4.0:Information of module
FLIGHT TAGESB plate6 ROOTS
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 7.827e-74
GO:0010243 response to organonitrogen compound BP 1.129e-72
GO:1901698 response to nitrogen compound BP 1.888e-55
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001666 response to hypoxia BP 4.130e-08
GO:0036293 response to decreased oxygen levels BP 5.528e-08
GO:0070482 response to oxygen levels BP 7.339e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
FLIGHT TAGESB plate6 ROOTS		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 0.751 -0.519
2 249197_at AT5G42380 CML37, calmodulin like 37 0.710 -0.059
3 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.661 -0.904
4 247789_at AT5G58680 [ARM repeat superfamily protein] 0.554 0.322
5 248322_at AT5G52760 [Copper transport protein family] 0.477 -1.124
6 245755_at AT1G35210 unknown 0.453 -0.882
7 253632_at AT4G30430 TET9, tetraspanin9 0.445 0.053
8 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.443 -0.520
9 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.441 0.378
10 260744_at AT1G15010 unknown 0.425 -0.100
11 245346_at AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 0.421 -1.436
12 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.399 0.416
13 260227_at AT1G74450 unknown 0.390 -0.189
14 245119_at AT2G41640 [Glycosyltransferase family 61 protein] 0.384 -0.374
15 260135_at AT1G66400 CML23, calmodulin like 23 0.373 -0.559
16 251774_at AT3G55840 [Hs1pro-1 protein] 0.370 -0.237
17 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.366 -0.408
18 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.362 0.162
19 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.350 -0.165
20 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b 0.348 -0.441
21 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.341 0.504
22 260581_at AT2G47190 ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, myb domain protein 2 0.338 0.031
23 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.337 -0.836
24 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.333 0.212
25 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.333 -0.848
26 255844_at AT2G33580 LYK5, LysM-containing receptor-like kinase 5 0.323 -0.362
27 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.322 -0.506
28 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.316 0.215
29 248821_at AT5G47070 [Protein kinase superfamily protein] 0.312 -0.055
30 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.309 -0.907
31 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.305 -0.369
32 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.297 0.605
33 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 0.296 -0.162
34 261443_at AT1G28480 GRX480, roxy19 0.292 0.082
35 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.292 0.416
36 263576_at AT2G17080 unknown 0.291 -0.639
37 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] 0.290 0.259
38 251336_at AT3G61190 BAP1, BON association protein 1 0.285 -0.441
39 252193_at AT3G50060 MYB77, myb domain protein 77 0.284 -0.077
40 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.282 -0.399
41 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.280 -0.668
42 249746_at AT5G24590 ANAC091, Arabidopsis NAC domain containing protein 91, TIP, TCV-interacting protein 0.278 0.465
43 266037_at AT2G05940 RIPK, RPM1-induced protein kinase 0.276 1.072
44 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.274 -0.126
45 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.273 -0.232
46 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.273 0.469
47 265732_at AT2G01300 unknown 0.272 -0.594
48 247913_at AT5G57510 unknown 0.272 -0.953
49 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.271 0.466
50 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.271 -1.057
51 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.271 1.130
52 246018_at AT5G10695 unknown 0.268 -0.417
53 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 -0.411 -0.353
54 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -0.383 0.054
55 261157_at AT1G34510 [Peroxidase superfamily protein] -0.373 -0.024
56 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.306 0.259
57 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.296 0.348
58 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 -0.278 -0.878
59 247797_at AT5G58780 AtcPT5, AtHEPS, cPT5, cis -prenyltransferase 5, HEPS, heptaprenyl diphosphate synthase -0.275 -1.221
60 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.251 0.757
61 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.227 0.875
62 246872_at AT5G26080 [proline-rich family protein] -0.223 -0.712
63 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.214 -1.041
64 256097_at AT1G13670 unknown -0.203 -0.024
65 255140_x_at AT4G08410 [Proline-rich extensin-like family protein] -0.200 -0.432
66 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.198 -1.326
67 255111_at AT4G08780 [Peroxidase superfamily protein] -0.192 -0.928
68 248977_at AT5G45020 [Glutathione S-transferase family protein] -0.190 -0.175
69 252882_at AT4G39675 unknown -0.189 0.968
70 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 -0.189 -0.131
71 253298_at AT4G33560 [Wound-responsive family protein] -0.185 0.411
72 253880_at AT4G27590 [Heavy metal transport/detoxification superfamily protein ] -0.181 -0.619
73 248286_at AT5G52870 MAKR5, MEMBRANE-ASSOCIATED KINASE REGULATOR 5 -0.178 -0.716
74 252232_at AT3G49760 AtbZIP5, basic leucine-zipper 5, bZIP5, basic leucine-zipper 5 -0.177 0.190
75 251335_at AT3G61400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.176 -0.351
76 250640_at AT5G07150 [Leucine-rich repeat protein kinase family protein] -0.175 -0.755
77 258349_at AT3G17609 HYH, HY5-homolog -0.171 0.004
78 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.171 0.492
79 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -0.169 -1.301
80 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.169 0.231
81 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J -0.166 -0.094
82 266273_at AT2G29410 ATMTPB1, MTPB1, metal tolerance protein B1 -0.165 -1.077
83 252010_at AT3G52740 unknown -0.165 0.368
84 254240_at AT4G23496 SP1L5, SPIRAL1-like5 -0.162 -0.527
85 261247_at AT1G20070 unknown -0.161 -0.094
86 249138_at AT5G43070 WPP1, WPP domain protein 1 -0.161 -0.055
87 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.160 0.950
88 251727_at AT3G56290 unknown -0.157 0.304
89 251293_at AT3G61930 unknown -0.152 -0.995
90 258770_at AT3G10820 [Transcription elongation factor (TFIIS) family protein] -0.147 -1.264
91 245126_at AT2G47460 ATMYB12, MYB DOMAIN PROTEIN 12, MYB12, myb domain protein 12, PFG1, PRODUCTION OF FLAVONOL GLYCOSIDES 1 -0.146 -0.483
92 262590_at AT1G15100 RHA2A, RING-H2 finger A2A -0.144 -0.075
93 247807_at AT5G58360 ATOFP3, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, OFP3, ovate family protein 3 -0.143 -1.170
94 253513_at AT4G31760 [Peroxidase superfamily protein] -0.143 1.074
95 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.143 -0.341
96 261491_at AT1G14350 AtMYB124, myb domain protein 124, FLP, FOUR LIPS, MYB124 -0.142 -0.194
97 262322_at AT1G27590 unknown -0.141 -0.604
98 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H -0.140 0.111
99 259320_at AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 -0.138 -0.168
100 255745_at AT1G32030 [FUNCTIONS IN: DNA binding] -0.138 -1.091
101 248537_at AT5G50100 [Putative thiol-disulphide oxidoreductase DCC] -0.136 -0.532
102 245171_at AT2G47560 [RING/U-box superfamily protein] -0.131 -0.442
103 247473_at AT5G62260 AHL6, AT-hook motif nuclear localized protein 6 -0.130 -0.231