4.0:Information of module
Te CA
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016556 mRNA modification BP 1.925e-04
GO:0007276 gamete generation BP 4.644e-04
GO:0009451 RNA modification BP 1.047e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.162e-11
GO:0098542 defense response to other organism BP 1.440e-08
GO:0009814 defense response, incompatible interacti... BP 1.307e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Te CA		 Log2 signal ratio
bri1-116
1 265889_at AT2G15130 [Plant basic secretory protein (BSP) family protein] 1.587 0.024
2 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.927 0.065
3 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.859 -0.183
4 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.756 0.128
5 246683_at AT5G33300 [chromosome-associated kinesin-related] 0.730 0.072
6 246406_at AT1G57650 [ATP binding] 0.644 0.042
7 262421_at AT1G50290 unknown 0.635 0.034
8 256859_at AT3G22940 [F-box associated ubiquitination effector family protein] 0.609 0.018
9 265147_at AT1G51380 [DEA(D/H)-box RNA helicase family protein] 0.572 -0.026
10 257417_at AT1G10110 [F-box family protein] 0.569 0.050
11 248734_at AT5G48090 ELP1, EDM2-like protein1 0.545 -0.058
12 247797_at AT5G58780 AtcPT5, AtHEPS, cPT5, cis -prenyltransferase 5, HEPS, heptaprenyl diphosphate synthase 0.544 0.041
13 262321_at AT1G27570 [phosphatidylinositol 3- and 4-kinase family protein] 0.517 0.048
14 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 0.504 0.011
15 256175_at AT1G51670 unknown 0.494 0.030
16 261302_at AT1G48580 unknown 0.492 0.078
17 251344_at AT3G60920 unknown 0.485 0.046
18 252345_at AT3G48640 unknown 0.483 0.058
19 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.482 -0.083
20 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.474 0.183
21 255653_at AT4G00960 [Protein kinase superfamily protein] 0.468 0.008
22 256852_at AT3G18610 ATNUC-L2, nucleolin like 2, NUC-L2, nucleolin like 2, PARLL1, PARALLEL1-LIKE 1 0.466 -0.072
23 249601_at AT5G37980 [Zinc-binding dehydrogenase family protein] 0.448 -0.080
24 249955_at AT5G18840 [Major facilitator superfamily protein] 0.445 0.100
25 246344_at AT3G56730 [Putative endonuclease or glycosyl hydrolase] 0.443 -0.084
26 261665_at AT1G18310 [glycosyl hydrolase family 81 protein] 0.439 0.034
27 248695_at AT5G48350 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.436 0.051
28 260396_at AT1G69720 HO3, heme oxygenase 3 0.432 0.144
29 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.407 0.070
30 244901_at ATMG00640 ORF25 0.406 0.118
31 250938_at AT5G03180 [RING/U-box superfamily protein] 0.393 0.186
32 254350_at AT4G22280 [F-box/RNI-like superfamily protein] 0.391 0.045
33 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.387 0.126
34 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.387 -0.016
35 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.381 0.024
36 248975_at AT5G45040 CYTC6A, cytochrome c6A 0.378 0.215
37 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 0.370 0.118
38 250136_at AT5G15380 DRM1, domains rearranged methylase 1 0.360 0.039
39 266355_at AT2G01400 unknown 0.357 0.043
40 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.354 0.778
41 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.351 0.022
42 249948_at AT5G19210 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.345 0.228
43 244932_at ATCG01060 PSAC 0.344 -0.043
44 261001_at AT1G26530 [PIN domain-like family protein] 0.344 0.096
45 249397_at AT5G40230 UMAMIT37, Usually multiple acids move in and out Transporters 37 0.343 0.038
46 261931_at AT1G22430 [GroES-like zinc-binding dehydrogenase family protein] 0.328 0.131
47 246733_at AT5G27660 DEG14, degradation of periplasmic proteins 14 0.328 0.051
48 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] 0.321 0.135
49 245215_at AT1G67830 ATFXG1, Arabidopsis thaliana alpha-fucosidase 1, FXG1, alpha-fucosidase 1 0.318 0.183
50 251345_at AT3G60940 [Putative endonuclease or glycosyl hydrolase] 0.308 0.296
51 246590_at AT5G14870 ATCNGC18, CYCLIC NUCLEOTIDE-GATED CHANNEL 18, CNGC18, cyclic nucleotide-gated channel 18 0.306 -0.002
52 245743_at AT1G51080 unknown 0.305 0.011
53 249802_at AT5G23770 unknown 0.304 0.096
54 257149_at AT3G27280 ATPHB4, prohibitin 4, PHB4, prohibitin 4 0.302 0.034
55 249107_at AT5G43680 unknown 0.302 -0.012
56 246757_at AT5G27940 WPP3, WPP domain protein 3 0.301 -0.010
57 262665_at AT1G14070 FUT7, fucosyltransferase 7 0.297 -0.006
58 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] 0.295 0.001
59 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.294 -0.063
60 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.294 0.033
61 249553_at AT5G38260 [Protein kinase superfamily protein] 0.294 -0.086
62 252502_at AT3G46900 COPT2, copper transporter 2 0.293 -0.017
63 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 0.290 0.164
64 257158_at AT3G24360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.288 -0.037
65 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L 0.287 -0.042
66 263433_at AT2G22240 ATIPS2, INOSITOL 3-PHOSPHATE SYNTHASE 2, ATMIPS2, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, MIPS2, myo-inositol-1-phosphate synthase 2 0.272 -0.004
67 249147_at AT5G43330 c-NAD-MDH2, cytosolic-NAD-dependent malate dehydrogenase 2 0.266 0.051
68 247250_at AT5G64630 FAS2, FASCIATA 2, MUB3.9, NFB01, NFB1 0.266 0.039
69 262737_at AT1G28560 SRD2, SHOOT REDIFFERENTIATION DEFECTIVE 2 0.266 0.145
70 261277_at AT1G20230 [Pentatricopeptide repeat (PPR) superfamily protein] 0.259 0.168
71 260100_at AT1G73177 APC13, anaphase-promoting complex 13, BNS, BONSAI 0.256 0.179
72 246316_at AT3G56890 [F-box associated ubiquitination effector family protein] 0.254 0.060
73 255760_at AT1G16780 AtVHP2;2, VHP2;2 0.252 0.147
74 246168_at AT5G32460 [Transcriptional factor B3 family protein] 0.250 0.149
75 254938_at AT4G10770 ATOPT7, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, OPT7, oligopeptide transporter 7 0.250 -0.119
76 249726_at AT5G35480 unknown 0.247 0.094
77 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 0.245 0.084
78 251823_at AT3G55080 [SET domain-containing protein] 0.245 0.320
79 254274_at AT4G22770 AHL2, AT-hook motif nuclear localized protein 2 0.244 -0.078
80 252946_at AT4G39235 unknown 0.243 0.208
81 253513_at AT4G31760 [Peroxidase superfamily protein] 0.239 0.046
82 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.237 0.277
83 259539_at AT1G20550 [O-fucosyltransferase family protein] 0.234 0.064
84 262284_at AT1G68670 [myb-like transcription factor family protein] 0.234 -0.001
85 264167_at AT1G02060 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.234 -0.017
86 264068_at AT2G27990 BLH8, BEL1-like homeodomain 8, PNF, POUND-FOOLISH 0.233 0.126
87 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.796 -0.032
88 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -1.494 0.702
89 252462_at AT3G47250 unknown -1.479 0.351
90 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 -1.450 0.080
91 264958_at AT1G76960 unknown -1.362 -0.215
92 256497_at AT1G31580 CXC750, ECS1 -1.347 -0.176
93 248944_at AT5G45500 [RNI-like superfamily protein] -1.222 -0.024
94 260312_at AT1G63880 [Disease resistance protein (TIR-NBS-LRR class) family] -1.048 0.218
95 267345_at AT2G44240 unknown -1.020 0.129
96 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] -1.007 0.145
97 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.957 -0.015
98 256527_at AT1G66100 [Plant thionin] -0.957 0.050
99 259560_at AT1G21270 WAK2, wall-associated kinase 2 -0.907 0.069
100 248934_at AT5G46080 [Protein kinase superfamily protein] -0.887 -0.264
101 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 -0.880 0.095
102 263023_at AT1G23960 unknown -0.869 0.053
103 267076_at AT2G41090 [Calcium-binding EF-hand family protein] -0.864 -0.025
104 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.835 -0.020
105 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.834 -0.375
106 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 -0.822 -0.003
107 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.799 -0.014
108 254870_at AT4G11900 [S-locus lectin protein kinase family protein] -0.796 0.052
109 252659_at AT3G44430 unknown -0.783 0.170
110 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.782 0.105
111 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] -0.777 0.079
112 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.764 -0.059
113 264929_at AT1G60730 [NAD(P)-linked oxidoreductase superfamily protein] -0.752 -0.184
114 259550_at AT1G35230 AGP5, arabinogalactan protein 5 -0.743 -0.074
115 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.722 0.025
116 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.722 0.028
117 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.718 0.014
118 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.716 0.082
119 257591_at AT3G24900 AtRLP39, receptor like protein 39, RLP39, receptor like protein 39 -0.710 0.017
120 249896_at AT5G22530 unknown -0.705 0.082
121 261021_at AT1G26380 [FAD-binding Berberine family protein] -0.697 -0.257
122 251633_at AT3G57460 [catalytics] -0.696 0.034
123 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.696 0.161
124 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.695 0.060
125 248333_at AT5G52390 [PAR1 protein] -0.693 0.038
126 245567_at AT4G14630 GLP9, germin-like protein 9 -0.692 -0.146
127 256617_at AT3G22240 unknown -0.688 -0.111
128 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 -0.653 -0.231
129 263007_at AT1G54260 [winged-helix DNA-binding transcription factor family protein] -0.653 0.012
130 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.648 0.137
131 252676_at AT3G44280 unknown -0.646 -0.045
132 262010_at AT1G35612 [expressed protein] -0.644 0.026
133 254735_at AT4G13810 AtRLP47, receptor like protein 47, RLP47, receptor like protein 47 -0.640 0.023
134 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.625 0.131
135 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.598 -0.239
136 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.596 0.014
137 264824_at AT1G03420 Sadhu4-2, sadhu non-coding retrotransposon 4-2 -0.590 0.036
138 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.582 0.102
139 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.574 0.074
140 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -0.571 -0.071
141 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -0.570 0.070
142 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.563 0.123
143 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.563 -0.138
144 255110_at AT4G08770 Prx37, peroxidase 37 -0.560 -0.282
145 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 -0.559 0.113
146 252485_at AT3G46530 RPP13, RECOGNITION OF PERONOSPORA PARASITICA 13 -0.558 0.213
147 263401_at AT2G04070 [MATE efflux family protein] -0.553 -0.083
148 264156_at AT1G65280 [DNAJ heat shock N-terminal domain-containing protein] -0.549 0.193
149 248079_at AT5G55790 unknown -0.540 0.154
150 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 -0.538 0.631
151 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] -0.529 -0.154
152 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.527 -0.023
153 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 -0.527 0.005
154 258027_at AT3G19515 unknown -0.522 -0.090
155 254585_at AT4G19500 [nucleoside-triphosphatases] -0.519 0.135
156 262304_at AT1G70890 MLP43, MLP-like protein 43 -0.518 -0.108
157 252309_at AT3G49340 [Cysteine proteinases superfamily protein] -0.516 0.032
158 254964_at AT4G11080 3xHMG-box1, 3xHigh Mobility Group-box1 -0.488 0.058
159 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 -0.477 -0.132
160 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.472 0.075
161 254594_at AT4G18930 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] -0.471 -0.108
162 247706_at AT5G59480 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.471 -0.034
163 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.469 0.554
164 245453_at AT4G16900 [Disease resistance protein (TIR-NBS-LRR class) family] -0.462 -0.033
165 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] -0.461 -0.195
166 248936_at AT5G45710 AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, RHA1, ROOT HANDEDNESS 1 -0.458 -0.143
167 256741_at AT3G29375 [XH domain-containing protein] -0.455 0.051
168 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -0.453 -0.393
169 255260_at AT4G05040 [ankyrin repeat family protein] -0.451 0.048
170 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.449 0.072
171 250740_at AT5G05760 ATSED5, ATSYP31, SED5, T-SNARE SED 5, SYP31, syntaxin of plants 31 -0.447 0.014