4.0:Information of module
Wt-BA-sample
In comparison with Dark 3day wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 8.014e-08
GO:0009725 response to hormone BP 1.640e-07
GO:0009755 hormone-mediated signaling pathway BP 3.479e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 8.737e-14
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 8.737e-14
GO:0046173 polyol biosynthetic process BP 1.049e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Wt-BA-sample		 Log2 signal ratio
Dark 3day wt
1 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.838 -1.027
2 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.753 -0.966
3 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.750 -2.049
4 262915_at AT1G59940 ARR3, response regulator 3 0.672 -0.049
5 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.672 -0.049
6 264404_at AT2G25160 CYP82F1, cytochrome P450, family 82, subfamily F, polypeptide 1 0.631 -0.049
7 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.549 -1.652
8 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.538 0.193
9 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.537 5.933
10 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.531 -1.877
11 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.518 -0.049
12 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.503 -2.332
13 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.490 2.478
14 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 0.482 -0.049
15 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 0.442 -0.049
16 257271_at AT3G28007 AtSWEET4, SWEET4 0.428 2.320
17 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 0.425 -1.514
18 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.422 3.811
19 245353_at AT4G16000 unknown 0.416 1.666
20 260146_at AT1G52770 [Phototropic-responsive NPH3 family protein] 0.415 -3.664
21 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.402 0.423
22 263495_at AT2G42530 COR15B, cold regulated 15b 0.393 1.316
23 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.389 -1.110
24 247360_at AT5G63450 CYP94B1, cytochrome P450, family 94, subfamily B, polypeptide 1 0.386 2.789
25 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 3.525
26 262211_at AT1G74930 ORA47 0.382 2.745
27 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.371 1.647
28 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.369 4.543
29 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 0.364 -0.967
30 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.353 -1.532
31 266516_at AT2G47880 [Glutaredoxin family protein] 0.351 -3.235
32 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.347 -4.059
33 247956_at AT5G56970 ATCKX3, CKX3, cytokinin oxidase 3 0.339 1.714
34 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.327 3.223
35 250632_at AT5G07450 CYCP4;3, cyclin p4;3 0.326 -0.049
36 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.319 -0.049
37 248509_at AT5G50335 unknown 0.317 -1.135
38 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.308 -3.255
39 265620_at AT2G27310 [F-box family protein] 0.289 1.013
40 252671_at AT3G44190 [FAD/NAD(P)-binding oxidoreductase family protein] 0.288 0.117
41 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.287 -0.049
42 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.287 -0.222
43 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.278 3.015
44 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.275 -0.049
45 246683_at AT5G33300 [chromosome-associated kinesin-related] 0.275 -0.934
46 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.273 7.124
47 262972_at AT1G75620 [glyoxal oxidase-related protein] 0.269 -2.459
48 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.261 -1.608
49 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.260 -0.049
50 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.257 -1.567
51 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.249 3.216
52 249174_at AT5G42900 COR27, cold regulated gene 27 0.248 4.066
53 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.246 -7.050
54 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.240 -1.460
55 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.238 1.057
56 245710_at AT5G04330 CYP84A4, CYTOCHROME P450 84A4 0.236 0.174
57 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY 0.231 -0.072
58 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.231 6.109
59 266425_at AT2G41300 SSL1, strictosidine synthase-like 1 0.229 -2.646
60 259015_at AT3G07350 unknown 0.224 2.585
61 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.222 -0.580
62 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.221 -1.804
63 246779_at AT5G27520 AtPNC2, PNC2, peroxisomal adenine nucleotide carrier 2 0.218 2.592
64 258796_at AT3G04630 WDL1, WVD2-like 1 0.218 -2.754
65 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 0.217 1.161
66 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -1.031 -4.992
67 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.792 -3.777
68 257057_at AT3G15310 unknown -0.641 -8.190
69 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.634 -6.950
70 252661_at AT3G44450 unknown -0.615 -6.572
71 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.601 -6.841
72 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.584 -5.207
73 254145_at AT4G24700 unknown -0.568 -3.947
74 250478_at AT5G10250 DOT3, DEFECTIVELY ORGANIZED TRIBUTARIES 3 -0.551 -7.625
75 256096_at AT1G13650 unknown -0.543 -7.060
76 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.489 -8.184
77 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.465 -1.538
78 263115_at AT1G03055 AtD27, A. thaliana homolog of rice D27, D27, DWARF27 -0.459 -6.542
79 261350_at AT1G79770 unknown -0.433 -4.878
80 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 -0.417 -2.259
81 248080_at AT5G55380 [MBOAT (membrane bound O-acyl transferase) family protein] -0.413 -1.579
82 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.409 -6.609
83 264636_at AT1G65490 unknown -0.406 -6.006
84 256619_at AT3G24460 [Serinc-domain containing serine and sphingolipid biosynthesis protein] -0.395 -2.232
85 255763_at AT1G16730 unknown -0.392 -2.719
86 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.392 -0.049
87 262875_at AT1G64970 G-TMT, gamma-tocopherol methyltransferase, TMT1, VTE4, VITAMIN E DEFICIENT 4 -0.356 0.088
88 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.346 0.125
89 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.345 -2.628
90 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.338 -4.500
91 258315_at AT3G16175 [Thioesterase superfamily protein] -0.336 -2.845
92 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 -0.332 -0.049
93 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 -0.330 -5.558
94 263632_at AT2G04795 unknown -0.329 -2.576
95 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.328 0.946
96 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.327 -3.127
97 251727_at AT3G56290 unknown -0.327 -5.508
98 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 -0.321 -0.988
99 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.318 -2.157
100 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.309 -2.559
101 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.307 -3.355
102 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.306 -1.173
103 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.303 -5.390
104 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.303 7.974
105 245460_at AT4G16990 RLM3, RESISTANCE TO LEPTOSPHAERIA MACULANS 3 -0.297 0.439
106 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.293 -6.520
107 252989_at AT4G38420 sks9, SKU5 similar 9 -0.283 -3.141
108 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.282 4.859
109 248846_at AT5G46500 unknown -0.280 -0.355
110 266895_at AT2G26040 PYL2, PYR1-like 2, RCAR14, regulatory components of ABA receptor 14 -0.278 -3.640
111 259133_at AT3G05400 [Major facilitator superfamily protein] -0.274 -1.331
112 256336_at AT1G72030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.273 -1.973
113 265296_at AT2G14060 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.271 -0.580
114 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -0.270 -5.106
115 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.264 1.233
116 264822_at AT1G03457 AtBRN2, BRN2, Bruno-like 2 -0.262 -1.071
117 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.256 6.039
118 267063_at AT2G41120 unknown -0.256 -3.692
119 264738_at AT1G62250 unknown -0.256 -1.898
120 253425_at AT4G32190 [Myosin heavy chain-related protein] -0.255 -1.662
121 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] -0.254 -1.875
122 247486_at AT5G62140 unknown -0.250 -0.949
123 262028_at AT1G35560 AtTCP23, TCP23, TCP domain protein 23 -0.250 -3.391
124 262549_at AT1G31290 AGO3, ARGONAUTE 3 -0.246 0.693
125 256275_at AT3G12110 ACT11, actin-11 -0.245 -2.805
126 254587_at AT4G19520 [disease resistance protein (TIR-NBS-LRR class) family] -0.237 2.403
127 265959_at AT2G37240 [Thioredoxin superfamily protein] -0.235 -4.352
128 255304_at AT4G04850 ATKEA3, KEA3, K+ efflux antiporter 3 -0.233 -2.427
129 245095_at AT2G40860 [protein kinase family protein / protein phosphatase 2C ( PP2C) family protein] -0.232 -1.459