4.0:Information of module
Elevated CO2 fully expanded leaf
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.899e-16
GO:0050896 response to stimulus BP 2.642e-16
GO:0010033 response to organic substance BP 4.728e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005975 carbohydrate metabolic process BP 5.625e-13
GO:0044723 single-organism carbohydrate metabolic p... BP 1.536e-12
GO:0005976 polysaccharide metabolic process BP 1.561e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Elevated CO2 fully expanded leaf		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 259559_at AT1G21240 WAK3, wall associated kinase 3 0.400 -0.890
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.366 -0.562
3 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like 0.347 -0.989
4 248846_at AT5G46500 unknown 0.338 -0.581
5 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.320 -0.564
6 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.298 0.272
7 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.286 0.393
8 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.286 0.632
9 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.279 -0.341
10 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.269 -1.044
11 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.266 -0.498
12 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.258 0.789
13 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.251 -0.123
14 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.236 -0.915
15 259735_at AT1G64405 unknown 0.233 -0.501
16 258100_at AT3G23550 [MATE efflux family protein] 0.229 -0.557
17 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.222 -1.092
18 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.214 -0.974
19 264635_at AT1G65500 unknown 0.211 0.205
20 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.207 -1.399
21 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.189 -0.177
22 258370_at AT3G14395 unknown 0.184 -0.470
23 260556_at AT2G43620 [Chitinase family protein] 0.179 0.373
24 249726_at AT5G35480 unknown 0.176 -0.044
25 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.175 1.077
26 262231_at AT1G68740 PHO1;H1 0.174 -0.329
27 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.172 -0.205
28 253911_at AT4G27300 [S-locus lectin protein kinase family protein] 0.163 -0.569
29 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.163 0.996
30 249242_at AT5G42250 [Zinc-binding alcohol dehydrogenase family protein] 0.160 0.548
31 258979_at AT3G09440 [Heat shock protein 70 (Hsp 70) family protein] 0.159 0.720
32 252470_at AT3G46930 [Protein kinase superfamily protein] 0.158 0.249
33 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.155 1.036
34 267515_at AT2G45680 TCP9, TCP domain protein 9 0.155 -0.283
35 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] 0.152 0.424
36 262902_x_at AT1G59930 [MADS-box family protein] 0.150 -0.330
37 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.149 0.824
38 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 0.148 0.071
39 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.146 -0.454
40 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 0.142 0.153
41 255627_at AT4G00955 unknown 0.141 0.120
42 246582_at AT1G31750 [proline-rich family protein] 0.140 0.157
43 249721_at AT5G24655 LSU4, RESPONSE TO LOW SULFUR 4 0.137 0.428
44 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.134 0.509
45 254839_at AT4G12400 Hop3, Hop3 0.133 0.466
46 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.133 -1.405
47 265083_at AT1G03820 unknown 0.132 -0.379
48 246125_at AT5G19875 unknown 0.132 -0.673
49 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.131 -0.404
50 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.131 0.441
51 256922_at AT3G19010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.130 0.347
52 258078_at AT3G25870 unknown 0.129 -0.045
53 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.129 -0.140
54 246247_at AT4G36640 [Sec14p-like phosphatidylinositol transfer family protein] 0.128 -0.564
55 265327_at AT2G18210 unknown 0.128 -0.373
56 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 0.128 -0.607
57 257206_at AT3G16530 [Legume lectin family protein] 0.127 0.716
58 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] 0.127 0.425
59 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.122 0.427
60 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.120 -0.604
61 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.120 0.489
62 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.120 -0.912
63 255243_at AT4G05590 unknown 0.119 -1.220
64 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.118 -0.933
65 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.118 -0.700
66 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.118 0.062
67 251722_at AT3G56200 [Transmembrane amino acid transporter family protein] 0.116 0.469
68 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.115 0.714
69 257322_at ATMG01180 ORF111B 0.114 -1.308
70 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] 0.114 -0.849
71 254289_at AT4G22980 unknown 0.113 0.086
72 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] 0.113 0.090
73 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] 0.112 1.129
74 264645_at AT1G08940 [Phosphoglycerate mutase family protein] 0.109 -0.513
75 265012_at AT1G24470 ATKCR2, KCR2, beta-ketoacyl reductase 2 0.107 -0.089
76 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 0.107 0.403
77 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.104 -0.837
78 251725_at AT3G56260 unknown 0.102 0.292
79 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.102 -0.582
80 252539_at AT3G45730 unknown 0.101 -1.435
81 264627_at AT1G65520 ATECI1, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1, ECHIC, ENOYL-COA HYDRATASE/ISOMERASE C, ECI1, delta(3), delta(2)-enoyl CoA isomerase 1, PEC11 0.101 0.450
82 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.097 0.663
83 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 0.096 0.886
84 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.096 1.239
85 267064_at AT2G41110 ATCAL5, CAM2, calmodulin 2 0.095 0.246
86 266231_at AT2G02220 ATPSKR1, PHYTOSULFOKIN RECEPTOR 1, PSKR1, phytosulfokin receptor 1 0.094 -0.216
87 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.094 0.714
88 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.093 -0.845
89 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.093 -0.329
90 250388_at AT5G11310 [Pentatricopeptide repeat (PPR) superfamily protein] 0.091 -0.817
91 261456_at AT1G21050 unknown 0.091 0.620
92 263752_at AT2G21310 [copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.090 -0.225
93 261023_at AT1G12200 FMO, flavin monooxygenase 0.090 -0.689
94 250916_at AT5G03630 ATMDAR2 0.090 0.498
95 246987_at AT5G67300 ATMYB44, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, ATMYBR1, MYB44, MYBR1, myb domain protein r1 0.090 0.973
96 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 0.089 -0.551
97 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.361 -0.756
98 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.215 0.302
99 250958_at AT5G03260 LAC11, laccase 11 -0.211 -0.745
100 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 -0.207 -0.970
101 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] -0.196 -0.164
102 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.193 0.127
103 248509_at AT5G50335 unknown -0.185 -0.376
104 254118_at AT4G24790 [AAA-type ATPase family protein] -0.184 -0.005
105 258326_at AT3G22760 SOL1 -0.183 0.228
106 246783_at AT5G27360 SFP2 -0.179 0.265
107 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.174 -0.640
108 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.163 0.118
109 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.155 -0.351
110 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.155 -0.905
111 258227_at AT3G15620 UVR3, UV REPAIR DEFECTIVE 3 -0.153 0.158
112 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.148 0.078
113 255285_at AT4G04630 unknown -0.147 0.183
114 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 -0.145 -0.704
115 256672_at AT3G52310 ABCG27, ATP-binding cassette G27 -0.144 -0.018
116 259209_at AT3G09160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.144 -0.022
117 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 -0.141 0.731
118 245657_at AT1G56720 [Protein kinase superfamily protein] -0.140 -0.714
119 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.138 0.467
120 257151_at AT3G27200 [Cupredoxin superfamily protein] -0.138 0.196
121 267205_at AT2G30820 unknown -0.137 -0.462
122 262662_at AT1G13920 [Remorin family protein] -0.137 -1.209
123 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] -0.136 -0.699
124 254787_at AT4G12690 unknown -0.134 0.159
125 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana -0.129 -0.766
126 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.128 -1.257
127 267639_at AT2G42200 AtSPL9, SPL9, squamosa promoter binding protein-like 9 -0.128 -0.348
128 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 -0.127 0.400
129 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.127 -1.145
130 261502_at AT1G14440 AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, HB31, homeobox protein 31, ZHD4, ZINC FINGER HOMEODOMAIN 4 -0.127 0.312
131 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.124 -0.291
132 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.123 0.224
133 263629_at AT2G04850 [Auxin-responsive family protein] -0.123 -0.592
134 255939_at AT1G12730 [GPI transamidase subunit PIG-U] -0.122 -0.965
135 264369_at AT1G70430 [Protein kinase superfamily protein] -0.122 0.233
136 263177_at AT1G05540 unknown -0.122 0.043
137 255329_at AT4G04370 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.121 -0.635
138 251249_at AT3G62160 [HXXXD-type acyl-transferase family protein] -0.120 -0.208
139 245864_at AT1G58070 unknown -0.119 -0.163
140 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 -0.118 0.397
141 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.118 -0.058
142 261451_at AT1G21060 unknown -0.118 -0.142
143 256721_at AT2G34150 ATRANGAP2, ATSCAR1, SCAR1, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1 -0.117 0.176
144 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 -0.117 -0.695
145 255032_at AT4G09500 [UDP-Glycosyltransferase superfamily protein] -0.116 -1.069
146 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.116 -0.430
147 245800_at AT1G46264 AT-HSFB4, HSFB4, heat shock transcription factor B4, SCZ, SCHIZORIZA -0.116 -0.276
148 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] -0.116 -0.678
149 266460_at AT2G47930 AGP26, arabinogalactan protein 26, ATAGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26 -0.115 0.970
150 266946_at AT2G18890 [Protein kinase superfamily protein] -0.115 0.273
151 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.115 0.031
152 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 -0.114 0.588
153 257137_at AT3G28860 ABCB19, ATP-binding cassette B19, ATABCB19, Arabidopsis thaliana ATP-binding cassette B19, ATMDR1, ATMDR11, MULTIDRUG RESISTANCE PROTEIN 11, ATPGP19, MDR1, MDR11, PGP19, P-GLYCOPROTEIN 19 -0.114 0.151
154 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 -0.113 0.060
155 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.112 -0.503
156 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.112 -0.117
157 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.112 0.145
158 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 -0.111 -0.742
159 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 -0.111 -0.169
160 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f -0.111 -1.037
161 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 -0.111 -0.137
162 249367_at AT5G40630 [Ubiquitin-like superfamily protein] -0.110 -0.770
163 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.109 -1.133
164 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.109 -0.996
165 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.109 -0.773
166 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 -0.108 0.789
167 264288_at AT1G62045 unknown -0.107 0.837
168 262847_at AT1G14840 ATMAP70-4, microtubule-associated proteins 70-4, MAP70-4, microtubule-associated proteins 70-4 -0.107 -0.135
169 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.107 0.245
170 253771_at AT4G28430 [Reticulon family protein] -0.106 -0.956
171 262940_at AT1G79520 [Cation efflux family protein] -0.106 -0.145
172 251227_at AT3G62700 ABCC14, ATP-binding cassette C14, ATMRP10, multidrug resistance-associated protein 10, MRP10, multidrug resistance-associated protein 10 -0.106 0.153
173 266912_at AT2G45900 TRM13, TON1 Recruiting Motif 13 -0.105 -0.867
174 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.105 0.997
175 245461_at AT4G17000 unknown -0.104 -0.075
176 260363_at AT1G70550 unknown -0.104 -0.012
177 263495_at AT2G42530 COR15B, cold regulated 15b -0.104 -0.025
178 250011_at AT5G18475 [Pentatricopeptide repeat (PPR) superfamily protein] -0.104 -0.141
179 250265_at AT5G12900 unknown -0.104 0.053
180 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.104 -0.565
181 250233_at AT5G13460 IQD11, IQ-domain 11 -0.103 0.451
182 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE -0.103 -0.195
183 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.103 0.299
184 267429_at AT2G34850 MEE25, maternal effect embryo arrest 25 -0.103 -0.512
185 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] -0.102 0.112
186 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.100 0.951
187 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.100 0.165
188 258944_at AT3G10390 FLD, FLOWERING LOCUS D -0.100 0.550
189 245598_at AT4G14200 [Pentatricopeptide repeat (PPR) superfamily protein] -0.099 -0.265
190 251564_at AT3G58160 ATMYOS3, ATXIJ, MYOSIN XI J, MYA3, MYOSIN A3, XI-16, MYOSIN XI-16, XIJ -0.099 -0.552
191 257210_at AT3G14950 TTL2, tetratricopetide-repeat thioredoxin-like 2 -0.098 -1.209