4.0:Information of module
BAM7 Ox untreated
In comparison with bam7 bam8 untreated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0051567 histone H3-K9 methylation BP 3.022e-04
GO:0061647 histone H3-K9 modification BP 3.022e-04
GO:0044707 single-multicellular organism process BP 7.123e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015996 chlorophyll catabolic process BP 2.657e-03
GO:0046149 pigment catabolic process BP 2.976e-03
GO:0006787 porphyrin-containing compound catabolic ... BP 3.324e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
BAM7 Ox untreated		 Log2 signal ratio
bam7 bam8 untreated
1 266914_at AT2G45880 BAM7, beta-amylase 7, BMY4, BETA-AMYLASE 4 0.577 0.100
2 260146_at AT1G52770 [Phototropic-responsive NPH3 family protein] 0.201 0.198
3 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.185 -0.017
4 258157_at AT3G18100 AtMYB4R1, myb domain protein 4R1, MYB4R1, myb domain protein 4r1 0.163 0.039
5 263485_at AT2G29890 ATVLN1, VLN1, villin 1 0.162 -0.010
6 245076_at AT2G23170 GH3.3 0.160 0.060
7 249464_at AT5G39710 EMB2745, EMBRYO DEFECTIVE 2745 0.153 0.027
8 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 0.147 0.121
9 247504_at AT5G61990 [Pentatricopeptide repeat (PPR) superfamily protein] 0.142 0.127
10 257725_at AT3G18524 ATMSH2, MSH2, MUTS homolog 2 0.140 0.055
11 256404_at AT3G06250 FRS7, FAR1-related sequence 7 0.133 0.053
12 247206_at AT5G64950 [Mitochondrial transcription termination factor family protein] 0.123 0.095
13 254054_at AT4G25320 AHL3, AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3 0.116 0.047
14 259973_at AT1G76630 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.116 0.095
15 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 0.113 0.033
16 261636_at AT1G50110 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.112 0.049
17 262415_at AT1G49400 emb1129, embryo defective 1129 0.106 0.072
18 254812_at AT4G12250 GAE5, UDP-D-glucuronate 4-epimerase 5 0.103 0.048
19 267613_at AT2G26700 PID2, PINOID2 0.102 0.030
20 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.100 -0.009
21 248841_at AT5G46740 UBP21, ubiquitin-specific protease 21 0.095 0.068
22 267004_at AT2G34260 WDR55, human WDR55 (WD40 repeat) homolog 0.094 0.005
23 250543_at AT5G08190 NF-YB12, nuclear factor Y, subunit B12 0.090 0.054
24 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 0.088 0.075
25 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.087 0.046
26 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.269 -0.088
27 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.249 -0.184
28 258932_at AT3G10150 ATPAP16, PAP16, purple acid phosphatase 16 -0.194 -0.041
29 247903_at AT5G57340 unknown -0.186 -0.049
30 265009_at AT1G24650 [Leucine-rich repeat protein kinase family protein] -0.175 -0.043
31 250699_at AT5G06820 SRF2, STRUBBELIG-receptor family 2 -0.173 -0.082
32 259377_at AT3G16380 PAB6, poly(A) binding protein 6 -0.172 -0.087
33 256408_at AT1G66610 [TRAF-like superfamily protein] -0.169 -0.080
34 247253_at AT5G64790 [O-Glycosyl hydrolases family 17 protein] -0.167 -0.028
35 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.163 -0.064
36 263977_at AT2G42660 [Homeodomain-like superfamily protein] -0.158 -0.120
37 250937_at AT5G03230 unknown -0.155 -0.042
38 259946_at AT1G71450 [Integrase-type DNA-binding superfamily protein] -0.151 -0.096
39 262049_at AT1G80180 unknown -0.151 -0.029
40 257837_at AT3G25200 unknown -0.146 -0.074
41 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] -0.145 -0.069
42 250271_at AT5G12990 CLE40, CLAVATA3/ESR-RELATED 40 -0.138 0.013
43 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.138 -0.046
44 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER -0.131 -0.112
45 265645_at AT2G27370 CASP3, Casparian strip membrane domain protein 3 -0.127 -0.040
46 254989_at AT4G10690 [copia-like retrotransposon family, has a 1.5e-256 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.126 -0.065
47 257683_at AT3G13280 [Putative endonuclease or glycosyl hydrolase] -0.125 -0.077
48 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.124 0.146
49 257479_at AT1G16150 WAKL4, wall associated kinase-like 4 -0.122 -0.131