4.0:Information of module
hira-root
In comparison with gun1gun5 far-red pretreated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044085 cellular component biogenesis BP 2.641e-06
GO:0006084 acetyl-CoA metabolic process BP 3.612e-06
GO:0006637 acyl-CoA metabolic process BP 5.434e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010243 response to organonitrogen compound BP 5.168e-08
GO:0010200 response to chitin BP 8.777e-08
GO:1901700 response to oxygen-containing compound BP 5.010e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
hira-root		 Log2 signal ratio
gun1gun5 far-red pretreated
1 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 1.165 -0.007
2 248178_at AT5G54370 [Late embryogenesis abundant (LEA) protein-related] 1.061 0.030
3 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.960 0.010
4 265049_at AT1G52060 [Mannose-binding lectin superfamily protein] 0.953 0.017
5 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.793 0.048
6 260558_at AT2G43600 [Chitinase family protein] 0.783 0.042
7 266066_at AT2G18800 ATXTH21, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21, XTH21, xyloglucan endotransglucosylase/hydrolase 21 0.687 0.011
8 245245_at AT1G44318 hemb2 0.666 0.080
9 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.660 -0.049
10 253914_at AT4G27400 [Late embryogenesis abundant (LEA) protein-related] 0.630 -0.062
11 265131_at AT1G23760 JP630, PG3, POLYGALACTURONASE 3 0.602 0.082
12 245410_at AT4G17220 ATMAP70-5, microtubule-associated proteins 70-5, MAP70-5, microtubule-associated proteins 70-5 0.599 -0.035
13 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.532 0.007
14 262795_at AT1G13130 [Cellulase (glycosyl hydrolase family 5) protein] 0.529 0.027
15 251107_at AT5G01610 unknown 0.507 0.125
16 252302_at AT3G49190 [O-acyltransferase (WSD1-like) family protein] 0.505 0.005
17 246911_at AT5G25810 tny, TINY 0.498 0.042
18 250734_at AT5G06270 unknown 0.468 0.006
19 249031_at AT5G44900 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.463 0.034
20 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] 0.452 0.253
21 250479_at AT5G10260 AtRABH1e, RAB GTPase homolog H1E, RABH1e, RAB GTPase homolog H1E 0.427 -0.042
22 265884_at AT2G42320 [nucleolar protein gar2-related] 0.422 0.064
23 259026_at AT3G09240 BSK9, brassinosteroid-signaling kinase 9 0.410 0.046
24 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.409 0.025
25 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.402 0.030
26 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 0.394 0.100
27 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] 0.386 0.042
28 245568_at AT4G14650 unknown 0.382 0.026
29 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] 0.374 0.066
30 254876_at AT4G11610 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.371 0.058
31 253734_at AT4G29180 RHS16, root hair specific 16 0.362 0.007
32 260242_at AT1G63650 AtEGL3, ATMYC-2, EGL1, EGL3, ENHANCER OF GLABRA 3 0.359 0.071
33 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 0.355 -0.148
34 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.350 0.034
35 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.346 -0.027
36 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H 0.340 0.037
37 255558_at AT4G01900 GLB1, GLNB1 homolog, PII 0.339 0.020
38 245309_at AT4G15140 unknown 0.338 0.049
39 264315_at AT1G70370 PG2, polygalacturonase 2 0.338 0.060
40 262972_at AT1G75620 [glyoxal oxidase-related protein] 0.336 0.020
41 265103_at AT1G31070 GlcNAc1pUT1, N-acetylglucosamine-1-phosphate uridylyltransferase 1 0.328 -0.012
42 261877_at AT1G50580 [UDP-Glycosyltransferase superfamily protein] 0.326 0.037
43 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 0.323 0.106
44 267037_at AT2G38320 TBL34, TRICHOME BIREFRINGENCE-LIKE 34 0.314 0.092
45 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.314 0.072
46 254494_at AT4G20050 QRT3, QUARTET 3 0.313 0.011
47 258035_at AT3G21180 ACA9, autoinhibited Ca(2+)-ATPase 9, ATACA9 0.310 0.112
48 265967_at AT2G37450 UMAMIT13, Usually multiple acids move in and out Transporters 13 0.307 0.165
49 246378_at AT1G57620 CYB, CYTOPLASMIC BODIES 0.307 0.023
50 264426_at AT1G61760 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.305 0.006
51 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.301 0.101
52 248511_at AT5G50375 CPI1, cyclopropyl isomerase 0.300 0.033
53 265688_at AT2G24300 [Calmodulin-binding protein] 0.300 0.002
54 261025_at AT1G01225 [NC domain-containing protein-related] 0.299 0.100
55 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.294 0.107
56 253618_at AT4G30420 UMAMIT34, Usually multiple acids move in and out Transporters 34 0.287 0.071
57 256334_at AT1G72125 AtNPF5.13, NPF5.13, NRT1/ PTR family 5.13 0.282 0.040
58 255432_at AT4G03330 ATSYP123, SYP123, syntaxin of plants 123 0.275 -0.038
59 259053_at AT3G03320 [RNA-binding ASCH domain protein] 0.273 -0.166
60 253256_at AT4G34360 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.272 0.010
61 245676_at AT1G56670 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.269 0.007
62 261710_at AT1G32730 unknown 0.269 0.026
63 265431_at AT2G20680 AtMAN2, MAN2, endo-beta-mannase 2 0.268 0.014
64 265954_at AT2G37260 ATWRKY44, DSL1, DR. STRANGELOVE 1, TTG2, TRANSPARENT TESTA GLABRA 2, WRKY44 0.267 0.049
65 265820_at AT2G17940 unknown 0.265 -0.008
66 267606_at AT2G26640 KCS11, 3-ketoacyl-CoA synthase 11 0.263 0.136
67 259172_at AT3G03630 CS26, cysteine synthase 26 0.261 0.114
68 266787_at AT2G28990 [Leucine-rich repeat protein kinase family protein] 0.261 -0.046
69 251875_at AT3G54270 [sucrose-6F-phosphate phosphohydrolase family protein] 0.260 0.030
70 255003_at AT4G09950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.256 0.014
71 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.256 -0.034
72 252989_at AT4G38420 sks9, SKU5 similar 9 -1.308 -0.439
73 245567_at AT4G14630 GLP9, germin-like protein 9 -1.188 0.012
74 262719_at AT1G43590 unknown -1.074 0.246
75 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 -0.958 -0.386
76 248322_at AT5G52760 [Copper transport protein family] -0.941 -0.035
77 249438_at AT5G40010 AATP1, AAA-ATPase 1, ASD, ATPase-in-Seed-Development -0.929 -0.063
78 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.911 0.032
79 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.833 -0.368
80 265922_at AT2G18480 [Major facilitator superfamily protein] -0.704 0.023
81 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] -0.693 -0.008
82 260744_at AT1G15010 unknown -0.639 -0.423
83 254200_at AT4G24110 unknown -0.627 -0.382
84 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] -0.619 0.158
85 250415_at AT5G11210 ATGLR2.5, ARABIDOPSIS THALIANA GLU, GLR2.5, glutamate receptor 2.5 -0.604 -0.058
86 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.593 -0.201
87 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 -0.592 -0.268
88 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.568 0.379
89 253044_at AT4G37290 unknown -0.558 -0.049
90 260706_at AT1G32350 AOX1D, alternative oxidase 1D -0.556 -0.287
91 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.524 -0.089
92 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.501 -0.048
93 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 -0.493 -0.196
94 256149_at AT1G55110 AtIDD7, indeterminate(ID)-domain 7, IDD7, indeterminate(ID)-domain 7 -0.482 0.031
95 257184_at AT3G13090 ABCC6, ATP-binding cassette C6, ATMRP8, multidrug resistance-associated protein 8, MRP8, multidrug resistance-associated protein 8 -0.469 0.042
96 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 -0.461 -0.088
97 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.453 -0.253
98 254069_at AT4G25434 ATNUDT10, nudix hydrolase homolog 10, NUDT10, nudix hydrolase homolog 10 -0.449 0.067
99 256442_at AT3G10930 unknown -0.431 -0.471
100 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -0.428 -0.330
101 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.416 -0.056
102 255521_at AT4G02280 ATSUS3, SUS3, sucrose synthase 3 -0.411 -0.307
103 267472_at AT2G02850 ARPN, plantacyanin -0.409 -0.282
104 266082_at AT2G37830 [pseudogene] -0.401 0.057
105 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 -0.396 0.058
106 253796_at AT4G28460 unknown -0.389 -0.096
107 249889_at AT5G22540 unknown -0.370 0.022
108 261380_at AT1G05400 unknown -0.370 0.021
109 246104_at AT5G28650 ATWRKY74, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY74, WRKY DNA-binding protein 74 -0.368 0.043
110 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 -0.367 -0.159
111 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.362 -0.251
112 261028_at AT1G26620 unknown -0.350 0.039
113 264191_at AT1G54730 [Major facilitator superfamily protein] -0.346 0.093
114 250287_at AT5G13330 Rap2.6L, related to AP2 6l -0.337 -0.119
115 248495_at AT5G50780 [Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein] -0.326 -0.118
116 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 -0.322 -0.055
117 250279_at AT5G13200 [GRAM domain family protein] -0.315 -0.477
118 253832_at AT4G27654 unknown -0.302 0.019
119 261531_at AT1G63490 [transcription factor jumonji (jmjC) domain-containing protein] -0.301 0.052
120 246417_at AT5G16990 [Zinc-binding dehydrogenase family protein] -0.295 -0.052
121 248821_at AT5G47070 [Protein kinase superfamily protein] -0.294 -0.385
122 251722_at AT3G56200 [Transmembrane amino acid transporter family protein] -0.289 -0.226
123 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.283 0.163
124 259081_at AT3G05030 ATNHX2, NHX2, sodium hydrogen exchanger 2 -0.281 -0.056
125 256366_at AT1G66880 [Protein kinase superfamily protein] -0.281 -0.043
126 252470_at AT3G46930 [Protein kinase superfamily protein] -0.278 -0.219
127 257847_at AT3G13020 [hAT transposon superfamily protein] -0.277 0.005
128 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 -0.267 -0.229
129 254410_at AT4G21410 CRK29, cysteine-rich RLK (RECEPTOR-like protein kinase) 29 -0.263 0.050
130 247426_at AT5G62570 CBP60a, calmodulin-binding protein 60a -0.263 0.028
131 259919_at AT1G72560 PSD, PAUSED -0.260 0.094
132 267132_at AT2G23420 NAPRT2, nicotinate phosphoribosyltransferase 2 -0.259 0.075
133 266440_at AT2G43235 unknown -0.258 -0.011
134 248008_at AT5G56270 ATWRKY2, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY2, WRKY DNA-binding protein 2 -0.258 0.021
135 256806_at AT3G20910 NF-YA9, nuclear factor Y, subunit A9 -0.253 -0.065
136 258275_at AT3G15760 unknown -0.252 0.124
137 254917_at AT4G11350 unknown -0.249 -0.046
138 261470_at AT1G28370 ATERF11, ERF DOMAIN PROTEIN 11, ERF11, ERF domain protein 11 -0.247 -0.071
139 247775_at AT5G58690 ATPLC5, PLC5, phosphatidylinositol-speciwc phospholipase C5 -0.241 -0.003
140 248416_at AT5G51630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.240 -0.166
141 259283_at AT3G11440 ATMYB65, MYB DOMAIN PROTEIN 65, MYB65, myb domain protein 65 -0.238 -0.042