4.0:Information of module
gis5 seedlings
In comparison with gis5 seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901698 response to nitrogen compound BP 1.673e-09
GO:0050896 response to stimulus BP 1.973e-09
GO:0006950 response to stress BP 1.067e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 1.080e-06
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 1.160e-06
GO:0044272 sulfur compound biosynthetic process BP 1.224e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
gis5 seedlings		 Log2 signal ratio
gis5 seedlings
1 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.896 0.896
2 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.804 0.804
3 246531_at AT5G15800 AGL2, AGAMOUS-like 2, SEP1, SEPALLATA1 0.718 0.718
4 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.663 0.663
5 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 0.614 0.614
6 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 0.593 0.593
7 248496_at AT5G50790 AtSWEET10, SWEET10 0.576 0.576
8 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.538 0.538
9 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.536 0.536
10 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.526 0.526
11 259124_at AT3G02310 AGL4, AGAMOUS-like 4, SEP2, SEPALLATA 2 0.499 0.499
12 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.499 0.499
13 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.496 0.496
14 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.492 0.492
15 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.400 0.400
16 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.385 0.385
17 252539_at AT3G45730 unknown 0.373 0.373
18 264958_at AT1G76960 unknown 0.372 0.372
19 264830_at AT1G03710 [Cystatin/monellin superfamily protein] 0.372 0.372
20 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.371 0.371
21 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.371 0.371
22 250472_at AT5G10210 unknown 0.364 0.364
23 246132_at AT5G20850 ATRAD51, RAD51 0.356 0.356
24 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.351 0.351
25 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.324 0.324
26 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.298 0.298
27 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.297 0.297
28 264635_at AT1G65500 unknown 0.295 0.295
29 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.293 0.293
30 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.293 0.293
31 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.292 0.292
32 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.288 0.288
33 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER 0.288 0.288
34 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.283 0.283
35 249848_at AT5G23220 NIC3, nicotinamidase 3 0.280 0.280
36 256188_at AT1G30160 unknown 0.272 0.272
37 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.267 0.267
38 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.265 0.265
39 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 0.265 0.265
40 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.264 0.264
41 259481_at AT1G18970 GLP4, germin-like protein 4 0.259 0.259
42 254130_at AT4G24540 AGL24, AGAMOUS-like 24 0.259 0.259
43 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.258 0.258
44 245903_at AT5G11100 ATSYTD, NTMC2T2.2, NTMC2TYPE2.2, SYT4, synaptotagmin 4, SYTD 0.258 0.258
45 250914_at AT5G03780 TRFL10, TRF-like 10 0.258 0.258
46 263515_at AT2G21640 unknown 0.255 0.255
47 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.248 0.248
48 260568_at AT2G43570 CHI, chitinase, putative 0.245 0.245
49 253757_at AT4G28950 ARAC7, Arabidopsis RAC-like 7, ATRAC7, ATROP9, RAC7, ROP9, RHO-related protein from plants 9 0.242 0.242
50 263228_at AT1G30700 [FAD-binding Berberine family protein] 0.237 0.237
51 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.237 0.237
52 254673_at AT4G18430 AtRABA1e, RAB GTPase homolog A1E, RABA1e, RAB GTPase homolog A1E 0.235 0.235
53 258242_at AT3G27640 [Transducin/WD40 repeat-like superfamily protein] 0.230 0.230
54 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.230 0.230
55 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.223 0.223
56 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.223 0.223
57 262106_at AT1G02970 ATWEE1, WEE1, WEE1 kinase homolog 0.221 0.221
58 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.218 0.218
59 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 0.217 0.217
60 249129_at AT5G43080 CYCA3;1, Cyclin A3;1 0.217 0.217
61 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.459 -0.459
62 250298_at AT5G11860 SSP5, SCP1-like small phosphatase 5 -0.423 -0.423
63 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.384 -0.384
64 259352_at AT3G05170 [Phosphoglycerate mutase family protein] -0.359 -0.359
65 246567_at AT5G14950 ATGMII, GMII, golgi alpha-mannosidase II -0.337 -0.337
66 256577_at AT3G28220 [TRAF-like family protein] -0.274 -0.274
67 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.269 -0.269
68 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 -0.253 -0.253
69 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.246 -0.246
70 248509_at AT5G50335 unknown -0.244 -0.244
71 256324_at AT1G66760 [MATE efflux family protein] -0.242 -0.242
72 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D -0.231 -0.231
73 249559_at AT5G38320 unknown -0.221 -0.221
74 255285_at AT4G04630 unknown -0.215 -0.215
75 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.210 -0.210
76 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 -0.204 -0.204
77 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] -0.198 -0.198
78 257057_at AT3G15310 unknown -0.195 -0.195
79 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.187 -0.187
80 248239_at AT5G53920 [ribosomal protein L11 methyltransferase-related] -0.177 -0.177
81 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.176 -0.176
82 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.173 -0.173
83 256619_at AT3G24460 [Serinc-domain containing serine and sphingolipid biosynthesis protein] -0.166 -0.166
84 263887_at AT2G36980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.166 -0.166
85 266600_at AT2G46070 ATMPK12, MAPK12, MPK12, mitogen-activated protein kinase 12 -0.165 -0.165
86 261350_at AT1G79770 unknown -0.164 -0.164
87 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 -0.163 -0.163
88 265863_at AT2G01770 ATVIT1, VIT1, vacuolar iron transporter 1 -0.161 -0.161
89 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.160 -0.160
90 261798_at AT1G30460 ATCPSF30, ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, CPSF30, cleavage and polyadenylation specificity factor 30 -0.160 -0.160
91 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.159 -0.159
92 258592_at AT3G04130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.155 -0.155
93 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.154 -0.154
94 253285_at AT4G34250 KCS16, 3-ketoacyl-CoA synthase 16 -0.152 -0.152
95 264731_at AT1G62150 [Mitochondrial transcription termination factor family protein] -0.150 -0.150
96 248394_at AT5G52070 [Agenet domain-containing protein] -0.149 -0.149
97 266866_at AT2G29940 ABCG31, ATP-binding cassette G31, ATPDR3, PLEIOTROPIC DRUG RESISTANCE 3, PDR3, pleiotropic drug resistance 3 -0.149 -0.149
98 259641_at AT1G69020 [Prolyl oligopeptidase family protein] -0.148 -0.148
99 257012_at AT3G26120 terminal EAR1-like 1 -0.146 -0.146
100 249736_at AT5G24460 unknown -0.144 -0.144
101 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.143 -0.143
102 259797_at AT1G64410 unknown -0.142 -0.142
103 248342_at AT5G52230 MBD13, methyl-CPG-binding domain protein 13 -0.141 -0.141
104 248789_at AT5G47440 unknown -0.141 -0.141
105 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] -0.140 -0.140
106 247023_at AT5G67060 HEC1, HECATE 1 -0.140 -0.140
107 262108_at AT1G02740 [MRG family protein] -0.137 -0.137
108 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.137 -0.137
109 249946_at AT5G19170 unknown -0.136 -0.136
110 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] -0.133 -0.133
111 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 -0.133 -0.133
112 257358_at AT2G40990 [DHHC-type zinc finger family protein] -0.133 -0.133
113 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.133 -0.133
114 246670_at AT5G30520 unknown -0.132 -0.132
115 258283_at AT3G26750 unknown -0.132 -0.132
116 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.131 -0.131
117 248210_at AT5G54000 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.130 -0.130
118 261546_at AT1G63520 unknown -0.130 -0.130
119 257423_at AT1G62010 [Mitochondrial transcription termination factor family protein] -0.128 -0.128