4.0:Information of module
Rsch CA
In comparison with sid2-1 cold help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009658 chloroplast organization BP 1.266e-07
GO:0046173 polyol biosynthetic process BP 6.994e-07
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 1.232e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.655e-08
GO:0009814 defense response, incompatible interacti... BP 1.144e-06
GO:0006950 response to stress BP 1.343e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Rsch CA		 Log2 signal ratio
sid2-1 cold
1 253707_at AT4G29200 [Beta-galactosidase related protein] 1.370 0.054
2 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY 0.986 0.340
3 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.959 -0.019
4 249259_at AT5G41660 unknown 0.945 -0.018
5 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.884 0.221
6 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 0.864 0.052
7 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.834 0.112
8 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.775 -0.049
9 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.762 0.217
10 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.743 0.024
11 250135_at AT5G15360 unknown 0.654 -0.033
12 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.644 -0.057
13 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.625 0.010
14 253689_at AT4G29770 unknown 0.604 -0.052
15 262421_at AT1G50290 unknown 0.576 0.036
16 246703_at AT5G28080 WNK9 0.551 0.015
17 248975_at AT5G45040 CYTC6A, cytochrome c6A 0.545 0.266
18 255371_at AT4G04110 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.544 0.018
19 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.501 0.126
20 254595_at AT4G18960 AG, AGAMOUS 0.489 -0.013
21 265147_at AT1G51380 [DEA(D/H)-box RNA helicase family protein] 0.481 0.108
22 266689_at AT2G19930 [RNA-dependent RNA polymerase family protein] 0.470 0.061
23 257670_at AT3G20340 unknown 0.462 -0.034
24 250036_at AT5G18340 [ARM repeat superfamily protein] 0.461 -0.054
25 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] 0.449 -0.008
26 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.448 0.032
27 265754_x_at AT2G10640 [CACTA-like transposase family (Ptta/En/Spm), has a 7.4e-42 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.444 -0.048
28 250506_at AT5G09930 ABCF2, ATP-binding cassette F2 0.435 -0.079
29 263674_at AT2G04790 unknown 0.432 0.106
30 246757_at AT5G27940 WPP3, WPP domain protein 3 0.431 0.016
31 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.423 -0.006
32 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.423 0.135
33 245215_at AT1G67830 ATFXG1, Arabidopsis thaliana alpha-fucosidase 1, FXG1, alpha-fucosidase 1 0.401 0.104
34 252744_at AT3G43310 [pseudogene] 0.400 -0.050
35 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.390 -0.282
36 260396_at AT1G69720 HO3, heme oxygenase 3 0.387 -0.350
37 256175_at AT1G51670 unknown 0.386 -0.015
38 250938_at AT5G03180 [RING/U-box superfamily protein] 0.379 0.097
39 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] 0.377 0.126
40 245227_s_at AT1G08410 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.366 0.129
41 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.357 -0.011
42 249948_at AT5G19210 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.356 0.150
43 246793_at AT5G27210 Cand8, candidate G-protein Coupled Receptor 8 0.350 0.005
44 259049_at AT3G03370 unknown 0.343 0.080
45 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.343 0.027
46 266355_at AT2G01400 unknown 0.342 0.081
47 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 0.337 0.037
48 253887_at AT4G27730 ATOPT6, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, OPT6, oligopeptide transporter 1 0.334 0.000
49 259503_at AT1G15870 [Mitochondrial glycoprotein family protein] 0.326 0.091
50 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 0.325 0.030
51 248425_at AT5G51690 ACS12, 1-amino-cyclopropane-1-carboxylate synthase 12 0.317 0.003
52 248969_at AT5G45310 unknown 0.316 0.078
53 254612_at AT4G19100 PAM68, photosynthesis affected mutant 68 0.315 0.058
54 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.311 0.158
55 254938_at AT4G10770 ATOPT7, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, OPT7, oligopeptide transporter 7 0.306 0.116
56 261931_at AT1G22430 [GroES-like zinc-binding dehydrogenase family protein] 0.305 0.141
57 252502_at AT3G46900 COPT2, copper transporter 2 0.302 -0.100
58 245446_at AT4G16800 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.301 0.120
59 263151_at AT1G54120 unknown 0.300 -0.017
60 258191_at AT3G29100 ATVTI13, VTI13, vesicle transport V-snare 13 0.296 0.039
61 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B 0.294 0.098
62 263115_at AT1G03055 AtD27, A. thaliana homolog of rice D27, D27, DWARF27 0.293 -0.035
63 264761_at AT1G61280 [Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit] 0.289 0.089
64 259728_at AT1G60970 [SNARE-like superfamily protein] 0.289 0.003
65 251591_at AT3G57680 [Peptidase S41 family protein] 0.283 0.136
66 252036_at AT3G52070 unknown 0.283 0.035
67 249995_at AT5G18610 [Protein kinase superfamily protein] 0.278 -0.103
68 257158_at AT3G24360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.278 0.030
69 260381_at AT1G73860 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.277 -0.056
70 262605_at AT1G15170 [MATE efflux family protein] 0.276 0.047
71 253585_at AT4G30720 PDE327, PIGMENT DEFECTIVE 327 0.276 0.082
72 250529_at AT5G08610 PDE340, PIGMENT DEFECTIVE 340 0.273 0.082
73 262510_at AT1G11270 [F-box and associated interaction domains-containing protein] 0.270 -0.015
74 254910_at AT4G11175 [Nucleic acid-binding, OB-fold-like protein] 0.270 -0.046
75 264055_at AT2G28590 [Protein kinase superfamily protein] 0.268 0.039
76 254529_at AT4G19540 INDH, iron-sulfur protein required for NADH dehydrogenase, INDL, IND1(iron-sulfur protein required for NADH dehydrogenase)-like 0.267 0.003
77 249955_at AT5G18840 [Major facilitator superfamily protein] 0.265 0.024
78 259881_at AT1G76820 [eukaryotic translation initiation factor 2 (eIF-2) family protein] 0.255 -0.048
79 249726_at AT5G35480 unknown 0.254 -0.044
80 267110_at AT2G14800 unknown 0.252 -0.091
81 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.251 -0.065
82 246733_at AT5G27660 DEG14, degradation of periplasmic proteins 14 0.246 -0.010
83 267554_at AT2G32790 [Ubiquitin-conjugating enzyme family protein] 0.245 -0.006
84 259030_at AT3G09310 unknown 0.242 0.021
85 265481_at AT2G15960 unknown 0.241 0.013
86 266402_at AT2G38780 unknown 0.240 0.053
87 264431_at AT1G61700 [RNA polymerases N / 8 kDa subunit] 0.239 -0.048
88 245047_at ATCG00020 PSBA, photosystem II reaction center protein A 0.238 -0.029
89 256748_x_at AT3G30396 [CACTA-like transposase family (Ptta/En/Spm), has a 3.1e-39 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.235 -0.101
90 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.234 0.034
91 252462_at AT3G47250 unknown -1.470 -0.058
92 265611_at AT2G25510 unknown -1.335 -0.057
93 253422_at AT4G32240 unknown -1.305 0.032
94 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] -1.277 -0.017
95 264958_at AT1G76960 unknown -1.239 -0.237
96 248944_at AT5G45500 [RNI-like superfamily protein] -1.199 -0.160
97 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -1.167 -0.154
98 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 -1.112 -0.816
99 265831_at AT2G14460 unknown -1.081 0.041
100 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -1.056 -0.565
101 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.030 -0.022
102 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.977 -0.076
103 267345_at AT2G44240 unknown -0.949 -0.433
104 260312_at AT1G63880 [Disease resistance protein (TIR-NBS-LRR class) family] -0.949 -0.037
105 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 -0.925 -0.199
106 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.922 -0.004
107 256527_at AT1G66100 [Plant thionin] -0.915 0.112
108 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 -0.902 -0.598
109 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.901 -0.437
110 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.863 -0.352
111 259559_at AT1G21240 WAK3, wall associated kinase 3 -0.853 -0.366
112 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.835 -0.535
113 252648_at AT3G44630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.819 -0.077
114 263023_at AT1G23960 unknown -0.815 -0.030
115 266376_at AT2G14620 XTH10, xyloglucan endotransglucosylase/hydrolase 10 -0.814 -0.420
116 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.813 -0.196
117 250942_at AT5G03350 [Legume lectin family protein] -0.803 -0.278
118 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.793 -0.022
119 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.783 -0.627
120 255627_at AT4G00955 unknown -0.782 -0.204
121 249320_at AT5G40910 [Disease resistance protein (TIR-NBS-LRR class) family] -0.782 0.084
122 252485_at AT3G46530 RPP13, RECOGNITION OF PERONOSPORA PARASITICA 13 -0.768 -0.023
123 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.765 -0.808
124 248321_at AT5G52740 [Copper transport protein family] -0.725 -0.305
125 258434_at AT3G16770 ATEBP, ethylene-responsive element binding protein, EBP, ethylene-responsive element binding protein, ERF72, ETHYLENE RESPONSE FACTOR 72, RAP2.3, RELATED TO AP2 3 -0.724 -0.094
126 256617_at AT3G22240 unknown -0.723 -0.091
127 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 -0.719 -0.065
128 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.716 -0.057
129 262010_at AT1G35612 [expressed protein] -0.713 0.031
130 252659_at AT3G44430 unknown -0.713 0.021
131 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] -0.704 -0.338
132 249896_at AT5G22530 unknown -0.695 -0.559
133 257591_at AT3G24900 AtRLP39, receptor like protein 39, RLP39, receptor like protein 39 -0.691 -0.077
134 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.683 0.140
135 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.673 -0.373
136 251633_at AT3G57460 [catalytics] -0.665 -0.363
137 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.659 -0.017
138 262731_at AT1G16420 ATMC8, ARABIDOPSIS THALIANA METACASPASE 8, AtMCP2e, metacaspase 2e, MC8, metacaspase 8, MCP2e, metacaspase 2e -0.652 -0.367
139 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.630 -0.099
140 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.627 0.072
141 254735_at AT4G13810 AtRLP47, receptor like protein 47, RLP47, receptor like protein 47 -0.624 -0.130
142 248079_at AT5G55790 unknown -0.619 0.060
143 256021_at AT1G58270 ZW9 -0.613 0.210
144 256603_at AT3G28270 unknown -0.611 0.296
145 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase -0.594 -0.534
146 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.583 -0.390
147 248016_at AT5G56380 [F-box/RNI-like/FBD-like domains-containing protein] -0.568 0.007
148 264156_at AT1G65280 [DNAJ heat shock N-terminal domain-containing protein] -0.563 -0.016
149 264166_at AT1G65370 [TRAF-like family protein] -0.556 0.129
150 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.554 -0.366
151 262507_at AT1G11330 [S-locus lectin protein kinase family protein] -0.552 -0.157
152 254585_at AT4G19500 [nucleoside-triphosphatases] -0.546 -0.055
153 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.546 0.065
154 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 -0.544 -0.341
155 248971_at AT5G45000 [Disease resistance protein (TIR-NBS-LRR class) family] -0.535 -0.457
156 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 -0.534 -0.259
157 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] -0.529 -0.053
158 262637_at AT1G06640 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.522 0.135
159 256741_at AT3G29375 [XH domain-containing protein] -0.519 0.073
160 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.517 -0.106
161 250433_at AT5G10400 H3.1, histone 3.1 -0.512 -0.049
162 263854_at AT2G04430 atnudt5, nudix hydrolase homolog 5, NUDT5, nudix hydrolase homolog 5 -0.504 -0.449
163 252937_at AT4G39180 ATSEC14, ARABIDOPSIS THALIANA SECRETION 14, SEC14, SECRETION 14 -0.500 0.085
164 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.495 -0.124
165 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] -0.492 -0.206
166 251076_at AT5G01970 unknown -0.483 -0.062
167 249486_at AT5G39030 [Protein kinase superfamily protein] -0.480 -0.088
168 256969_at AT3G21080 [ABC transporter-related] -0.474 -0.213
169 265302_at AT2G13970 [Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.472 -0.025
170 258424_at AT3G16750 unknown -0.471 0.134
171 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] -0.471 -0.182
172 262908_at AT1G59900 AT-E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit, E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit -0.471 -0.021
173 264666_at AT1G09680 [Pentatricopeptide repeat (PPR) superfamily protein] -0.465 -0.132
174 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.461 -0.022
175 248829_at AT5G47130 [Bax inhibitor-1 family protein] -0.454 -0.131
176 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.454 -0.551
177 245487_at AT4G16250 PHYD, phytochrome D -0.449 -0.060
178 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.448 -0.297
179 254847_at AT4G11850 MEE54, maternal effect embryo arrest 54, PLDGAMMA1, phospholipase D gamma 1 -0.443 -0.058