4.0:Information of module
ddm1-2
In comparison with Shoot dark control 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901605 alpha-amino acid metabolic process BP 5.415e-05
GO:1901607 alpha-amino acid biosynthetic process BP 1.047e-04
GO:0008652 cellular amino acid biosynthetic process BP 3.231e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048868 pollen tube development BP 9.267e-07
GO:0009856 pollination BP 1.807e-06
GO:0044706 multi-multicellular organism process BP 1.807e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ddm1-2		 Log2 signal ratio
Shoot dark control 24h
1 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.617 -0.045
2 263675_x_at AT2G04770 [CACTA-like transposase family (Ptta/En/Spm), has a 6.0e-20 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.610 0.031
3 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.605 0.037
4 255246_at AT4G05640 unknown 1.569 0.006
5 266151_x_at AT2G12300 [CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-41 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.541 -0.007
6 261186_at AT1G34530 [CACTA-like transposase family (Ptta/En/Spm), has a 7.8e-116 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.492 0.058
7 245203_at AT3G33080 unknown 1.435 0.014
8 262268_at AT1G42410 [CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.365 0.037
9 263293_x_at AT2G10880 [hypothetical protein, similar to hypothetical protein GB:AAC26673] 1.335 0.011
10 256748_x_at AT3G30396 [CACTA-like transposase family (Ptta/En/Spm), has a 3.1e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 1.277 -0.041
11 257110_x_at AT3G30440 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.268 0.053
12 255313_at AT4G04590 [CACTA-like transposase family (Tnp2/En/Spm), has a 5.3e-36 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 1.252 0.019
13 255376_x_at AT4G03790 [gypsy-like retrotransposon family (Athila), has a 2.2e-286 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 1.241 0.021
14 262902_x_at AT1G59930 [MADS-box family protein] 1.235 -0.161
15 263479_x_at AT2G04000 unknown 1.227 0.071
16 262031_x_at AT1G37160 [gypsy-like retrotransposon family (Athila), similar to putative Athila retroelement ORF1 protein GI:4567296 from (Arabidopsis thaliana)] 1.218 -0.024
17 249259_at AT5G41660 unknown 1.173 0.038
18 258302_at AT3G30610 unknown 1.143 0.082
19 253707_at AT4G29200 [Beta-galactosidase related protein] 1.125 0.040
20 245032_at AT2G26630 [transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain] 1.050 -0.062
21 257777_x_at AT3G29210 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.049 0.048
22 257111_x_at AT3G30450 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1)] 1.042 -0.016
23 246640_x_at AT5G34900 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1)] 1.038 0.034
24 263307_at AT2G12520 unknown 1.025 0.143
25 246639_x_at AT5G34895 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] 1.025 0.026
26 250979_at AT5G03090 unknown 1.023 0.044
27 261235_x_at AT1G32840 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 1.014 0.127
28 259572_at AT1G20400 unknown 1.001 0.093
29 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.898 0.044
30 249030_at AT5G44880 unknown 0.849 0.051
31 264995_at AT1G67240 [Mutator-like transposase family, has a 4.5e-23 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.820 -0.000
32 255917_at AT5G28560 unknown 0.757 -0.033
33 256449_at AT1G33460 [Mutator-like transposase family, has a 3.6e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.755 0.078
34 248949_at AT5G45570 [Ulp1 protease family protein] 0.746 0.021
35 249114_at AT5G43800 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.665 -0.047
36 255932_at AT1G12720 [Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.657 0.003
37 258370_at AT3G14395 unknown 0.651 -0.895
38 260188_at AT1G35995 [Mutator-like transposase family, has a 4.4e-38 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.626 0.045
39 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.625 0.432
40 257354_x_at AT2G23480 unknown 0.621 -0.026
41 255120_x_at AT4G08890 [Mutator-like transposase family, has a 5.6e-82 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)] 0.614 0.079
42 262256_at AT1G53810 [copia-like retrotransposon family, has a 8.0e-248 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.581 0.011
43 249737_at AT5G24480 [Beta-galactosidase related protein] 0.577 0.065
44 262034_at AT1G37080 [similar to myb family protein [Arabidopsis thaliana] (TAIR:AT2G22710.1)] 0.564 0.011
45 263817_at AT2G10070 unknown 0.561 -0.022
46 255463_at AT4G02960 ATRE2, retro element 2, RE2, retro element 2 0.559 0.026
47 254671_at AT4G18410 [Mutator-like transposase family, has a 8.7e-30 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.549 -0.038
48 255476_at AT4G02490 [non-LTR retrotransposon family (LINE), has a 2.3e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)] 0.483 0.062
49 263273_x_at AT2G11590 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.468 0.048
50 267440_at AT2G19070 SHT, spermidine hydroxycinnamoyl transferase 0.402 0.056
51 258716_at AT3G09700 [Chaperone DnaJ-domain superfamily protein] 0.392 -0.195
52 267411_at AT2G34930 [disease resistance family protein / LRR family protein] 0.379 -0.446
53 259686_at AT1G63100 [GRAS family transcription factor] 0.374 -0.322
54 261285_at AT1G35720 ANN1, annexin 1, ANNAT1, annexin 1, AtANN1, ATOXY5, OXY5 0.366 -0.069
55 257469_at AT1G49290 unknown -1.067 0.069
56 262282_at AT1G68610 PCR11, PLANT CADMIUM RESISTANCE 11 -1.037 0.063
57 248918_at AT5G45890 AtSAG12, SAG12, senescence-associated gene 12 -1.013 0.015
58 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.895 0.147
59 259464_at AT1G18990 unknown -0.874 0.115
60 257119_at AT3G20190 PRK4, pollen receptor like kinase 4 -0.861 0.035
61 251697_at AT3G56600 [Protein kinase superfamily protein] -0.839 0.059
62 246123_at AT5G20390 [Glycosyl hydrolase superfamily protein] -0.833 0.089
63 257804_at AT3G18810 AtPERK6, proline-rich extensin-like receptor kinase 6, PERK6, proline-rich extensin-like receptor kinase 6 -0.779 0.041
64 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.737 0.041
65 259886_at AT1G76370 [Protein kinase superfamily protein] -0.699 0.012
66 245232_at AT4G25590 ADF7, actin depolymerizing factor 7 -0.693 -0.064
67 246789_at AT5G27600 ATLACS7, LACS7, long-chain acyl-CoA synthetase 7 -0.662 0.403
68 250121_at AT5G16500 LIP1, LOST IN POLLEN TUBE GUIDANCE 1 -0.653 0.040
69 245057_at AT2G26490 [Transducin/WD40 repeat-like superfamily protein] -0.653 0.086
70 250466_at AT5G10090 TPR13, tetratricopeptide repeat 13 -0.640 -0.038
71 245193_at AT1G67810 SUFE2, sulfur E2 -0.632 0.383
72 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.630 1.169
73 255835_at AT2G33420 unknown -0.629 0.038
74 266453_at AT2G43230 [Protein kinase superfamily protein] -0.623 0.050
75 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.621 0.034
76 256021_at AT1G58270 ZW9 -0.605 0.061
77 262620_at AT1G06540 unknown -0.601 -0.060
78 263062_at AT2G18180 [Sec14p-like phosphatidylinositol transfer family protein] -0.597 0.063
79 254829_at AT4G12530 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.590 0.038
80 256506_at AT1G75160 unknown -0.581 0.084
81 260737_at AT1G17540 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.576 0.072
82 245345_at AT4G16640 [Matrixin family protein] -0.566 0.011
83 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.562 0.725
84 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.543 -0.013
85 254762_at AT4G13230 [Late embryogenesis abundant protein (LEA) family protein] -0.543 0.037
86 247547_at AT5G61360 unknown -0.539 0.088
87 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.539 0.014
88 249194_at AT5G42490 [ATP binding microtubule motor family protein] -0.514 -0.022
89 267081_at AT2G41210 PIP5K5, phosphatidylinositol- 4-phosphate 5-kinase 5 -0.505 0.291
90 260193_at AT1G67640 [Transmembrane amino acid transporter family protein] -0.497 -0.009
91 264139_at AT1G78940 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.493 -0.053
92 265681_at AT2G24370 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.493 0.066
93 267438_at AT2G19050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.492 -0.009
94 267322_at AT2G19330 PIRL6, plant intracellular ras group-related LRR 6 -0.486 0.068
95 252531_at AT3G46520 ACT12, actin-12 -0.470 -0.049
96 259338_at AT3G03800 ATSYP131, SYP131, syntaxin of plants 131 -0.467 0.089
97 257951_at AT3G21700 ATSGP2, SGP2 -0.464 -0.225
98 259451_at AT1G13890 ATSNAP30, SNAP30, soluble N-ethylmaleimide-sensitive factor adaptor protein 30 -0.454 0.047
99 256261_at AT3G12160 ATRABA4D, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RABA4D, RAB GTPase homolog A4D -0.427 0.044
100 256782_at AT3G13660 [Disease resistance-responsive (dirigent-like protein) family protein] -0.423 -0.003
101 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] -0.420 0.180
102 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] -0.418 0.865
103 251293_at AT3G61930 unknown -0.412 -0.055
104 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] -0.403 -0.020
105 245119_at AT2G41640 [Glycosyltransferase family 61 protein] -0.400 0.690
106 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 -0.397 0.192
107 256833_at AT3G22910 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.392 0.063