4.0:Information of module
cdm1 mutant floral young floral buds
In comparison with Red/FR Light45min help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:2001057 reactive nitrogen species metabolic proc... BP 9.279e-05
GO:0009611 response to wounding BP 1.101e-03
GO:0010393 galacturonan metabolic process BP 2.003e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019321 pentose metabolic process BP 4.474e-03
GO:0032940 secretion by cell BP 1.445e-02
GO:0046903 secretion BP 1.445e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cdm1 mutant floral young floral buds		 Log2 signal ratio
Red/FR Light45min
1 264648_at AT1G09080 BIP3, binding protein 3 0.588 -0.008
2 254111_at AT4G24890 ATPAP24, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, PAP24, purple acid phosphatase 24 0.513 -0.089
3 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.392 -0.002
4 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.390 -0.011
5 251498_at AT3G59070 [Cytochrome b561/ferric reductase transmembrane with DOMON related domain] 0.353 0.006
6 248651_at AT5G49260 unknown 0.338 -0.038
7 257578_x_at AT3G30160 unknown 0.314 -0.006
8 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 0.303 0.010
9 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.294 -0.007
10 248241_at AT5G53960 [ATP binding] 0.286 0.010
11 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.284 0.303
12 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.283 0.047
13 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.260 0.007
14 253839_at AT4G27890 [HSP20-like chaperones superfamily protein] 0.259 -0.030
15 252161_at AT3G50580 [LOCATED IN: endomembrane system] 0.242 -0.023
16 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 0.241 -0.061
17 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 0.233 0.020
18 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 0.232 0.015
19 261586_at AT1G01640 [BTB/POZ domain-containing protein] 0.227 0.019
20 254212_at AT4G23580 [Galactose oxidase/kelch repeat superfamily protein] 0.222 -0.019
21 250677_at AT5G06520 [SWAP (Suppressor-of-White-APricot)/surp domain-containing protein] 0.219 -0.021
22 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.214 0.015
23 247739_at AT5G59240 [Ribosomal protein S8e family protein] 0.212 0.038
24 256108_at AT1G16940 [F-box/RNI-like/FBD-like domains-containing protein] 0.211 -0.072
25 245058_at AT2G39790 [Mitochondrial glycoprotein family protein] 0.209 -0.010
26 260883_at AT1G29270 unknown 0.202 0.004
27 265186_at AT1G23560 unknown 0.198 0.030
28 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.196 -0.050
29 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.192 0.021
30 253653_at AT4G30050 unknown 0.191 -0.016
31 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 0.182 -0.011
32 247189_at AT5G65390 AGP7, arabinogalactan protein 7 0.180 0.003
33 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.179 -0.024
34 264348_at AT1G12110 AtNPF6.3, ATNRT1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, B-1, CHL1, CHLORINA 1, CHL1-1, NPF6.3, NRT1/ PTR family 6.3, NRT1, NITRATE TRANSPORTER 1, NRT1.1, nitrate transporter 1.1 0.175 0.001
35 254158_at AT4G24380 [INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process] 0.173 0.004
36 265460_at AT2G46600 [Calcium-binding EF-hand family protein] 0.172 0.021
37 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.172 -0.002
38 252283_at AT3G48960 [Ribosomal protein L13e family protein] 0.171 -0.004
39 254000_at AT4G26250 AtGolS6, galactinol synthase 6, GolS6, galactinol synthase 6 0.170 -0.031
40 256275_at AT3G12110 ACT11, actin-11 0.166 -0.012
41 252615_at AT3G45230 APAP1, ARABINOXYLAN PECTIN ARABINOGALACTAN PROTEIN 1 0.165 -0.028
42 251861_at AT3G54810 BME3, BLUE MICROPYLAR END 3, BME3-ZF, BLUE MICROPYLAR END 3-ZINC FINGER, GATA8, GATA TRANSCRIPTION FACTOR 8 0.164 -0.025
43 259433_at AT1G01570 [FUNCTIONS IN: transferase activity, transferring glycosyl groups] 0.162 -0.001
44 258117_at AT3G14700 [SART-1 family] 0.159 0.017
45 249346_at AT5G40780 LHT1, lysine histidine transporter 1 0.158 -0.024
46 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 0.157 -0.007
47 266787_at AT2G28990 [Leucine-rich repeat protein kinase family protein] 0.155 0.014
48 266667_at AT2G29770 [Galactose oxidase/kelch repeat superfamily protein] -0.590 -0.031
49 248215_at AT5G53680 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.494 -0.014
50 258667_at AT3G08750 [F-box and associated interaction domains-containing protein] -0.476 0.008
51 249338_at AT5G41090 anac095, NAC domain containing protein 95, NAC095, NAC domain containing protein 95 -0.462 0.010
52 254435_at AT4G20900 MS5, MALE-STERILE 5, TDM1 -0.460 -0.020
53 254946_at AT4G10950 [SGNH hydrolase-type esterase superfamily protein] -0.453 -0.050
54 255416_at AT4G03170 [AP2/B3-like transcriptional factor family protein] -0.453 0.001
55 265323_at AT2G18260 ATSYP112, SYP112, syntaxin of plants 112 -0.440 -0.009
56 249041_at AT5G44330 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.439 -0.014
57 247561_at AT5G61110 [zinc ion binding] -0.423 0.003
58 266677_at AT2G29820 [Galactose oxidase/kelch repeat superfamily protein] -0.401 -0.034
59 246556_at AT5G15480 [C2H2-type zinc finger family protein] -0.400 0.008
60 251651_at AT3G57370 [Cyclin family protein] -0.398 0.016
61 262213_at AT1G74870 [RING/U-box superfamily protein] -0.394 -0.013
62 255289_at AT4G04690 [F-box and associated interaction domains-containing protein] -0.393 -0.040
63 252221_at AT3G49830 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.389 -0.016
64 255275_at AT4G05310 [Ubiquitin-like superfamily protein] -0.383 0.012
65 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 -0.383 -0.034
66 251441_at AT3G60020 ASK5, SKP1-like 5, SK5, SKP1-like 5 -0.370 -0.026
67 265168_at AT1G23700 [Protein kinase superfamily protein] -0.369 -0.056
68 257451_at AT1G05690 BT3, BTB and TAZ domain protein 3 -0.363 -0.038
69 250036_at AT5G18340 [ARM repeat superfamily protein] -0.350 0.073
70 266666_at AT2G29780 [Galactose oxidase/kelch repeat superfamily protein] -0.340 0.004
71 248702_at AT5G48420 unknown -0.322 0.045
72 251339_at AT3G60780 unknown -0.313 -0.024
73 256975_at AT3G21000 [Gag-Pol-related retrotransposon family protein] -0.309 0.013
74 247661_at AT5G60080 [Protein kinase superfamily protein] -0.299 -0.006
75 255086_at AT4G09300 [LisH and RanBPM domains containing protein] -0.296 -0.006
76 266390_at AT2G32310 [CCT motif family protein] -0.291 0.009
77 264269_at AT1G60240 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] -0.291 0.003
78 257693_at AT3G12850 [COP9 signalosome complex-related / CSN complex-related] -0.290 -0.000
79 259904_at AT1G74150 [Galactose oxidase/kelch repeat superfamily protein] -0.285 0.017
80 267598_at AT2G33010 [Ubiquitin-associated (UBA) protein] -0.282 -0.038
81 248600_at AT5G49390 [LOCATED IN: endomembrane system] -0.271 -0.021
82 267039_at AT2G34270 unknown -0.267 -0.038
83 254287_at AT4G22960 unknown -0.263 -0.072
84 261890_at AT1G80970 [XH domain-containing protein] -0.252 0.028
85 255339_at AT4G04480 unknown -0.247 -0.001
86 255426_at AT4G03370 [Ubiquitin family protein] -0.244 0.005
87 254135_at AT4G24860 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.236 0.000
88 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.235 0.022
89 256616_at AT3G22260 [Cysteine proteinases superfamily protein] -0.232 -0.001
90 259033_at AT3G09405 [Pectinacetylesterase family protein] -0.232 0.011
91 258424_at AT3G16750 unknown -0.232 -0.045
92 262353_at AT1G64210 [Leucine-rich repeat protein kinase family protein] -0.226 -0.023
93 252873_at AT4G40020 [Myosin heavy chain-related protein] -0.218 -0.011