4.0:Information of module
BAM7-N Ox untreated
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009817 defense response to fungus, incompatible... BP 2.213e-04
GO:0050896 response to stimulus BP 5.073e-04
GO:0006950 response to stress BP 1.389e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 1.353e-06
GO:0042430 indole-containing compound metabolic pro... BP 1.397e-06
GO:0016143 S-glycoside metabolic process BP 3.390e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
BAM7-N Ox untreated		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.713 -0.711
2 247882_at AT5G57785 unknown 0.666 0.028
3 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] 0.595 0.230
4 247573_at AT5G61160 AACT1, anthocyanin 5-aromatic acyltransferase 1 0.570 -0.169
5 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.556 0.272
6 246228_at AT4G36430 [Peroxidase superfamily protein] 0.528 0.219
7 245076_at AT2G23170 GH3.3 0.432 -0.319
8 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.413 -0.663
9 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.402 0.564
10 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.358 -0.219
11 252993_at AT4G38540 [FAD/NAD(P)-binding oxidoreductase family protein] 0.331 1.036
12 253277_at AT4G34230 ATCAD5, cinnamyl alcohol dehydrogenase 5, CAD-5, cinnamyl alcohol dehydrogenase 5, CAD5, cinnamyl alcohol dehydrogenase 5 0.330 -0.571
13 266106_at AT2G45170 ATATG8E, AUTOPHAGY 8E, ATG8E, AUTOPHAGY 8E 0.328 0.362
14 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A 0.304 -0.512
15 245635_at AT1G25250 AtIDD16, indeterminate(ID)-domain 16, IDD16, indeterminate(ID)-domain 16 0.299 -0.533
16 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.295 0.440
17 256789_at AT3G13672 SINA2 0.286 0.164
18 259009_at AT3G09260 BGLU23, LEB, LONG ER BODY, PSR3.1, PYK10 0.285 0.519
19 264635_at AT1G65500 unknown 0.274 0.205
20 260034_at AT1G68810 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.272 -0.106
21 247691_at AT5G59720 HSP18.2, heat shock protein 18.2 0.258 -0.572
22 263485_at AT2G29890 ATVLN1, VLN1, villin 1 0.252 -0.137
23 267429_at AT2G34850 MEE25, maternal effect embryo arrest 25 0.247 -0.512
24 262388_at AT1G49320 unknown 0.246 -0.372
25 260560_at AT2G43590 [Chitinase family protein] 0.242 0.177
26 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.234 0.035
27 264271_at AT1G60270 BGLU6, beta glucosidase 6 0.230 -0.728
28 247776_at AT5G58700 ATPLC4, PLC4, phosphatidylinositol-speciwc phospholipase C4 0.230 0.100
29 260262_at AT1G68470 [Exostosin family protein] 0.223 0.288
30 261336_at AT1G44790 [ChaC-like family protein] 0.221 0.189
31 256285_at AT3G12510 [MADS-box family protein] 0.215 0.890
32 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 0.215 0.730
33 251062_at AT5G01840 ATOFP1, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, OFP1, ovate family protein 1 0.213 -0.647
34 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.204 0.390
35 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 0.203 0.756
36 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] 0.197 -1.257
37 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] 0.187 0.653
38 257174_at AT3G27190 UKL2, uridine kinase-like 2 0.177 1.311
39 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.177 0.753
40 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.173 -0.231
41 253322_at AT4G33980 unknown 0.172 -1.349
42 266778_at AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 0.171 0.997
43 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 0.167 0.334
44 247175_at AT5G65280 GCL1, GCR2-like 1 0.166 0.053
45 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 0.165 0.457
46 247880_at AT5G57780 P1R1, P1R1 0.164 -0.969
47 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.438 -0.969
48 265118_at AT1G62660 [Glycosyl hydrolases family 32 protein] -0.424 0.569
49 259680_at AT1G77690 LAX3, like AUX1 3 -0.412 0.283
50 250435_at AT5G10380 ATRING1, RING1 -0.398 -0.571
51 252136_at AT3G50770 CML41, calmodulin-like 41 -0.330 -0.759
52 259766_at AT1G64360 unknown -0.314 -1.025
53 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.306 -0.565
54 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A -0.294 1.319
55 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.292 1.038
56 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B -0.283 -0.363
57 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.281 0.459
58 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 -0.281 -0.741
59 250277_at AT5G12940 [Leucine-rich repeat (LRR) family protein] -0.253 0.194
60 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] -0.250 -0.377
61 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 -0.241 -0.195
62 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.228 -0.882
63 261425_at AT1G18880 AtNPF2.9, NPF2.9, NRT1/ PTR family 2.9, NRT1.9, nitrate transporter 1.9 -0.219 -0.555
64 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 -0.218 -0.897
65 262465_at AT1G50270 [Pentatricopeptide repeat (PPR) superfamily protein] -0.200 0.290
66 257406_at AT1G27060 [Regulator of chromosome condensation (RCC1) family protein] -0.200 -0.441
67 266914_at AT2G45880 BAM7, beta-amylase 7, BMY4, BETA-AMYLASE 4 -0.200 -0.615
68 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.200 0.247
69 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.195 0.725
70 263384_at AT2G40130 SMXL8, SMAX1-like 8 -0.194 -1.148
71 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.191 0.848
72 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.180 -0.993
73 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.176 -0.386
74 260385_at AT1G74090 ATSOT18, DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18, ATST5B, ARABIDOPSIS SULFOTRANSFERASE 5B, SOT18, desulfo-glucosinolate sulfotransferase 18 -0.169 0.129
75 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.169 0.535
76 259728_at AT1G60970 [SNARE-like superfamily protein] -0.165 -0.032
77 261580_at AT1G01110 IQD18, IQ-domain 18 -0.159 0.645
78 258932_at AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -0.159 -0.167
79 256527_at AT1G66100 [Plant thionin] -0.158 -1.454
80 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.152 0.184
81 261094_at AT1G62920 unknown -0.150 -0.816
82 266736_at AT2G46960 CYP709B1, cytochrome P450, family 709, subfamily B, polypeptide 1 -0.145 -0.718
83 255627_at AT4G00955 unknown -0.142 0.120
84 249771_at AT5G24080 [Protein kinase superfamily protein] -0.141 -0.269
85 246608_at AT5G35380 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.141 -0.279
86 256048_at AT1G07025 [Mitochondrial substrate carrier family protein] -0.140 -0.562
87 256847_at AT3G27950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.140 -0.440
88 252594_at AT3G45680 [Major facilitator superfamily protein] -0.136 -0.407
89 258591_at AT3G04360 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.136 -1.282
90 250699_at AT5G06820 SRF2, STRUBBELIG-receptor family 2 -0.136 -0.083
91 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.136 0.593