4.0:Information of module
Elevated CO2 fully expanded leaf
In comparison with lht1 untreated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.899e-16
GO:0050896 response to stimulus BP 2.642e-16
GO:0010033 response to organic substance BP 4.728e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005975 carbohydrate metabolic process BP 5.625e-13
GO:0044723 single-organism carbohydrate metabolic p... BP 1.536e-12
GO:0005976 polysaccharide metabolic process BP 1.561e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Elevated CO2 fully expanded leaf		 Log2 signal ratio
lht1 untreated
1 259559_at AT1G21240 WAK3, wall associated kinase 3 0.400 0.624
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.366 -0.014
3 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like 0.347 0.096
4 248846_at AT5G46500 unknown 0.338 0.086
5 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.320 0.490
6 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.298 0.419
7 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.286 0.059
8 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.286 0.217
9 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.279 0.305
10 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.269 0.377
11 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.266 0.313
12 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.258 0.291
13 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.251 0.277
14 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.236 0.050
15 259735_at AT1G64405 unknown 0.233 -0.010
16 258100_at AT3G23550 [MATE efflux family protein] 0.229 -0.020
17 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.222 0.394
18 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.214 0.758
19 264635_at AT1G65500 unknown 0.211 -0.002
20 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.207 0.346
21 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.189 -0.046
22 258370_at AT3G14395 unknown 0.184 0.017
23 260556_at AT2G43620 [Chitinase family protein] 0.179 0.194
24 249726_at AT5G35480 unknown 0.176 0.089
25 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.175 0.485
26 262231_at AT1G68740 PHO1;H1 0.174 0.094
27 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.172 0.451
28 253911_at AT4G27300 [S-locus lectin protein kinase family protein] 0.163 -0.019
29 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.163 0.038
30 249242_at AT5G42250 [Zinc-binding alcohol dehydrogenase family protein] 0.160 0.019
31 258979_at AT3G09440 [Heat shock protein 70 (Hsp 70) family protein] 0.159 0.253
32 252470_at AT3G46930 [Protein kinase superfamily protein] 0.158 0.068
33 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.155 0.176
34 267515_at AT2G45680 TCP9, TCP domain protein 9 0.155 0.261
35 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] 0.152 0.011
36 262902_x_at AT1G59930 [MADS-box family protein] 0.150 -0.094
37 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.149 0.513
38 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 0.148 0.736
39 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.146 0.215
40 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 0.142 -0.109
41 255627_at AT4G00955 unknown 0.141 0.364
42 246582_at AT1G31750 [proline-rich family protein] 0.140 0.034
43 249721_at AT5G24655 LSU4, RESPONSE TO LOW SULFUR 4 0.137 0.053
44 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.134 0.123
45 254839_at AT4G12400 Hop3, Hop3 0.133 0.245
46 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.133 -0.075
47 265083_at AT1G03820 unknown 0.132 -0.001
48 246125_at AT5G19875 unknown 0.132 0.474
49 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.131 0.287
50 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.131 -0.028
51 256922_at AT3G19010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.130 0.079
52 258078_at AT3G25870 unknown 0.129 0.123
53 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.129 0.244
54 246247_at AT4G36640 [Sec14p-like phosphatidylinositol transfer family protein] 0.128 0.286
55 265327_at AT2G18210 unknown 0.128 -0.020
56 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 0.128 -0.018
57 257206_at AT3G16530 [Legume lectin family protein] 0.127 0.163
58 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] 0.127 -0.039
59 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.122 -0.039
60 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.120 -0.144
61 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.120 0.172
62 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.120 0.510
63 255243_at AT4G05590 unknown 0.119 0.204
64 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.118 0.107
65 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.118 0.215
66 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.118 0.294
67 251722_at AT3G56200 [Transmembrane amino acid transporter family protein] 0.116 0.177
68 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.115 0.155
69 257322_at ATMG01180 ORF111B 0.114 0.067
70 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] 0.114 -0.062
71 254289_at AT4G22980 unknown 0.113 0.214
72 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] 0.113 0.080
73 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] 0.112 0.042
74 264645_at AT1G08940 [Phosphoglycerate mutase family protein] 0.109 0.114
75 265012_at AT1G24470 ATKCR2, KCR2, beta-ketoacyl reductase 2 0.107 -0.027
76 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 0.107 -0.045
77 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.104 0.233
78 251725_at AT3G56260 unknown 0.102 0.100
79 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.102 0.241
80 252539_at AT3G45730 unknown 0.101 0.125
81 264627_at AT1G65520 ATECI1, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1, ECHIC, ENOYL-COA HYDRATASE/ISOMERASE C, ECI1, delta(3), delta(2)-enoyl CoA isomerase 1, PEC11 0.101 -0.074
82 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.097 0.076
83 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 0.096 0.251
84 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.096 0.023
85 267064_at AT2G41110 ATCAL5, CAM2, calmodulin 2 0.095 0.246
86 266231_at AT2G02220 ATPSKR1, PHYTOSULFOKIN RECEPTOR 1, PSKR1, phytosulfokin receptor 1 0.094 0.043
87 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.094 0.686
88 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.093 0.222
89 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.093 0.087
90 250388_at AT5G11310 [Pentatricopeptide repeat (PPR) superfamily protein] 0.091 -0.013
91 261456_at AT1G21050 unknown 0.091 -0.017
92 263752_at AT2G21310 [copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.090 -0.030
93 261023_at AT1G12200 FMO, flavin monooxygenase 0.090 0.139
94 250916_at AT5G03630 ATMDAR2 0.090 0.048
95 246987_at AT5G67300 ATMYB44, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, ATMYBR1, MYB44, MYBR1, myb domain protein r1 0.090 0.014
96 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 0.089 -0.204
97 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.361 0.110
98 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.215 -0.452
99 250958_at AT5G03260 LAC11, laccase 11 -0.211 -0.092
100 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 -0.207 -0.136
101 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] -0.196 -0.184
102 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.193 -0.168
103 248509_at AT5G50335 unknown -0.185 -0.563
104 254118_at AT4G24790 [AAA-type ATPase family protein] -0.184 0.025
105 258326_at AT3G22760 SOL1 -0.183 0.107
106 246783_at AT5G27360 SFP2 -0.179 -0.027
107 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.174 -0.089
108 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.163 -0.222
109 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.155 -0.429
110 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.155 -0.297
111 258227_at AT3G15620 UVR3, UV REPAIR DEFECTIVE 3 -0.153 0.024
112 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.148 -0.322
113 255285_at AT4G04630 unknown -0.147 -0.210
114 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 -0.145 -0.062
115 256672_at AT3G52310 ABCG27, ATP-binding cassette G27 -0.144 0.023
116 259209_at AT3G09160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.144 -0.128
117 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 -0.141 0.090
118 245657_at AT1G56720 [Protein kinase superfamily protein] -0.140 -0.376
119 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.138 -0.074
120 257151_at AT3G27200 [Cupredoxin superfamily protein] -0.138 -0.152
121 267205_at AT2G30820 unknown -0.137 0.057
122 262662_at AT1G13920 [Remorin family protein] -0.137 -0.131
123 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] -0.136 -0.158
124 254787_at AT4G12690 unknown -0.134 -0.258
125 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana -0.129 -0.155
126 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.128 0.070
127 267639_at AT2G42200 AtSPL9, SPL9, squamosa promoter binding protein-like 9 -0.128 -0.113
128 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 -0.127 -0.142
129 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.127 -0.703
130 261502_at AT1G14440 AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, HB31, homeobox protein 31, ZHD4, ZINC FINGER HOMEODOMAIN 4 -0.127 -0.145
131 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.124 -0.186
132 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.123 -0.158
133 263629_at AT2G04850 [Auxin-responsive family protein] -0.123 -0.042
134 255939_at AT1G12730 [GPI transamidase subunit PIG-U] -0.122 -0.156
135 264369_at AT1G70430 [Protein kinase superfamily protein] -0.122 -0.114
136 263177_at AT1G05540 unknown -0.122 -0.063
137 255329_at AT4G04370 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.121 -0.043
138 251249_at AT3G62160 [HXXXD-type acyl-transferase family protein] -0.120 -0.107
139 245864_at AT1G58070 unknown -0.119 -0.014
140 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 -0.118 -0.211
141 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.118 -0.127
142 261451_at AT1G21060 unknown -0.118 -0.083
143 256721_at AT2G34150 ATRANGAP2, ATSCAR1, SCAR1, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1 -0.117 0.244
144 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 -0.117 -0.008
145 255032_at AT4G09500 [UDP-Glycosyltransferase superfamily protein] -0.116 0.100
146 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.116 -0.346
147 245800_at AT1G46264 AT-HSFB4, HSFB4, heat shock transcription factor B4, SCZ, SCHIZORIZA -0.116 -0.066
148 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] -0.116 -0.036
149 266460_at AT2G47930 AGP26, arabinogalactan protein 26, ATAGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26 -0.115 -0.209
150 266946_at AT2G18890 [Protein kinase superfamily protein] -0.115 -0.065
151 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.115 -0.479
152 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 -0.114 0.136
153 257137_at AT3G28860 ABCB19, ATP-binding cassette B19, ATABCB19, Arabidopsis thaliana ATP-binding cassette B19, ATMDR1, ATMDR11, MULTIDRUG RESISTANCE PROTEIN 11, ATPGP19, MDR1, MDR11, PGP19, P-GLYCOPROTEIN 19 -0.114 -0.235
154 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 -0.113 -0.107
155 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.112 0.065
156 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.112 -0.170
157 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.112 -0.149
158 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 -0.111 -0.028
159 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 -0.111 -0.485
160 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f -0.111 -0.121
161 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 -0.111 -0.260
162 249367_at AT5G40630 [Ubiquitin-like superfamily protein] -0.110 -0.125
163 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.109 -0.354
164 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.109 -0.030
165 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.109 -0.154
166 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 -0.108 -0.144
167 264288_at AT1G62045 unknown -0.107 -0.174
168 262847_at AT1G14840 ATMAP70-4, microtubule-associated proteins 70-4, MAP70-4, microtubule-associated proteins 70-4 -0.107 -0.119
169 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.107 0.092
170 253771_at AT4G28430 [Reticulon family protein] -0.106 -0.009
171 262940_at AT1G79520 [Cation efflux family protein] -0.106 0.068
172 251227_at AT3G62700 ABCC14, ATP-binding cassette C14, ATMRP10, multidrug resistance-associated protein 10, MRP10, multidrug resistance-associated protein 10 -0.106 -0.083
173 266912_at AT2G45900 TRM13, TON1 Recruiting Motif 13 -0.105 0.033
174 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.105 -0.167
175 245461_at AT4G17000 unknown -0.104 -0.000
176 260363_at AT1G70550 unknown -0.104 0.011
177 263495_at AT2G42530 COR15B, cold regulated 15b -0.104 -0.392
178 250011_at AT5G18475 [Pentatricopeptide repeat (PPR) superfamily protein] -0.104 -0.096
179 250265_at AT5G12900 unknown -0.104 -0.028
180 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.104 -0.183
181 250233_at AT5G13460 IQD11, IQ-domain 11 -0.103 -0.140
182 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE -0.103 -0.205
183 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.103 0.076
184 267429_at AT2G34850 MEE25, maternal effect embryo arrest 25 -0.103 -0.027
185 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] -0.102 -0.062
186 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.100 -0.174
187 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.100 -0.111
188 258944_at AT3G10390 FLD, FLOWERING LOCUS D -0.100 -0.073
189 245598_at AT4G14200 [Pentatricopeptide repeat (PPR) superfamily protein] -0.099 0.025
190 251564_at AT3G58160 ATMYOS3, ATXIJ, MYOSIN XI J, MYA3, MYOSIN A3, XI-16, MYOSIN XI-16, XIJ -0.099 -0.216
191 257210_at AT3G14950 TTL2, tetratricopetide-repeat thioredoxin-like 2 -0.098 -0.004