4.0:Information of module
GO5; 8h switch to ambient CO2 concentrations;
In comparison with cov1 cov2 stem Top help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 3.090e-37
GO:0050896 response to stimulus BP 2.296e-33
GO:0010033 response to organic substance BP 1.364e-32
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.411e-19
GO:0016226 iron-sulfur cluster assembly BP 4.985e-16
GO:0031163 metallo-sulfur cluster assembly BP 4.985e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
GO5; 8h switch to ambient CO2 concentrations;		 Log2 signal ratio
cov1 cov2 stem Top
1 263402_at AT2G04050 [MATE efflux family protein] 1.445 -0.002
2 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 1.331 0.382
3 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 1.124 -0.100
4 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 1.113 -0.013
5 266752_at AT2G47000 ABCB4, ATP-binding cassette B4, AtABCB4, ATPGP4, ARABIDOPSIS P-GLYCOPROTEIN 4, MDR4, MULTIDRUG RESISTANCE 4, PGP4, P-GLYCOPROTEIN 4 1.112 -0.308
6 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 1.046 -0.007
7 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 1.028 -0.078
8 263061_at AT2G18190 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.988 -0.145
9 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.982 -0.237
10 247573_at AT5G61160 AACT1, anthocyanin 5-aromatic acyltransferase 1 0.974 -0.081
11 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.972 -0.101
12 263401_at AT2G04070 [MATE efflux family protein] 0.967 -0.103
13 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.962 -0.209
14 260522_x_at AT2G41730 unknown 0.944 -0.113
15 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.941 -0.126
16 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 0.893 -0.084
17 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] 0.878 -0.021
18 259947_at AT1G71530 [Protein kinase superfamily protein] 0.839 -0.085
19 246584_at AT5G14730 unknown 0.831 -0.205
20 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.830 -0.075
21 253044_at AT4G37290 unknown 0.829 -0.237
22 251772_at AT3G55920 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.828 0.164
23 252539_at AT3G45730 unknown 0.817 -0.310
24 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.807 -0.074
25 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.806 -0.098
26 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.785 -0.087
27 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.773 -0.084
28 261394_at AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 0.771 -0.236
29 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.764 0.013
30 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.756 -0.049
31 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 0.742 -0.105
32 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.737 -0.076
33 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.732 -0.513
34 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 0.722 -0.071
35 253796_at AT4G28460 unknown 0.702 -0.121
36 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.700 0.446
37 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.695 -0.437
38 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.685 -0.153
39 262213_at AT1G74870 [RING/U-box superfamily protein] 0.678 0.033
40 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.678 -0.500
41 265725_at AT2G32030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.676 -0.509
42 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.674 -0.751
43 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.662 -0.063
44 247071_at AT5G66640 DAR3, DA1-related protein 3 0.655 -0.059
45 245193_at AT1G67810 SUFE2, sulfur E2 0.654 -0.396
46 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.636 -0.012
47 245082_at AT2G23270 unknown 0.632 -0.071
48 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 0.627 -0.028
49 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.625 -0.036
50 261763_at AT1G15520 ABCG40, ATP-binding cassette G40, ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12 0.617 -0.076
51 264832_at AT1G03660 [Ankyrin-repeat containing protein] 0.616 0.137
52 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 0.610 -0.079
53 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.598 0.141
54 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.596 -0.072
55 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.588 -0.225
56 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.585 -0.100
57 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.585 -0.422
58 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.576 0.135
59 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.572 -0.055
60 265723_at AT2G32140 [transmembrane receptors] 0.571 -0.046
61 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.570 -0.067
62 251096_at AT5G01550 LecRK-VI.3, L-type lectin receptor kinase VI.3, LECRKA4.2, lectin receptor kinase a4.1 0.569 -0.054
63 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.567 -0.110
64 267559_at AT2G45570 CYP76C2, cytochrome P450, family 76, subfamily C, polypeptide 2 0.563 -0.003
65 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.559 -0.111
66 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.558 -0.096
67 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.552 -0.113
68 249896_at AT5G22530 unknown 0.550 0.002
69 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.550 -0.023
70 255430_at AT4G03320 AtTic20-IV, translocon at the inner envelope membrane of chloroplasts 20-IV, Tic20-IV, translocon at the inner envelope membrane of chloroplasts 20-IV 0.540 -0.006
71 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.540 0.051
72 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.538 -0.617
73 263515_at AT2G21640 unknown 0.536 0.168
74 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.535 -0.173
75 245119_at AT2G41640 [Glycosyltransferase family 61 protein] 0.531 -0.364
76 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.525 -0.121
77 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.514 -0.259
78 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] 0.511 -0.124
79 248924_at AT5G45960 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.344 0.702
80 251480_at AT3G59710 [NAD(P)-binding Rossmann-fold superfamily protein] -0.280 -0.032
81 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.277 0.452
82 251730_at AT3G56330 [N2,N2-dimethylguanosine tRNA methyltransferase] -0.275 0.119
83 257275_at AT3G14450 CID9, CTC-interacting domain 9 -0.260 0.145
84 252105_at AT3G51470 [Protein phosphatase 2C family protein] -0.250 0.086
85 261203_at AT1G12845 unknown -0.241 0.792
86 256761_at AT3G25670 [Leucine-rich repeat (LRR) family protein] -0.237 0.037
87 250198_at AT5G14100 ABCI11, ATP-binding cassette I11, ATNAP14, ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, NAP14, non-intrinsic ABC protein 14 -0.235 0.175
88 260125_at AT1G36390 [Co-chaperone GrpE family protein] -0.232 0.392
89 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 -0.229 0.133
90 249129_at AT5G43080 CYCA3;1, Cyclin A3;1 -0.226 0.296
91 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] -0.224 0.401
92 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 -0.219 -0.308
93 251704_at AT3G56360 unknown -0.219 -0.534
94 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.217 0.665
95 261790_at AT1G16000 unknown -0.216 0.358
96 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.214 -0.043
97 247179_at AT5G65320 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.210 -0.091
98 255232_at AT4G05330 AGD13, ARF-GAP domain 13 -0.209 0.108
99 257047_at AT3G19570 QWRF1, QWRF domain containing 1, SCO3, SNOWY COTYLEDON 3 -0.208 0.061
100 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.207 0.397
101 250828_at AT5G05250 unknown -0.206 -0.675
102 258708_at AT3G09580 [FAD/NAD(P)-binding oxidoreductase family protein] -0.206 0.136
103 259160_at AT3G05410 [Photosystem II reaction center PsbP family protein] -0.205 0.022
104 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 -0.205 0.538
105 259683_at AT1G63050 AtLPLAT2, LPCAT2, lysophosphatidylcholine acyltransferase 2, LPLAT2, lysophospholipid acyltransferase 2 -0.204 0.120
106 258630_at AT3G02820 [zinc knuckle (CCHC-type) family protein] -0.202 0.277
107 264963_at AT1G60600 ABC4, ABERRANT CHLOROPLAST DEVELOPMENT 4 -0.201 0.284
108 249425_at AT5G39790 5'-AMP-activated protein kinase-related -0.200 0.143
109 257813_at AT3G25100 CDC45, cell division cycle 45 -0.200 0.089
110 260028_at AT1G29980 unknown -0.196 0.779
111 259526_at AT1G12570 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.195 1.102
112 245884_at AT5G09300 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] -0.194 0.262
113 265994_at AT2G24170 [Endomembrane protein 70 protein family] -0.192 -0.153
114 248605_at AT5G49410 unknown -0.192 -0.008
115 266889_at AT2G44640 unknown -0.192 0.481
116 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.192 0.124
117 248507_at AT5G50420 [O-fucosyltransferase family protein] -0.192 0.055
118 256741_at AT3G29375 [XH domain-containing protein] -0.191 0.213
119 249162_at AT5G42765 unknown -0.190 0.144
120 267586_at AT2G41950 unknown -0.190 0.201
121 256320_at AT3G12170 [Chaperone DnaJ-domain superfamily protein] -0.188 0.381
122 249612_at AT5G37290 [ARM repeat superfamily protein] -0.188 0.012
123 248341_at AT5G52220 unknown -0.188 0.079
124 249948_at AT5G19210 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.187 0.112
125 263442_at AT2G28605 [Photosystem II reaction center PsbP family protein] -0.187 0.121
126 250512_at AT5G09995 unknown -0.186 0.173
127 249554_at AT5G38290 [Peptidyl-tRNA hydrolase family protein] -0.185 0.144
128 255031_at AT4G09490 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.184 -0.016
129 252603_at AT3G45050 unknown -0.183 0.110
130 244934_at ATCG01080 NDHG -0.182 -0.142
131 256872_at AT3G26490 [Phototropic-responsive NPH3 family protein] -0.182 -0.415
132 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.182 -0.107
133 258283_at AT3G26750 unknown -0.180 0.171
134 260009_at AT1G67950 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.177 0.245
135 247292_at AT5G64490 [ARM repeat superfamily protein] -0.177 -0.083
136 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 -0.177 -0.047
137 256585_at AT3G28760 unknown -0.176 0.069
138 255825_at AT2G40475 ASG8, ALTERED SEED GERMINATION 8 -0.176 0.660
139 248753_at AT5G47630 mtACP3, mitochondrial acyl carrier protein 3 -0.175 0.051
140 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 -0.175 -0.049
141 257750_at AT3G18800 unknown -0.174 0.303
142 257134_at AT3G12870 unknown -0.174 0.242
143 250383_at AT5G11480 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.173 0.170
144 266662_at AT2G25830 [YebC-related] -0.172 0.362
145 251414_at AT3G60370 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.171 0.173
146 245133_at AT2G45310 GAE4, UDP-D-glucuronate 4-epimerase 4 -0.169 0.225
147 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] -0.169 0.176
148 252312_at AT3G49380 iqd15, IQ-domain 15 -0.169 -0.047
149 248186_at AT5G53880 unknown -0.168 0.179
150 248789_at AT5G47440 unknown -0.166 0.054
151 245380_at AT4G17760 [damaged DNA binding] -0.166 0.003
152 248751_at AT5G47540 [Mo25 family protein] -0.165 0.118
153 249826_at AT5G23310 FSD3, Fe superoxide dismutase 3 -0.165 0.597
154 248135_at AT5G54890 mCSF2, mitochondrial CAF-like splicing factor 2 -0.165 -0.061
155 258003_at AT3G29030 ATEXP5, ARABIDOPSIS THALIANA EXPANSIN 5, ATEXPA5, ARABIDOPSIS THALIANA EXPANSIN A5, ATHEXP ALPHA 1.4, EXP5, EXPANSIN 5, EXPA5, expansin A5 -0.164 0.589