4.0:Information of module
Elevated CO2 fully expanded leaf
In comparison with seedlings by volatiles from leafminer damaged Lima bean 48h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.899e-16
GO:0050896 response to stimulus BP 2.642e-16
GO:0010033 response to organic substance BP 4.728e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005975 carbohydrate metabolic process BP 5.625e-13
GO:0044723 single-organism carbohydrate metabolic p... BP 1.536e-12
GO:0005976 polysaccharide metabolic process BP 1.561e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Elevated CO2 fully expanded leaf		 Log2 signal ratio
seedlings by volatiles from leafminer damaged Lima bean 48h
1 259559_at AT1G21240 WAK3, wall associated kinase 3 0.400 0.011
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.366 0.578
3 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like 0.347 -0.030
4 248846_at AT5G46500 unknown 0.338 0.007
5 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.320 -0.177
6 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.298 0.183
7 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.286 0.216
8 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.286 0.134
9 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.279 0.080
10 261242_at AT1G32960 ATSBT3.3, SBT3.3 0.269 0.101
11 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.266 -0.191
12 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.258 0.165
13 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.251 0.145
14 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.236 0.094
15 259735_at AT1G64405 unknown 0.233 0.030
16 258100_at AT3G23550 [MATE efflux family protein] 0.229 0.181
17 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.222 -0.004
18 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.214 0.266
19 264635_at AT1G65500 unknown 0.211 0.041
20 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.207 -0.032
21 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.189 0.051
22 258370_at AT3G14395 unknown 0.184 -0.082
23 260556_at AT2G43620 [Chitinase family protein] 0.179 -0.046
24 249726_at AT5G35480 unknown 0.176 -0.140
25 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.175 -0.061
26 262231_at AT1G68740 PHO1;H1 0.174 0.094
27 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.172 -0.162
28 253911_at AT4G27300 [S-locus lectin protein kinase family protein] 0.163 0.081
29 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.163 0.037
30 249242_at AT5G42250 [Zinc-binding alcohol dehydrogenase family protein] 0.160 -0.077
31 258979_at AT3G09440 [Heat shock protein 70 (Hsp 70) family protein] 0.159 0.061
32 252470_at AT3G46930 [Protein kinase superfamily protein] 0.158 0.109
33 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.155 0.128
34 267515_at AT2G45680 TCP9, TCP domain protein 9 0.155 -0.004
35 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] 0.152 -0.045
36 262902_x_at AT1G59930 [MADS-box family protein] 0.150 -0.061
37 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.149 0.052
38 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 0.148 -0.089
39 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.146 -0.035
40 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 0.142 0.023
41 255627_at AT4G00955 unknown 0.141 0.006
42 246582_at AT1G31750 [proline-rich family protein] 0.140 0.087
43 249721_at AT5G24655 LSU4, RESPONSE TO LOW SULFUR 4 0.137 0.115
44 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.134 0.124
45 254839_at AT4G12400 Hop3, Hop3 0.133 0.084
46 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.133 0.102
47 265083_at AT1G03820 unknown 0.132 0.047
48 246125_at AT5G19875 unknown 0.132 0.077
49 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.131 0.064
50 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.131 0.175
51 256922_at AT3G19010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.130 0.026
52 258078_at AT3G25870 unknown 0.129 -0.039
53 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.129 0.108
54 246247_at AT4G36640 [Sec14p-like phosphatidylinositol transfer family protein] 0.128 0.136
55 265327_at AT2G18210 unknown 0.128 -0.000
56 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 0.128 -0.063
57 257206_at AT3G16530 [Legume lectin family protein] 0.127 0.123
58 265028_at AT1G24530 [Transducin/WD40 repeat-like superfamily protein] 0.127 -0.002
59 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.122 0.091
60 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.120 0.176
61 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.120 0.153
62 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.120 0.232
63 255243_at AT4G05590 unknown 0.119 0.081
64 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.118 0.098
65 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.118 0.238
66 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.118 0.063
67 251722_at AT3G56200 [Transmembrane amino acid transporter family protein] 0.116 0.129
68 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.115 0.144
69 257322_at ATMG01180 ORF111B 0.114 -0.056
70 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] 0.114 -0.010
71 254289_at AT4G22980 unknown 0.113 0.106
72 253113_at AT4G35985 [Senescence/dehydration-associated protein-related] 0.113 0.052
73 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] 0.112 0.201
74 264645_at AT1G08940 [Phosphoglycerate mutase family protein] 0.109 0.045
75 265012_at AT1G24470 ATKCR2, KCR2, beta-ketoacyl reductase 2 0.107 -0.046
76 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 0.107 0.079
77 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.104 0.049
78 251725_at AT3G56260 unknown 0.102 0.205
79 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.102 0.153
80 252539_at AT3G45730 unknown 0.101 -0.154
81 264627_at AT1G65520 ATECI1, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1, ECHIC, ENOYL-COA HYDRATASE/ISOMERASE C, ECI1, delta(3), delta(2)-enoyl CoA isomerase 1, PEC11 0.101 0.059
82 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.097 0.262
83 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 0.096 0.129
84 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.096 0.229
85 267064_at AT2G41110 ATCAL5, CAM2, calmodulin 2 0.095 -0.003
86 266231_at AT2G02220 ATPSKR1, PHYTOSULFOKIN RECEPTOR 1, PSKR1, phytosulfokin receptor 1 0.094 -0.093
87 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.094 0.131
88 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] 0.093 0.034
89 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.093 0.157
90 250388_at AT5G11310 [Pentatricopeptide repeat (PPR) superfamily protein] 0.091 0.059
91 261456_at AT1G21050 unknown 0.091 -0.043
92 263752_at AT2G21310 [copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.090 -0.061
93 261023_at AT1G12200 FMO, flavin monooxygenase 0.090 0.196
94 250916_at AT5G03630 ATMDAR2 0.090 0.084
95 246987_at AT5G67300 ATMYB44, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, ATMYBR1, MYB44, MYBR1, myb domain protein r1 0.090 0.061
96 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 0.089 0.027
97 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.361 0.009
98 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.215 -0.306
99 250958_at AT5G03260 LAC11, laccase 11 -0.211 -0.015
100 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 -0.207 -0.341
101 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] -0.196 -0.222
102 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.193 -0.082
103 248509_at AT5G50335 unknown -0.185 0.172
104 254118_at AT4G24790 [AAA-type ATPase family protein] -0.184 -0.047
105 258326_at AT3G22760 SOL1 -0.183 -0.019
106 246783_at AT5G27360 SFP2 -0.179 -0.214
107 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.174 -0.042
108 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.163 0.029
109 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.155 -0.187
110 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.155 -0.051
111 258227_at AT3G15620 UVR3, UV REPAIR DEFECTIVE 3 -0.153 -0.275
112 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.148 -0.337
113 255285_at AT4G04630 unknown -0.147 -0.126
114 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 -0.145 -0.063
115 256672_at AT3G52310 ABCG27, ATP-binding cassette G27 -0.144 -0.015
116 259209_at AT3G09160 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.144 -0.094
117 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 -0.141 -0.154
118 245657_at AT1G56720 [Protein kinase superfamily protein] -0.140 -0.175
119 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.138 -0.044
120 257151_at AT3G27200 [Cupredoxin superfamily protein] -0.138 -0.001
121 267205_at AT2G30820 unknown -0.137 -0.031
122 262662_at AT1G13920 [Remorin family protein] -0.137 0.013
123 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] -0.136 -0.176
124 254787_at AT4G12690 unknown -0.134 -0.225
125 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana -0.129 -0.037
126 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.128 -0.048
127 267639_at AT2G42200 AtSPL9, SPL9, squamosa promoter binding protein-like 9 -0.128 0.026
128 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 -0.127 -0.036
129 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.127 -0.193
130 261502_at AT1G14440 AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, HB31, homeobox protein 31, ZHD4, ZINC FINGER HOMEODOMAIN 4 -0.127 0.017
131 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.124 -0.119
132 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.123 0.010
133 263629_at AT2G04850 [Auxin-responsive family protein] -0.123 -0.051
134 255939_at AT1G12730 [GPI transamidase subunit PIG-U] -0.122 0.008
135 264369_at AT1G70430 [Protein kinase superfamily protein] -0.122 -0.122
136 263177_at AT1G05540 unknown -0.122 -0.010
137 255329_at AT4G04370 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.121 0.015
138 251249_at AT3G62160 [HXXXD-type acyl-transferase family protein] -0.120 -0.066
139 245864_at AT1G58070 unknown -0.119 -0.001
140 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 -0.118 -0.121
141 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.118 -0.064
142 261451_at AT1G21060 unknown -0.118 -0.214
143 256721_at AT2G34150 ATRANGAP2, ATSCAR1, SCAR1, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1 -0.117 -0.076
144 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 -0.117 -0.047
145 255032_at AT4G09500 [UDP-Glycosyltransferase superfamily protein] -0.116 0.059
146 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.116 -0.042
147 245800_at AT1G46264 AT-HSFB4, HSFB4, heat shock transcription factor B4, SCZ, SCHIZORIZA -0.116 0.031
148 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] -0.116 -0.039
149 266460_at AT2G47930 AGP26, arabinogalactan protein 26, ATAGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26 -0.115 -0.180
150 266946_at AT2G18890 [Protein kinase superfamily protein] -0.115 -0.141
151 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.115 -0.051
152 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 -0.114 -0.185
153 257137_at AT3G28860 ABCB19, ATP-binding cassette B19, ATABCB19, Arabidopsis thaliana ATP-binding cassette B19, ATMDR1, ATMDR11, MULTIDRUG RESISTANCE PROTEIN 11, ATPGP19, MDR1, MDR11, PGP19, P-GLYCOPROTEIN 19 -0.114 -0.103
154 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 -0.113 0.043
155 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.112 0.164
156 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.112 -0.057
157 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.112 -0.075
158 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 -0.111 -0.164
159 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 -0.111 -0.133
160 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f -0.111 0.074
161 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 -0.111 0.092
162 249367_at AT5G40630 [Ubiquitin-like superfamily protein] -0.110 -0.081
163 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.109 -0.103
164 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 -0.109 -0.135
165 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.109 0.319
166 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 -0.108 0.004
167 264288_at AT1G62045 unknown -0.107 0.036
168 262847_at AT1G14840 ATMAP70-4, microtubule-associated proteins 70-4, MAP70-4, microtubule-associated proteins 70-4 -0.107 -0.070
169 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.107 0.010
170 253771_at AT4G28430 [Reticulon family protein] -0.106 0.001
171 262940_at AT1G79520 [Cation efflux family protein] -0.106 0.031
172 251227_at AT3G62700 ABCC14, ATP-binding cassette C14, ATMRP10, multidrug resistance-associated protein 10, MRP10, multidrug resistance-associated protein 10 -0.106 -0.043
173 266912_at AT2G45900 TRM13, TON1 Recruiting Motif 13 -0.105 0.002
174 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.105 0.113
175 245461_at AT4G17000 unknown -0.104 -0.048
176 260363_at AT1G70550 unknown -0.104 -0.061
177 263495_at AT2G42530 COR15B, cold regulated 15b -0.104 0.080
178 250011_at AT5G18475 [Pentatricopeptide repeat (PPR) superfamily protein] -0.104 -0.019
179 250265_at AT5G12900 unknown -0.104 -0.142
180 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.104 0.059
181 250233_at AT5G13460 IQD11, IQ-domain 11 -0.103 -0.081
182 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE -0.103 -0.077
183 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.103 -0.067
184 267429_at AT2G34850 MEE25, maternal effect embryo arrest 25 -0.103 0.036
185 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] -0.102 -0.044
186 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.100 -0.037
187 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.100 -0.125
188 258944_at AT3G10390 FLD, FLOWERING LOCUS D -0.100 0.005
189 245598_at AT4G14200 [Pentatricopeptide repeat (PPR) superfamily protein] -0.099 -0.021
190 251564_at AT3G58160 ATMYOS3, ATXIJ, MYOSIN XI J, MYA3, MYOSIN A3, XI-16, MYOSIN XI-16, XIJ -0.099 -0.089
191 257210_at AT3G14950 TTL2, tetratricopetide-repeat thioredoxin-like 2 -0.098 0.004