4.0:Information of module
spx1 spx2 no Pi
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 1.778e-21
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 3.234e-19
GO:0019684 photosynthesis, light reaction BP 4.474e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009718 anthocyanin-containing compound biosynth... BP 7.383e-07
GO:0046283 anthocyanin-containing compound metaboli... BP 2.072e-06
GO:0009813 flavonoid biosynthetic process BP 2.539e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
spx1 spx2 no Pi		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 0.433 -1.133
2 245023_at ATCG00080 PSBI, photosystem II reaction center protein I 0.326 0.281
3 256779_at AT3G13784 AtcwINV5, cell wall invertase 5, CWINV5, cell wall invertase 5 0.306 -0.399
4 253421_at AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.293 0.306
5 255621_at AT4G01390 [TRAF-like family protein] 0.273 0.168
6 264958_at AT1G76960 unknown 0.258 -0.727
7 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.248 0.638
8 245531_at AT4G15100 scpl30, serine carboxypeptidase-like 30 0.247 -0.492
9 249850_at AT5G23240 DJC76, DNA J protein C76 0.222 -0.913
10 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.222 1.226
11 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.206 -0.212
12 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.192 -0.823
13 257271_at AT3G28007 AtSWEET4, SWEET4 0.191 -1.288
14 256672_at AT3G52310 ABCG27, ATP-binding cassette G27 0.191 -0.018
15 261567_at AT1G33055 unknown 0.190 0.578
16 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.190 -1.428
17 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.188 0.168
18 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.179 -0.756
19 264636_at AT1G65490 unknown 0.174 -0.749
20 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 0.172 0.079
21 258351_at AT3G17700 ATCNGC20, CYCLIC NUCLEOTIDE-GATED CHANNEL 20, CNBT1, cyclic nucleotide-binding transporter 1, CNGC20, cyclic nucleotide gated channel 20 0.170 0.444
22 262463_at AT1G50310 ATSTP9, SUGAR TRANSPORTER 9, STP9, sugar transporter 9 0.168 -0.110
23 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.166 0.582
24 264363_at AT1G03170 FAF2, FANTASTIC FOUR 2, FTM5, FLORAL TRANSITION AT THE MERISTEM5 0.161 -0.181
25 261754_at AT1G76130 AMY2, alpha-amylase-like 2, ATAMY2, ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2 0.160 -0.473
26 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 0.160 -0.487
27 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.159 -0.205
28 244967_at ATCG00630 PSAJ 0.157 0.379
29 249486_at AT5G39030 [Protein kinase superfamily protein] 0.157 -1.143
30 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.157 -0.110
31 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.154 0.286
32 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.154 -0.992
33 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.152 -0.241
34 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 0.152 0.572
35 264646_at AT1G08860 BON3, BONZAI 3 0.151 -0.486
36 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.151 -0.726
37 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.151 -1.235
38 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.151 -0.362
39 252648_at AT3G44630 [Disease resistance protein (TIR-NBS-LRR class) family] 0.151 0.054
40 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.146 -0.311
41 260134_at AT1G66370 AtMYB113, myb domain protein 113, MYB113, myb domain protein 113 0.145 0.290
42 246321_at AT1G16640 [AP2/B3-like transcriptional factor family protein] 0.143 -1.026
43 258100_at AT3G23550 [MATE efflux family protein] 0.142 -0.557
44 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 0.142 -1.145
45 261638_at AT1G49975 [INVOLVED IN: photosynthesis] 0.141 0.296
46 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.140 -0.496
47 249889_at AT5G22540 unknown 0.138 -0.658
48 253066_at AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 0.138 -0.828
49 246942_at AT5G25430 [HCO3- transporter family] 0.137 -1.305
50 248962_at AT5G45680 ATFKBP13, FK506 BINDING PROTEIN 13, FKBP13, FK506-binding protein 13 0.137 1.105
51 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 0.136 1.281
52 264635_at AT1G65500 unknown 0.136 0.205
53 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 0.136 -0.914
54 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.135 0.444
55 251100_at AT5G01670 [NAD(P)-linked oxidoreductase superfamily protein] 0.134 0.682
56 250453_at AT5G10620 [methyltransferases] 0.133 -0.441
57 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.133 -0.763
58 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.132 -0.843
59 264379_at AT2G25200 unknown 0.132 -0.836
60 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.132 -1.104
61 247899_at AT5G57345 unknown 0.131 0.770
62 262140_at AT1G52470 [alpha/beta-Hydrolases superfamily protein] 0.130 -0.477
63 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.128 -0.251
64 262508_at AT1G11300 [protein serine/threonine kinases] 0.128 -0.730
65 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] 0.126 0.383
66 263287_at AT2G36145 unknown 0.125 0.351
67 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 0.122 -0.871
68 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.121 -1.101
69 264738_at AT1G62250 unknown 0.121 -0.560
70 247623_at AT5G60320 LecRK-I.11, L-type lectin receptor kinase I.11 0.120 -0.274
71 266483_at AT2G47910 CRR6, chlororespiratory reduction 6 0.120 0.595
72 258534_at AT3G06730 TRX P, thioredoxin putative plastidic, TRX z, Thioredoxin z 0.119 0.326
73 254588_at AT4G18840 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.119 -0.630
74 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.413 1.007
75 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 -0.407 -1.276
76 258741_at AT3G05790 LON4, lon protease 4 -0.372 -0.957
77 256603_at AT3G28270 unknown -0.329 -0.453
78 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.323 -0.458
79 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.315 -0.308
80 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 -0.292 -1.074
81 256577_at AT3G28220 [TRAF-like family protein] -0.275 -0.621
82 263232_at AT1G05700 [Leucine-rich repeat transmembrane protein kinase protein] -0.270 -0.489
83 258172_at AT3G21620 [ERD (early-responsive to dehydration stress) family protein] -0.265 -0.901
84 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 -0.227 0.261
85 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.224 -0.231
86 267611_at AT2G26660 ATSPX2, ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX2, SPX domain gene 2 -0.220 0.515
87 252266_at AT3G49630 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.213 -0.592
88 258901_at AT3G05640 [Protein phosphatase 2C family protein] -0.200 -0.131
89 258932_at AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -0.199 -0.167
90 252568_at AT3G45410 LecRK-I.3, L-type lectin receptor kinase I.3 -0.183 -0.571
91 250472_at AT5G10210 unknown -0.183 -0.898
92 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.181 -0.783
93 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.178 -0.500
94 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -0.173 0.044
95 263285_at AT2G36120 DOT1, DEFECTIVELY ORGANIZED TRIBUTARIES 1 -0.171 -0.456
96 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.170 -0.628
97 266507_at AT2G47860 SETH6 -0.168 -1.423
98 246342_at AT3G56700 AtFAR6, FAR6, fatty acid reductase 6 -0.166 -1.364
99 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.162 -0.196
100 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.159 0.195
101 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 -0.158 -1.251
102 252380_at AT3G47740 ABCA3, ATP-binding cassette A3, ATATH2, A. THALIANA ABC2 HOMOLOG 2, ATH2, ABC2 homolog 2 -0.158 -0.118
103 247447_at AT5G62730 [Major facilitator superfamily protein] -0.154 -0.223
104 255111_at AT4G08780 [Peroxidase superfamily protein] -0.153 -0.928
105 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.153 0.495
106 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.152 -0.568
107 254536_at AT4G19720 [Glycosyl hydrolase family protein with chitinase insertion domain] -0.151 -1.236
108 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 -0.146 -0.065
109 261985_at AT1G33750 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.146 -0.246
110 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 -0.145 -0.344
111 252537_at AT3G45710 [Major facilitator superfamily protein] -0.144 -0.486
112 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.144 -0.196
113 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] -0.143 0.644
114 250443_at AT5G10520 RBK1, ROP binding protein kinases 1 -0.143 -0.135
115 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.138 -0.463
116 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.138 0.881
117 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.137 0.617
118 253741_at AT4G28890 [RING/U-box superfamily protein] -0.137 -0.476
119 265031_at AT1G61590 [Protein kinase superfamily protein] -0.135 0.111
120 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.135 -0.657
121 264525_at AT1G10060 ATBCAT-1, branched-chain amino acid transaminase 1, BCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1 -0.135 -0.496
122 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 -0.135 -0.635
123 254834_at AT4G12300 CYP706A4, cytochrome P450, family 706, subfamily A, polypeptide 4 -0.132 0.431
124 248306_at AT5G52830 ATWRKY27, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY27, WRKY DNA-binding protein 27 -0.131 0.097
125 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 -0.129 0.146
126 260846_at AT1G17300 unknown -0.128 -1.402
127 265688_at AT2G24300 [Calmodulin-binding protein] -0.127 0.629
128 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] -0.125 0.727
129 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.122 -0.036
130 251025_at AT5G02190 ATASP38, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, EMB24, EMBRYO DEFECTIVE 24, PCS1, PROMOTION OF CELL SURVIVAL 1 -0.121 -0.350
131 253054_at AT4G37580 COP3, CONSTITUTIVE PHOTOMORPHOGENIC 3, HLS1, HOOKLESS 1, UNS2, UNUSUAL SUGAR RESPONSE 2 -0.121 0.881
132 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.121 -0.114
133 247570_at AT5G61250 AtGUS1, glucuronidase 1, GUS1, glucuronidase 1 -0.117 0.105
134 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 -0.116 -1.195
135 260774_at AT1G78290 SNRK2-8, SNF1-RELATED PROTEIN KINASE 2-8, SNRK2.8, SNF1-RELATED PROTEIN KINASE 2.8, SRK2C, SNF1-RELATED PROTEIN KINASE 2C -0.116 0.555
136 249599_at AT5G37990 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.116 -0.370
137 256358_at AT1G66470 AtRHD6, RHD6, ROOT HAIR DEFECTIVE6 -0.116 0.588
138 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.115 -0.340
139 249415_at AT5G39660 CDF2, cycling DOF factor 2 -0.115 0.374
140 260148_at AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.113 -0.612
141 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 -0.113 0.380
142 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.113 -0.791
143 259854_at AT1G72200 [RING/U-box superfamily protein] -0.113 -0.208
144 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue -0.112 0.409
145 254631_at AT4G18610 LSH9, LIGHT SENSITIVE HYPOCOTYLS 9 -0.108 -1.184