4.0:Information of module
Wt-BA-sample
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 8.014e-08
GO:0009725 response to hormone BP 1.640e-07
GO:0009755 hormone-mediated signaling pathway BP 3.479e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 8.737e-14
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 8.737e-14
GO:0046173 polyol biosynthetic process BP 1.049e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Wt-BA-sample		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.838 0.345
2 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.753 -0.610
3 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.750 0.227
4 262915_at AT1G59940 ARR3, response regulator 3 0.672 -0.152
5 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.672 0.121
6 264404_at AT2G25160 CYP82F1, cytochrome P450, family 82, subfamily F, polypeptide 1 0.631 -0.958
7 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.549 0.282
8 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.538 -0.083
9 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.537 -0.131
10 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.531 -0.663
11 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.518 -0.073
12 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.503 0.063
13 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.490 -0.773
14 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 0.482 -1.236
15 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 0.442 -0.511
16 257271_at AT3G28007 AtSWEET4, SWEET4 0.428 -1.288
17 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 0.425 0.026
18 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.422 0.178
19 245353_at AT4G16000 unknown 0.416 -0.968
20 260146_at AT1G52770 [Phototropic-responsive NPH3 family protein] 0.415 0.034
21 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.402 -1.038
22 263495_at AT2G42530 COR15B, cold regulated 15b 0.393 -0.025
23 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.389 0.664
24 247360_at AT5G63450 CYP94B1, cytochrome P450, family 94, subfamily B, polypeptide 1 0.386 -0.607
25 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 0.972
26 262211_at AT1G74930 ORA47 0.382 -0.480
27 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.371 0.223
28 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.369 -0.320
29 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 0.364 0.307
30 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.353 -0.310
31 266516_at AT2G47880 [Glutaredoxin family protein] 0.351 0.348
32 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.347 0.134
33 247956_at AT5G56970 ATCKX3, CKX3, cytokinin oxidase 3 0.339 -0.445
34 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.327 -0.139
35 250632_at AT5G07450 CYCP4;3, cyclin p4;3 0.326 -1.051
36 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.319 -0.065
37 248509_at AT5G50335 unknown 0.317 -0.376
38 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.308 -0.536
39 265620_at AT2G27310 [F-box family protein] 0.289 -0.170
40 252671_at AT3G44190 [FAD/NAD(P)-binding oxidoreductase family protein] 0.288 1.052
41 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.287 -1.086
42 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.287 -0.462
43 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.278 0.072
44 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.275 -0.800
45 246683_at AT5G33300 [chromosome-associated kinesin-related] 0.275 0.659
46 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.273 -0.657
47 262972_at AT1G75620 [glyoxal oxidase-related protein] 0.269 -0.474
48 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.261 -1.044
49 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.260 -0.781
50 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.257 0.042
51 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.249 -0.528
52 249174_at AT5G42900 COR27, cold regulated gene 27 0.248 -0.471
53 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.246 -0.201
54 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.240 -1.015
55 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.238 0.343
56 245710_at AT5G04330 CYP84A4, CYTOCHROME P450 84A4 0.236 -0.389
57 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY 0.231 -0.148
58 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.231 -0.280
59 266425_at AT2G41300 SSL1, strictosidine synthase-like 1 0.229 -0.556
60 259015_at AT3G07350 unknown 0.224 -0.384
61 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.222 -0.639
62 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.221 0.068
63 246779_at AT5G27520 AtPNC2, PNC2, peroxisomal adenine nucleotide carrier 2 0.218 0.381
64 258796_at AT3G04630 WDL1, WVD2-like 1 0.218 0.714
65 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 0.217 -0.169
66 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -1.031 0.767
67 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.792 -1.037
68 257057_at AT3G15310 unknown -0.641 -0.059
69 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.634 0.539
70 252661_at AT3G44450 unknown -0.615 1.058
71 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.601 0.099
72 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.584 -0.318
73 254145_at AT4G24700 unknown -0.568 0.526
74 250478_at AT5G10250 DOT3, DEFECTIVELY ORGANIZED TRIBUTARIES 3 -0.551 -1.034
75 256096_at AT1G13650 unknown -0.543 -0.628
76 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.489 0.495
77 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.465 0.031
78 263115_at AT1G03055 AtD27, A. thaliana homolog of rice D27, D27, DWARF27 -0.459 0.046
79 261350_at AT1G79770 unknown -0.433 -0.811
80 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 -0.417 -0.967
81 248080_at AT5G55380 [MBOAT (membrane bound O-acyl transferase) family protein] -0.413 -0.227
82 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.409 -1.152
83 264636_at AT1G65490 unknown -0.406 -0.749
84 256619_at AT3G24460 [Serinc-domain containing serine and sphingolipid biosynthesis protein] -0.395 0.064
85 255763_at AT1G16730 unknown -0.392 -0.561
86 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.392 0.144
87 262875_at AT1G64970 G-TMT, gamma-tocopherol methyltransferase, TMT1, VTE4, VITAMIN E DEFICIENT 4 -0.356 0.942
88 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.346 -0.935
89 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.345 -0.005
90 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.338 0.111
91 258315_at AT3G16175 [Thioesterase superfamily protein] -0.336 0.348
92 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 -0.332 -0.897
93 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 -0.330 0.575
94 263632_at AT2G04795 unknown -0.329 0.085
95 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.328 -0.200
96 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.327 -0.415
97 251727_at AT3G56290 unknown -0.327 0.304
98 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 -0.321 0.884
99 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.318 0.696
100 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.309 -0.050
101 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.307 -0.277
102 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.306 -0.232
103 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.303 0.022
104 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.303 1.118
105 245460_at AT4G16990 RLM3, RESISTANCE TO LEPTOSPHAERIA MACULANS 3 -0.297 -0.284
106 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.293 0.674
107 252989_at AT4G38420 sks9, SKU5 similar 9 -0.283 0.710
108 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.282 -0.980
109 248846_at AT5G46500 unknown -0.280 -0.581
110 266895_at AT2G26040 PYL2, PYR1-like 2, RCAR14, regulatory components of ABA receptor 14 -0.278 -0.030
111 259133_at AT3G05400 [Major facilitator superfamily protein] -0.274 0.242
112 256336_at AT1G72030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.273 0.785
113 265296_at AT2G14060 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.271 -0.245
114 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -0.270 0.201
115 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.264 -0.791
116 264822_at AT1G03457 AtBRN2, BRN2, Bruno-like 2 -0.262 0.537
117 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.256 0.171
118 267063_at AT2G41120 unknown -0.256 -0.400
119 264738_at AT1G62250 unknown -0.256 -0.560
120 253425_at AT4G32190 [Myosin heavy chain-related protein] -0.255 -0.819
121 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] -0.254 0.425
122 247486_at AT5G62140 unknown -0.250 -0.020
123 262028_at AT1G35560 AtTCP23, TCP23, TCP domain protein 23 -0.250 -0.404
124 262549_at AT1G31290 AGO3, ARGONAUTE 3 -0.246 0.024
125 256275_at AT3G12110 ACT11, actin-11 -0.245 0.535
126 254587_at AT4G19520 [disease resistance protein (TIR-NBS-LRR class) family] -0.237 -0.852
127 265959_at AT2G37240 [Thioredoxin superfamily protein] -0.235 0.850
128 255304_at AT4G04850 ATKEA3, KEA3, K+ efflux antiporter 3 -0.233 -0.223
129 245095_at AT2G40860 [protein kinase family protein / protein phosphatase 2C ( PP2C) family protein] -0.232 -0.760