4.0:Information of module
rpoTmp(line) untreated
In comparison with aox1a:rpoTmp untreated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009648 photoperiodism BP 9.817e-10
GO:0048573 photoperiodism, flowering BP 7.271e-09
GO:0010228 vegetative to reproductive phase transit... BP 2.254e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 1.315e-40
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 2.460e-40
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 1.539e-39
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rpoTmp(line) untreated		 Log2 signal ratio
aox1a:rpoTmp untreated
1 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER 1.024 -0.031
2 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.688 0.779
3 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 0.688 0.302
4 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.605 0.032
5 244931_at ATMG00630 ORF110B 0.588 0.200
6 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.530 0.040
7 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.525 0.386
8 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 0.494 0.173
9 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 0.494 0.145
10 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.462 -0.052
11 254660_at AT4G18250 [receptor serine/threonine kinase, putative] 0.414 0.612
12 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.411 -0.057
13 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.406 -0.004
14 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.405 0.717
15 257322_at ATMG01180 ORF111B 0.399 0.569
16 263515_at AT2G21640 unknown 0.391 0.891
17 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 0.389 -0.061
18 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 0.386 -0.143
19 256188_at AT1G30160 unknown 0.382 0.344
20 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] 0.367 -0.114
21 257334_at ATMG01370 ORF111D 0.354 0.617
22 257337_at ATMG00060 NAD5, NADH DEHYDROGENASE SUBUNIT 5, NAD5.3, NADH DEHYDROGENASE SUBUNIT 5.3, NAD5C, NADH dehydrogenase subunit 5C 0.351 0.089
23 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 0.326 0.267
24 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 0.311 0.454
25 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.306 0.006
26 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.302 0.619
27 244903_at ATMG00660 ORF149 0.285 0.252
28 256627_at AT3G19970 [alpha/beta-Hydrolases superfamily protein] 0.284 0.163
29 260522_x_at AT2G41730 unknown 0.284 0.788
30 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.276 0.392
31 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 0.267 0.417
32 248060_at AT5G55560 [Protein kinase superfamily protein] 0.266 0.222
33 258117_at AT3G14700 [SART-1 family] 0.263 0.329
34 257057_at AT3G15310 unknown 0.252 0.014
35 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 0.250 -0.153
36 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] 0.247 0.337
37 265902_at AT2G25590 [Plant Tudor-like protein] 0.244 0.159
38 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] 0.241 0.201
39 255596_at AT4G01720 AtWRKY47, WRKY47 0.240 0.007
40 257321_at ATMG01130 ORF106F 0.239 0.180
41 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 0.237 0.412
42 244921_s_at ATMG01000 ORF114 0.232 0.549
43 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL 0.228 0.043
44 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.226 0.263
45 262719_at AT1G43590 unknown 0.224 0.265
46 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.221 0.147
47 261586_at AT1G01640 [BTB/POZ domain-containing protein] 0.219 0.285
48 262359_at AT1G73066 [Leucine-rich repeat family protein] 0.219 -0.001
49 266984_at AT2G39570 ACR9, ACT domain repeats 9 0.217 0.118
50 266738_at AT2G47010 unknown 0.209 0.095
51 262902_x_at AT1G59930 [MADS-box family protein] 0.208 0.230
52 256803_at AT3G20960 CYP705A33, cytochrome P450, family 705, subfamily A, polypeptide 33 0.205 0.082
53 246951_at AT5G04880 [expressed protein] 0.204 0.170
54 245513_at AT4G15780 ATVAMP724, vesicle-associated membrane protein 724, VAMP724, vesicle-associated membrane protein 724 0.200 0.162
55 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.199 0.110
56 261404_at AT1G18690 XXT4, xyloglucan xylosyltransferase 4 0.198 0.053
57 249006_at AT5G44660 unknown 0.197 0.042
58 260420_at AT1G69610 [FUNCTIONS IN: structural constituent of ribosome] 0.190 0.055
59 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.189 0.108
60 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 0.187 0.058
61 266910_at AT2G45920 [U-box domain-containing protein] 0.185 0.083
62 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] 0.184 0.300
63 264929_at AT1G60730 [NAD(P)-linked oxidoreductase superfamily protein] 0.183 0.170
64 264538_at AT1G55600 ATWRKY10, MINI3, MINISEED 3, WRKY10, WRKY DNA-binding protein 10 0.182 -0.034
65 251302_at AT3G61970 NGA2, NGATHA2 0.182 -0.050
66 257401_at AT1G23550 SRO2, similar to RCD one 2 0.176 0.179
67 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.176 0.053
68 267460_at AT2G33810 SPL3, squamosa promoter binding protein-like 3 0.174 0.050
69 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 0.173 0.044
70 266860_at AT2G26870 NPC2, non-specific phospholipase C2 0.170 -0.127
71 245420_at AT4G17410 [DWNN domain, a CCHC-type zinc finger] 0.169 0.004
72 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.166 -0.085
73 261888_at AT1G80800 [pseudogene] 0.166 0.133
74 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.164 0.124
75 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.163 0.144
76 254899_at AT4G11490 CRK33, cysteine-rich RLK (RECEPTOR-like protein kinase) 33 0.163 0.019
77 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 0.162 0.203
78 246909_at AT5G25770 [alpha/beta-Hydrolases superfamily protein] 0.160 0.073
79 251987_at AT3G53280 CYP71B5, cytochrome p450 71b5 0.159 0.122
80 247760_at AT5G59130 [Subtilase family protein] 0.159 0.301
81 256919_at AT3G18970 MEF20, mitochondrial editing factor 20 0.158 0.061
82 258179_at AT3G21690 [MATE efflux family protein] 0.157 0.027
83 259902_at AT1G74170 AtRLP13, receptor like protein 13, RLP13, receptor like protein 13 0.157 0.069
84 259623_at AT1G42700 unknown 0.155 -0.046
85 262111_at AT1G02960 unknown 0.154 0.048
86 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.151 0.134
87 257333_at ATMG01360 COX1, cytochrome oxidase -0.535 -0.343
88 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.345 -0.065
89 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.268 -0.037
90 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 -0.243 -0.145
91 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.235 -0.101
92 261395_at AT1G79700 WRI4, WRINKLED 4 -0.232 -0.028
93 249895_at AT5G22500 FAR1, fatty acid reductase 1 -0.230 -0.388
94 254076_at AT4G25340 ATFKBP53, FKBP53, FK506 BINDING PROTEIN 53 -0.227 -0.128
95 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B -0.225 -0.238
96 253401_at AT4G32870 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.224 0.207
97 247878_at AT5G57760 unknown -0.220 -0.215
98 247922_at AT5G57500 [Galactosyltransferase family protein] -0.213 -0.106
99 258505_at AT3G06530 [ARM repeat superfamily protein] -0.210 0.005
100 257765_at AT3G23020 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.210 -0.103
101 248614_at AT5G49560 [Putative methyltransferase family protein] -0.208 -0.127
102 267004_at AT2G34260 WDR55, human WDR55 (WD40 repeat) homolog -0.207 0.028
103 257331_at ATMG01330 ORF107H -0.204 0.038
104 259087_at AT3G04980 [DNAJ heat shock N-terminal domain-containing protein] -0.195 -0.106
105 245228_at AT3G29810 COBL2, COBRA-like protein 2 precursor -0.194 0.112
106 265154_at AT1G30960 [GTP-binding family protein] -0.191 0.079
107 248862_at AT5G46730 [glycine-rich protein] -0.190 -0.045
108 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 -0.190 -0.040
109 250201_at AT5G14230 unknown -0.188 -0.019
110 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 -0.188 0.047
111 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.187 -0.014
112 267576_at AT2G30640 MUG2, MUSTANG 2 -0.186 -0.024
113 261301_at AT1G48570 [zinc finger (Ran-binding) family protein] -0.186 -0.098
114 262682_at AT1G75900 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.186 0.042
115 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 -0.185 0.003
116 265771_at AT2G48030 [DNAse I-like superfamily protein] -0.185 -0.154
117 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.185 -0.045
118 258367_at AT3G14370 WAG2 -0.183 -0.031
119 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.182 -0.093
120 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 -0.177 -0.075
121 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 -0.176 0.008
122 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A -0.176 -0.070
123 251538_at AT3G58660 [Ribosomal protein L1p/L10e family] -0.176 0.003
124 264066_at AT2G27880 AGO5, ARGONAUTE 5, AtAGO5 -0.175 -0.093
125 249046_at AT5G44400 [FAD-binding Berberine family protein] -0.172 -0.111
126 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 -0.172 0.149
127 250930_at AT5G03160 ATP58IPK, homolog of mamallian P58IPK, P58IPK, homolog of mamallian P58IPK -0.170 -0.069
128 261946_at AT1G64560 -0.170 -0.022
129 251830_at AT3G55010 ATPURM, EMB2818, EMBRYO DEFECTIVE 2818, PUR5 -0.169 -0.115
130 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 -0.169 -0.068
131 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 -0.169 0.101
132 250764_at AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.167 0.159
133 254080_at AT4G25630 ATFIB2, FIB2, fibrillarin 2 -0.166 0.010
134 249354_at AT5G40480 EMB3012, embryo defective 3012 -0.166 -0.017
135 258474_at AT3G02650 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.165 -0.016
136 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.164 -0.129
137 255006_at AT4G10010 [Protein kinase superfamily protein] -0.163 -0.019
138 260157_at AT1G52930 [Ribosomal RNA processing Brix domain protein] -0.162 -0.010
139 256797_at AT3G18600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.162 0.034
140 250196_at AT5G14580 [polyribonucleotide nucleotidyltransferase, putative] -0.161 0.128
141 261296_at AT1G48460 unknown -0.160 -0.122
142 267174_at AT2G37600 [Ribosomal protein L36e family protein] -0.159 -0.086
143 245770_at AT1G30240 [FUNCTIONS IN: binding] -0.159 0.016
144 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 -0.157 -0.156
145 260905_at AT1G02710 [glycine-rich protein] -0.155 -0.022
146 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.154 0.096
147 260331_at AT1G80270 PPR596, PENTATRICOPEPTIDE REPEAT 596 -0.154 -0.014
148 254147_at AT4G24270 EMB140, EMBRYO DEFECTIVE 140 -0.153 0.015
149 250762_at AT5G05990 [Mitochondrial glycoprotein family protein] -0.153 -0.046
150 251256_at AT3G62300 unknown -0.151 -0.110
151 254595_at AT4G18960 AG, AGAMOUS -0.151 0.012
152 247575_at AT5G61030 GR-RBP3, glycine-rich RNA-binding protein 3 -0.151 0.053
153 266497_at AT2G06950 [copia-like retrotransposon family, has a 2.7e-243 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.150 -0.011
154 263488_at AT2G31840 MRL7-L, Mesophyll-cell RNAi Library line 7-like -0.150 -0.086
155 250025_at AT5G18290 SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B -0.150 -0.253
156 260425_at AT1G72440 EDA25, embryo sac development arrest 25, SWA2, SLOW WALKER2 -0.149 -0.006
157 264895_at AT1G23100 [GroES-like family protein] -0.149 0.137
158 265340_at AT2G18330 [AAA-type ATPase family protein] -0.146 0.036
159 251800_at AT3G55510 RBL, REBELOTE -0.146 0.040
160 252871_at AT4G40000 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.145 -0.019
161 254493_at AT4G20020 MORF1, multiple organellar RNA editing factor 1 -0.145 -0.048
162 260338_at AT1G69250 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] -0.144 0.019
163 252841_at AT3G42110 unknown -0.142 -0.027
164 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.142 0.049
165 257149_at AT3G27280 ATPHB4, prohibitin 4, PHB4, prohibitin 4 -0.142 0.127
166 246094_at AT5G19300 unknown -0.142 0.073
167 257498_at AT1G69660 [TRAF-like family protein] -0.141 -0.001
168 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.141 -0.036
169 251760_at AT3G55605 [Mitochondrial glycoprotein family protein] -0.141 0.025
170 254639_at AT4G18750 DOT4, DEFECTIVELY ORGANIZED TRIBUTARIES 4 -0.141 -0.131
171 253172_at AT4G35060 HIPP25, heavy metal associated isoprenylated plant protein 25 -0.140 -0.069