.801
48 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.622 1.250
49 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.621 0.516
50 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.547 0.407
51 258765_at AT3G10710 RHS12, root hair specific 12 -0.534 0.332
52 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 -0.534 0.341
53 252238_at AT3G49960 [Peroxidase superfamily protein] -0.523 0.472
54 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.522 1.334
55 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.519 0.551
56 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.513 0.544
57 266356_at AT2G32300 UCC1, uclacyanin 1 -0.502 0.003
58 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.484 0.258
59 253613_at AT4G30320 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.483 0.717
60 250778_at AT5G05500 MOP10 -0.472 1.483
61 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.469 0.358
62 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.467 0.130
63 253998_at AT4G26010 [Peroxidase superfamily protein] -0.465 0.762
64 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.456 0.489
65 254718_at AT4G13580 [Disease resistance-responsive (dirigent-like protein) family protein] -0.454 0.621
66 249227_at AT5G42180 PER64, peroxidase 64 -0.446 0.634
67 263437_at AT2G28670 ESB1, ENHANCED SUBERIN 1 -0.444 0.470
68 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.439 -0.295
69 263227_at AT1G30750 unknown -0.437 0.227
70 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 -0.430 -0.310
71 255516_at AT4G02270 RHS13, root hair specific 13 -0.428 1.182
72 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.421 0.919
73 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.420 0.143