4.0:Information of module
Col 3d
In comparison with Ambient CO2 fully expanded leaf help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015711 organic anion transport BP 4.823e-15
GO:0006865 amino acid transport BP 1.585e-14
GO:0015849 organic acid transport BP 1.567e-13
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044272 sulfur compound biosynthetic process BP 5.570e-08
GO:0006790 sulfur compound metabolic process BP 9.510e-08
GO:1901605 alpha-amino acid metabolic process BP 1.144e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col 3d		 Log2 signal ratio
Ambient CO2 fully expanded leaf
1 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 1.211 -0.169
2 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 1.170 -0.621
3 260668_at AT1G19530 unknown 1.066 -0.268
4 258383_at AT3G15440 unknown 1.049 -1.023
5 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 1.018 -0.777
6 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 1.017 -0.152
7 265482_at AT2G15780 [Cupredoxin superfamily protein] 0.992 -0.829
8 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.966 -0.489
9 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.955 -0.727
10 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.938 -0.860
11 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.909 0.539
12 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.905 -0.829
13 250365_at AT5G11410 [Protein kinase superfamily protein] 0.848 -0.288
14 248141_at AT5G55010 unknown 0.841 -0.635
15 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 0.838 -0.692
16 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.818 0.683
17 247922_at AT5G57500 [Galactosyltransferase family protein] 0.808 -0.136
18 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.797 -1.211
19 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.757 -1.500
20 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 0.749 0.169
21 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.735 0.166
22 249773_at AT5G24140 SQP2, squalene monooxygenase 2 0.728 -1.015
23 259946_at AT1G71450 [Integrase-type DNA-binding superfamily protein] 0.687 -0.440
24 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.679 -0.424
25 258016_at AT3G19350 MPC, maternally expressed pab C-terminal 0.678 -1.097
26 254575_at AT4G19460 [UDP-Glycosyltransferase superfamily protein] 0.671 -0.680
27 251603_at AT3G57760 [Protein kinase superfamily protein] 0.664 -0.666
28 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 0.661 0.741
29 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.629 -0.438
30 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.626 -0.289
31 260335_at AT1G74000 SS3, strictosidine synthase 3 0.625 -0.351
32 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.624 -0.201
33 259134_at AT3G05390 unknown 0.602 -0.846
34 249459_at AT5G39580 [Peroxidase superfamily protein] 0.602 -0.727
35 245636_at AT1G25240 [ENTH/VHS/GAT family protein] 0.593 -0.646
36 248424_at AT5G51680 [hydroxyproline-rich glycoprotein family protein] 0.591 -0.322
37 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.585 -0.108
38 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] 0.579 -0.012
39 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 0.579 -0.519
40 266808_at AT2G29995 unknown 0.579 0.959
41 247617_at AT5G60270 LecRK-I.7, L-type lectin receptor kinase I.7 0.577 0.275
42 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.574 -1.338
43 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.572 -0.245
44 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.568 -0.632
45 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 0.567 -0.318
46 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.560 0.346
47 254293_at AT4G23060 IQD22, IQ-domain 22 0.547 0.343
48 259443_at AT1G02360 [Chitinase family protein] 0.531 -0.034
49 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.526 -0.898
50 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.526 -0.519
51 252118_at AT3G51400 unknown 0.524 -0.929
52 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] 0.524 -1.169
53 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 0.523 -0.563
54 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 0.520 -0.042
55 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.512 -0.022
56 256177_at AT1G51620 [Protein kinase superfamily protein] 0.512 -0.463
57 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.496 -0.224
58 260628_at AT1G62320 [ERD (early-responsive to dehydration stress) family protein] 0.496 -0.224
59 264773_at AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 0.494 0.053
60 253298_at AT4G33560 [Wound-responsive family protein] 0.493 -0.727
61 257978_at AT3G20860 ATNEK5, NIMA-related kinase 5, NEK5, NIMA-related kinase 5 0.485 0.423
62 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] 0.478 -1.180
63 265309_at AT2G20290 ATXIG, MYOSIN XI G, XIG, myosin-like protein XIG 0.478 -0.969
64 247532_at AT5G61560 [U-box domain-containing protein kinase family protein] 0.477 -0.458
65 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.475 0.442
66 248564_at AT5G49700 AHL17, AT-hook motif nuclear localized protein 17 0.475 -0.482
67 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor 0.472 -0.841
68 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.470 -0.004
69 260763_at AT1G49220 [RING/U-box superfamily protein] 0.470 -0.895
70 251097_at AT5G01560 LecRK-VI.4, L-type lectin receptor kinase VI.4, LECRKA4.3, lectin receptor kinase a4.3 0.470 -0.391
71 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.470 -0.267
72 262586_at AT1G15480 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.464 -0.779
73 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 0.463 1.015
74 253506_at AT4G31980 unknown 0.462 -0.533
75 250909_at AT5G03700 [D-mannose binding lectin protein with Apple-like carbohydrate-binding domain] 0.454 -0.105
76 251114_at AT5G01380 [Homeodomain-like superfamily protein] 0.451 -1.715
77 253819_at AT4G28350 LecRK-VII.2, L-type lectin receptor kinase VII.2 0.445 -1.078
78 261481_at AT1G14260 [RING/FYVE/PHD zinc finger superfamily protein] 0.438 0.483
79 246082_at AT5G20480 EFR, EF-TU receptor 0.436 -0.496
80 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.433 -0.256
81 253891_at AT4G27720 [Major facilitator superfamily protein] 0.432 0.904
82 252345_at AT3G48640 unknown 0.431 -0.590
83 262665_at AT1G14070 FUT7, fucosyltransferase 7 0.430 -0.765
84 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.429 -0.577
85 260362_at AT1G70530 CRK3, cysteine-rich RLK (RECEPTOR-like protein kinase) 3 0.429 -0.100
86 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.427 0.525
87 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.926 0.295
88 254328_at AT4G22570 APT3, adenine phosphoribosyl transferase 3 -0.651 0.589
89 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -0.597 0.324
90 252092_at AT3G51420 ATSSL4, STRICTOSIDINE SYNTHASE-LIKE 4, SSL4, strictosidine synthase-like 4 -0.594 0.560
91 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.592 -0.284
92 253859_at AT4G27657 unknown -0.570 0.647
93 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 -0.550 0.013
94 254803_at AT4G13100 [RING/U-box superfamily protein] -0.469 0.246
95 262304_at AT1G70890 MLP43, MLP-like protein 43 -0.468 0.258
96 255857_at AT1G67080 ABA4, abscisic acid (ABA)-deficient 4 -0.451 0.977
97 254870_at AT4G11900 [S-locus lectin protein kinase family protein] -0.446 0.240
98 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 -0.446 0.013
99 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.443 1.220
100 246591_at AT5G14880 KUP8, potassium uptake 8 -0.426 -0.064
101 245386_at AT4G14010 RALFL32, ralf-like 32 -0.414 0.296
102 253042_at AT4G37550 [Acetamidase/Formamidase family protein] -0.401 0.597
103 262552_at AT1G31350 KUF1, KAR-UP F-box 1 -0.400 -0.767
104 261315_at AT1G53170 ATERF-8, ATERF8, ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ERF8, ethylene response factor 8 -0.397 0.510
105 261138_at AT1G19710 [UDP-Glycosyltransferase superfamily protein] -0.386 -0.040
106 263875_at AT2G21970 SEP2, stress enhanced protein 2 -0.386 0.437
107 254119_at AT4G24780 [Pectin lyase-like superfamily protein] -0.381 1.017
108 256514_at AT1G66130 [NAD(P)-binding Rossmann-fold superfamily protein] -0.380 0.973
109 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.370 -0.488
110 248303_at AT5G53170 FTSH11, FTSH protease 11 -0.357 0.833
111 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.350 0.220
112 251665_at AT3G57040 ARR9, response regulator 9, ATRR4, RESPONSE REGULATOR 4 -0.350 0.517
113 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.348 -0.120
114 259760_at AT1G77580 unknown -0.335 -0.458
115 258495_at AT3G02690 [nodulin MtN21 /EamA-like transporter family protein] -0.328 0.536
116 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.327 0.430
117 248969_at AT5G45310 unknown -0.326 -0.362
118 254620_at AT4G18590 [Nucleic acid-binding, OB-fold-like protein] -0.322 -0.074
119 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.317 0.438
120 249838_at AT5G23460 unknown -0.317 0.096
121 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -0.315 0.655
122 250257_at AT5G13770 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.309 0.751
123 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.308 0.682
124 262713_at AT1G16520 unknown -0.304 0.948
125 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.304 0.085
126 253701_at AT4G29890 [choline monooxygenase, putative (CMO-like)] -0.300 1.118
127 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.298 0.697
128 251931_at AT3G53950 [glyoxal oxidase-related protein] -0.296 1.129
129 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.293 0.245
130 252853_at AT4G39710 FKBP16-2, FK506-binding protein 16-2, PnsL4, Photosynthetic NDH subcomplex L 4 -0.291 0.322
131 253283_at AT4G34090 unknown -0.282 0.401
132 247567_at AT5G61190 [putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain] -0.281 -0.594
133 247446_at AT5G62650 [Tic22-like family protein] -0.279 0.559
134 255583_at AT4G01510 ARV2 -0.275 0.656
135 258976_at AT3G01980 [NAD(P)-binding Rossmann-fold superfamily protein] -0.274 0.559
136 265726_at AT2G32010 CVL1, CVP2 like 1 -0.270 1.230
137 259061_at AT3G07410 AtRABA5b, RAB GTPase homolog A5B, RABA5b, RAB GTPase homolog A5B -0.268 -0.225
138 262940_at AT1G79520 [Cation efflux family protein] -0.264 0.033
139 250720_at AT5G06180 unknown -0.262 -0.452
140 253860_at AT4G27700 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.262 1.356
141 247038_at AT5G67160 EPS1, ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1 -0.258 -0.168
142 267356_at AT2G39930 ATISA1, ARABIDOPSIS THALIANA ISOAMYLASE 1, ISA1, isoamylase 1 -0.257 1.233
143 247889_at AT5G57930 APO2, ACCUMULATION OF PHOTOSYSTEM ONE 2, emb1629, embryo defective 1629 -0.256 1.409
144 262316_at AT2G48120 PAC, PALE CRESS -0.255 -0.060
145 247783_at AT5G58800 [Quinone reductase family protein] -0.254 0.372
146 258587_at AT3G04310 unknown -0.248 -0.202
147 249579_at AT5G37680 ARLA1A, ADP-ribosylation factor-like A1A, ATARLA1A, ADP-ribosylation factor-like A1A -0.247 0.470
148 245031_at AT2G26360 [Mitochondrial substrate carrier family protein] -0.247 0.850
149 245936_at AT5G19850 [alpha/beta-Hydrolases superfamily protein] -0.247 0.180
150 262753_at AT1G16340 ATKDSA2, ATKSDA -0.245 0.102
151 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 -0.241 0.672
152 254928_at AT4G11410 [NAD(P)-binding Rossmann-fold superfamily protein] -0.241 -0.083
153 259754_at AT1G71090 [Auxin efflux carrier family protein] -0.240 0.779
154 246194_at AT4G37000 ACD2, ACCELERATED CELL DEATH 2, ATRCCR, ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE -0.240 0.247
155 264096_at AT1G78995 unknown -0.235 0.804
156 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE -0.235 -0.270
157 245326_at AT4G14100 [transferases, transferring glycosyl groups] -0.232 -0.041
158 266963_at AT2G39450 ATMTP11, MTP11 -0.232 0.292
159 252154_at AT3G50880 [DNA glycosylase superfamily protein] -0.232 -0.471
160 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.232 0.352
161 255718_at AT1G32070 ATNSI, nuclear shuttle interacting, NSI, nuclear shuttle interacting -0.231 0.119
162 260498_at AT2G41710 [Integrase-type DNA-binding superfamily protein] -0.230 0.042
163 255760_at AT1G16780 AtVHP2;2, VHP2;2 -0.227 -0.283
164 247467_at AT5G62130 [Per1-like family protein] -0.227 0.172
165 262194_at AT1G77930 DJC65, DNA J protein C65 -0.226 0.721
166 266335_at AT2G32440 ATKAO2, ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, CYP88A4, KAO2, ent-kaurenoic acid hydroxylase 2 -0.225 0.833
167 252226_at AT3G49880 [glycosyl hydrolase family protein 43] -0.221 -0.371
168 250603_at AT5G07820 [Plant calmodulin-binding protein-related] -0.217 0.103
169 257067_at AT3G18270 pseudogene -0.216 0.396
170 261273_at AT1G26650 unknown -0.210 1.261
171 260592_at AT1G55850 ATCSLE1, CSLE1, cellulose synthase like E1 -0.210 0.489