4.0:Information of module
Wt-BA-sample
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 8.014e-08
GO:0009725 response to hormone BP 1.640e-07
GO:0009755 hormone-mediated signaling pathway BP 3.479e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 8.737e-14
GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 8.737e-14
GO:0046173 polyol biosynthetic process BP 1.049e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Wt-BA-sample		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.838 -0.034
2 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.753 -0.020
3 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.750 0.783
4 262915_at AT1G59940 ARR3, response regulator 3 0.672 -0.049
5 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.672 0.493
6 264404_at AT2G25160 CYP82F1, cytochrome P450, family 82, subfamily F, polypeptide 1 0.631 -0.044
7 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.549 -0.170
8 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.538 -0.028
9 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.537 -0.034
10 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.531 0.624
11 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.518 -0.010
12 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.503 -0.089
13 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.490 -0.048
14 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 0.482 -0.008
15 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 0.442 -0.121
16 257271_at AT3G28007 AtSWEET4, SWEET4 0.428 -0.010
17 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 0.425 0.351
18 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.422 -0.059
19 245353_at AT4G16000 unknown 0.416 0.006
20 260146_at AT1G52770 [Phototropic-responsive NPH3 family protein] 0.415 0.002
21 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.402 0.616
22 263495_at AT2G42530 COR15B, cold regulated 15b 0.393 -0.061
23 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.389 0.057
24 247360_at AT5G63450 CYP94B1, cytochrome P450, family 94, subfamily B, polypeptide 1 0.386 -0.037
25 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 -0.071
26 262211_at AT1G74930 ORA47 0.382 -0.075
27 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.371 -0.120
28 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.369 0.073
29 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 0.364 0.046
30 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.353 -0.022
31 266516_at AT2G47880 [Glutaredoxin family protein] 0.351 -0.076
32 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.347 0.064
33 247956_at AT5G56970 ATCKX3, CKX3, cytokinin oxidase 3 0.339 -0.080
34 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.327 0.035
35 250632_at AT5G07450 CYCP4;3, cyclin p4;3 0.326 0.002
36 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.319 -0.064
37 248509_at AT5G50335 unknown 0.317 -0.161
38 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.308 0.122
39 265620_at AT2G27310 [F-box family protein] 0.289 -0.049
40 252671_at AT3G44190 [FAD/NAD(P)-binding oxidoreductase family protein] 0.288 0.098
41 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.287 -0.027
42 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.287 0.287
43 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.278 0.014
44 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.275 0.006
45 246683_at AT5G33300 [chromosome-associated kinesin-related] 0.275 0.004
46 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.273 -0.038
47 262972_at AT1G75620 [glyoxal oxidase-related protein] 0.269 -0.010
48 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.261 0.033
49 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.260 0.019
50 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.257 -0.025
51 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.249 0.285
52 249174_at AT5G42900 COR27, cold regulated gene 27 0.248 -0.075
53 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.246 0.067
54 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.240 0.026
55 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.238 0.661
56 245710_at AT5G04330 CYP84A4, CYTOCHROME P450 84A4 0.236 -0.090
57 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY 0.231 -0.047
58 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.231 -0.051
59 266425_at AT2G41300 SSL1, strictosidine synthase-like 1 0.229 -0.037
60 259015_at AT3G07350 unknown 0.224 0.002
61 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.222 -0.044
62 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.221 0.130
63 246779_at AT5G27520 AtPNC2, PNC2, peroxisomal adenine nucleotide carrier 2 0.218 -0.009
64 258796_at AT3G04630 WDL1, WVD2-like 1 0.218 0.001
65 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 0.217 -0.014
66 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -1.031 -0.107
67 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.792 0.086
68 257057_at AT3G15310 unknown -0.641 -0.087
69 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.634 0.118
70 252661_at AT3G44450 unknown -0.615 -0.045
71 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.601 0.108
72 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.584 -0.085
73 254145_at AT4G24700 unknown -0.568 -0.096
74 250478_at AT5G10250 DOT3, DEFECTIVELY ORGANIZED TRIBUTARIES 3 -0.551 -0.061
75 256096_at AT1G13650 unknown -0.543 -0.116
76 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.489 -0.009
77 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] -0.465 0.029
78 263115_at AT1G03055 AtD27, A. thaliana homolog of rice D27, D27, DWARF27 -0.459 0.003
79 261350_at AT1G79770 unknown -0.433 -0.063
80 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 -0.417 0.072
81 248080_at AT5G55380 [MBOAT (membrane bound O-acyl transferase) family protein] -0.413 -0.049
82 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.409 -0.055
83 264636_at AT1G65490 unknown -0.406 -0.041
84 256619_at AT3G24460 [Serinc-domain containing serine and sphingolipid biosynthesis protein] -0.395 0.020
85 255763_at AT1G16730 unknown -0.392 -0.043
86 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.392 0.029
87 262875_at AT1G64970 G-TMT, gamma-tocopherol methyltransferase, TMT1, VTE4, VITAMIN E DEFICIENT 4 -0.356 -0.017
88 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.346 -0.053
89 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.345 0.019
90 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.338 0.149
91 258315_at AT3G16175 [Thioesterase superfamily protein] -0.336 0.067
92 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 -0.332 -0.008
93 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 -0.330 0.081
94 263632_at AT2G04795 unknown -0.329 -0.017
95 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.328 0.033
96 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.327 -0.072
97 251727_at AT3G56290 unknown -0.327 0.022
98 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 -0.321 0.028
99 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.318 -0.058
100 264083_at AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -0.309 -0.118
101 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.307 -0.020
102 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.306 0.006
103 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.303 -0.065
104 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.303 -0.012
105 245460_at AT4G16990 RLM3, RESISTANCE TO LEPTOSPHAERIA MACULANS 3 -0.297 0.221
106 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.293 -0.019
107 252989_at AT4G38420 sks9, SKU5 similar 9 -0.283 0.034
108 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.282 -0.026
109 248846_at AT5G46500 unknown -0.280 -0.022
110 266895_at AT2G26040 PYL2, PYR1-like 2, RCAR14, regulatory components of ABA receptor 14 -0.278 -0.056
111 259133_at AT3G05400 [Major facilitator superfamily protein] -0.274 0.061
112 256336_at AT1G72030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.273 -0.111
113 265296_at AT2G14060 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.271 -0.005
114 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -0.270 0.086
115 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.264 -0.003
116 264822_at AT1G03457 AtBRN2, BRN2, Bruno-like 2 -0.262 -0.019
117 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.256 0.053
118 267063_at AT2G41120 unknown -0.256 0.014
119 264738_at AT1G62250 unknown -0.256 -0.069
120 253425_at AT4G32190 [Myosin heavy chain-related protein] -0.255 0.128
121 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] -0.254 0.024
122 247486_at AT5G62140 unknown -0.250 -0.124
123 262028_at AT1G35560 AtTCP23, TCP23, TCP domain protein 23 -0.250 -0.137
124 262549_at AT1G31290 AGO3, ARGONAUTE 3 -0.246 -0.055
125 256275_at AT3G12110 ACT11, actin-11 -0.245 -0.025
126 254587_at AT4G19520 [disease resistance protein (TIR-NBS-LRR class) family] -0.237 -0.019
127 265959_at AT2G37240 [Thioredoxin superfamily protein] -0.235 0.002
128 255304_at AT4G04850 ATKEA3, KEA3, K+ efflux antiporter 3 -0.233 0.002
129 245095_at AT2G40860 [protein kinase family protein / protein phosphatase 2C ( PP2C) family protein] -0.232 -0.043