4.0:Information of module
BAM8-Cat Ox untreated
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006869 lipid transport BP 5.585e-05
GO:0010876 lipid localization BP 1.268e-03
GO:0010035 response to inorganic substance BP 1.675e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046271 phenylpropanoid catabolic process BP 1.229e-03
GO:0046274 lignin catabolic process BP 1.229e-03
GO:0043473 pigmentation BP 1.897e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
BAM8-Cat Ox untreated		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.891 0.097
2 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 0.647 0.088
3 245171_at AT2G47560 [RING/U-box superfamily protein] 0.546 0.067
4 247882_at AT5G57785 unknown 0.536 0.033
5 248997_at AT5G45300 BAM8, BETA-AMYLASE 8, BMY2, beta-amylase 2 0.530 0.004
6 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.443 0.056
7 255943_at AT1G22370 AtUGT85A5, UDP-glucosyl transferase 85A5, UGT85A5, UDP-glucosyl transferase 85A5 0.393 0.030
8 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.293 -0.015
9 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 0.270 -0.015
10 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 0.264 -0.074
11 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] 0.244 0.006
12 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.236 0.060
13 246235_at AT4G36830 HOS3-1 0.228 -0.035
14 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] 0.222 -0.031
15 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 0.220 0.018
16 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL 0.212 -0.020
17 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] 0.210 0.022
18 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 0.186 0.019
19 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.178 -0.013
20 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN 0.175 0.028
21 254186_at AT4G24010 ATCSLG1, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, CSLG1, cellulose synthase like G1 0.174 -0.084
22 247105_at AT5G66630 DAR5, DA1-related protein 5 0.174 0.004
23 252606_at AT3G45010 scpl48, serine carboxypeptidase-like 48 -1.100 0.013
24 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.604 0.007
25 252446_at AT3G47010 [Glycosyl hydrolase family protein] -0.218 -0.004
26 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.202 -0.067
27 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 -0.178 0.063
28 260021_at AT1G30010 nMAT1, nuclear maturase 1 -0.168 0.042
29 251350_at AT3G61040 CYP76C7, cytochrome P450, family 76, subfamily C, polypeptide 7 -0.167 0.004
30 249261_at AT5G41710 [Mutator-like transposase family, has a 6.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.166 0.049
31 263845_at AT2G37040 ATPAL1, PAL1, PHE ammonia lyase 1 -0.164 -0.023
32 257524_at AT3G01330 DEL3, DP-E2F-like protein 3, E2FF, E2L2, E2F-LIKE 2 -0.153 0.005
33 250622_at AT5G07310 [Integrase-type DNA-binding superfamily protein] -0.147 0.019
34 257479_at AT1G16150 WAKL4, wall associated kinase-like 4 -0.142 0.055
35 265405_at AT2G16750 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.139 0.002
36 256896_at AT3G24630 TRM34, TON1 Recruiting Motif 34 -0.138 -0.049
37 256871_at AT3G26480 [Transducin family protein / WD-40 repeat family protein] -0.129 0.028
38 258905_at AT3G06390 [Uncharacterised protein family (UPF0497)] -0.127 0.023
39 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.126 0.048
40 260688_at AT1G17665 unknown -0.126 0.100
41 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 -0.125 -0.046
42 253472_at AT4G32230 unknown -0.125 0.002
43 255900_at AT1G17830 unknown -0.124 -0.028