4.0:Information of module
ddm1-2
In comparison with Shoot apex transition (before bolting) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901605 alpha-amino acid metabolic process BP 5.415e-05
GO:1901607 alpha-amino acid biosynthetic process BP 1.047e-04
GO:0008652 cellular amino acid biosynthetic process BP 3.231e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048868 pollen tube development BP 9.267e-07
GO:0009856 pollination BP 1.807e-06
GO:0044706 multi-multicellular organism process BP 1.807e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ddm1-2		 Log2 signal ratio
Shoot apex transition (before bolting)
1 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.617 0.186
2 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.610 -0.429
3 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.605 -0.737
4 255246_at AT4G05640 unknown 1.569 -1.031
5 266151_x_at AT2G12300 [CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.541 0.676
6 261186_at AT1G34530 [CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.492 -0.854
7 245203_at AT3G33080 unknown 1.435 -1.106
8 262268_at AT1G42410 [CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.365 -1.120
9 263293_x_at AT2G10880 [hypothetical protein, similar to hypothetical protein GB:AAC26673] 1.335 -1.042
10 256748_x_at AT3G30396 [CACTA-like transposase family (Ptta/En/Spm), has a 3.1e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.277 0.436
11 257110_x_at AT3G30440 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.268 -0.613
12 255313_at AT4G04590 [CACTA-like transposase family (Tnp2/En/Spm), has a 5.3e-36 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 1.252 -0.208
13 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 1.241 -0.183
14 262902_x_at AT1G59930 [MADS-box family protein] 1.235 -0.281
15 263479_x_at AT2G04000 unknown 1.227 -0.136
16 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] 1.218 -0.237
17 249259_at AT5G41660 unknown 1.173 0.183
18 258302_at AT3G30610 unknown 1.143 0.031
19 253707_at AT4G29200 [Beta-galactosidase related protein] 1.125 0.196
20 245032_at AT2G26630 [transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain] 1.050 -0.775
21 257777_x_at AT3G29210 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.049 -0.076
22 257111_x_at AT3G30450 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1)] 1.042 -0.735
23 246640_x_at AT5G34900 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1)] 1.038 0.403
24 263307_at AT2G12520 unknown 1.025 -0.198
25 246639_x_at AT5G34895 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] 1.025 -0.547
26 250979_at AT5G03090 unknown 1.023 -0.220
27 261235_x_at AT1G32840 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.014 0.496
28 259572_at AT1G20400 unknown 1.001 -0.863
29 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.898 0.188
30 249030_at AT5G44880 unknown 0.849 -0.026
31 264995_at AT1G67240 [Mutator-like transposase family, has a 4.5e-23 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.820 -0.438
32 255917_at AT5G28560 unknown 0.757 -0.582
33 256449_at AT1G33460 [Mutator-like transposase family, has a 3.6e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.755 -0.728
34 248949_at AT5G45570 [Ulp1 protease family protein] 0.746 -0.535
35 249114_at AT5G43800 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.665 0.388
36 255932_at AT1G12720 [Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.657 -0.316
37 258370_at AT3G14395 unknown 0.651 -0.399
38 260188_at AT1G35995 [Mutator-like transposase family, has a 4.4e-38 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.626 -1.045
39 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.625 0.293
40 257354_x_at AT2G23480 unknown 0.621 -1.042
41 255120_x_at AT4G08890 [Mutator-like transposase family, has a 5.6e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)] 0.614 -0.905
42 262256_at AT1G53810 [copia-like retrotransposon family, has a 8.0e-248 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.581 -0.805
43 249737_at AT5G24480 [Beta-galactosidase related protein] 0.577 0.517
44 262034_at AT1G37080 [similar to myb family protein [Arabidopsis thaliana] (TAIR:AT2G22710.1)] 0.564 -1.095
45 263817_at AT2G10070 unknown 0.561 -0.960
46 255463_at AT4G02960 ATRE2, retro element 2, RE2, retro element 2 0.559 -0.819
47 254671_at AT4G18410 [Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.549 -0.117
48 255476_at AT4G02490 [non-LTR retrotransposon family (LINE), has a 2.3e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)] 0.483 0.491
49 263273_x_at AT2G11590 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.468 -1.343
50 267440_at AT2G19070 SHT, spermidine hydroxycinnamoyl transferase 0.402 -0.847
51 258716_at AT3G09700 [Chaperone DnaJ-domain superfamily protein] 0.392 0.827
52 267411_at AT2G34930 [disease resistance family protein / LRR family protein] 0.379 -1.069
53 259686_at AT1G63100 [GRAS family transcription factor] 0.374 0.370
54 261285_at AT1G35720 ANN1, annexin 1, ANNAT1, annexin 1, AtANN1, ATOXY5, OXY5 0.366 0.274
55 257469_at AT1G49290 unknown -1.067 -0.803
56 262282_at AT1G68610 PCR11, PLANT CADMIUM RESISTANCE 11 -1.037 -0.976
57 248918_at AT5G45890 AtSAG12, SAG12, senescence-associated gene 12 -1.013 -1.136
58 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.895 -0.772
59 259464_at AT1G18990 unknown -0.874 -0.015
60 257119_at AT3G20190 PRK4, pollen receptor like kinase 4 -0.861 -0.977
61 251697_at AT3G56600 [Protein kinase superfamily protein] -0.839 -0.705
62 246123_at AT5G20390 [Glycosyl hydrolase superfamily protein] -0.833 -0.381
63 257804_at AT3G18810 AtPERK6, proline-rich extensin-like receptor kinase 6, PERK6, proline-rich extensin-like receptor kinase 6 -0.779 -0.143
64 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.737 -0.509
65 259886_at AT1G76370 [Protein kinase superfamily protein] -0.699 -1.606
66 245232_at AT4G25590 ADF7, actin depolymerizing factor 7 -0.693 -0.380
67 246789_at AT5G27600 ATLACS7, LACS7, long-chain acyl-CoA synthetase 7 -0.662 0.874
68 250121_at AT5G16500 LIP1, LOST IN POLLEN TUBE GUIDANCE 1 -0.653 -0.554
69 245057_at AT2G26490 [Transducin/WD40 repeat-like superfamily protein] -0.653 -0.310
70 250466_at AT5G10090 TPR13, tetratricopeptide repeat 13 -0.640 -0.007
71 245193_at AT1G67810 SUFE2, sulfur E2 -0.632 -0.226
72 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.630 -0.843
73 255835_at AT2G33420 unknown -0.629 -0.200
74 266453_at AT2G43230 [Protein kinase superfamily protein] -0.623 0.237
75 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.621 -0.657
76 256021_at AT1G58270 ZW9 -0.605 -0.339
77 262620_at AT1G06540 unknown -0.601 0.061
78 263062_at AT2G18180 [Sec14p-like phosphatidylinositol transfer family protein] -0.597 -1.382
79 254829_at AT4G12530 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.590 0.258
80 256506_at AT1G75160 unknown -0.581 0.244
81 260737_at AT1G17540 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.576 -0.699
82 245345_at AT4G16640 [Matrixin family protein] -0.566 -1.012
83 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.562 -1.006
84 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.543 -0.754
85 254762_at AT4G13230 [Late embryogenesis abundant protein (LEA) family protein] -0.543 -0.162
86 247547_at AT5G61360 unknown -0.539 -0.701
87 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.539 -0.600
88 249194_at AT5G42490 [ATP binding microtubule motor family protein] -0.514 -1.014
89 267081_at AT2G41210 PIP5K5, phosphatidylinositol- 4-phosphate 5-kinase 5 -0.505 0.419
90 260193_at AT1G67640 [Transmembrane amino acid transporter family protein] -0.497 0.316
91 264139_at AT1G78940 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.493 -1.391
92 265681_at AT2G24370 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.493 -0.214
93 267438_at AT2G19050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.492 -0.664
94 267322_at AT2G19330 PIRL6, plant intracellular ras group-related LRR 6 -0.486 -0.467
95 252531_at AT3G46520 ACT12, actin-12 -0.470 -0.639
96 259338_at AT3G03800 ATSYP131, SYP131, syntaxin of plants 131 -0.467 -0.245
97 257951_at AT3G21700 ATSGP2, SGP2 -0.464 -0.452
98 259451_at AT1G13890 ATSNAP30, SNAP30, soluble N-ethylmaleimide-sensitive factor adaptor protein 30 -0.454 -0.994
99 256261_at AT3G12160 ATRABA4D, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RABA4D, RAB GTPase homolog A4D -0.427 -0.123
100 256782_at AT3G13660 [Disease resistance-responsive (dirigent-like protein) family protein] -0.423 -0.738
101 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] -0.420 -0.299
102 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] -0.418 -1.113
103 251293_at AT3G61930 unknown -0.412 -1.086
104 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] -0.403 -0.682
105 245119_at AT2G41640 [Glycosyltransferase family 61 protein] -0.400 -1.154
106 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 -0.397 -0.426
107 256833_at AT3G22910 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.392 0.143