4.0:Information of module
seedling 24h after HZE WT
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010243 response to organonitrogen compound BP 3.310e-18
GO:0006950 response to stress BP 5.871e-18
GO:0010200 response to chitin BP 1.140e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 4.129e-16
GO:0001510 RNA methylation BP 6.338e-12
GO:0044085 cellular component biogenesis BP 1.153e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
seedling 24h after HZE WT		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 1.074 0.080
2 252539_at AT3G45730 unknown 0.877 -1.435
3 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.877 0.447
4 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.862 -0.332
5 248086_at AT5G55490 ATGEX1, GAMETE EXPRESSED PROTEIN 1, GEX1, gamete expressed protein 1 0.859 -0.859
6 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.764 0.387
7 250914_at AT5G03780 TRFL10, TRF-like 10 0.747 -0.453
8 254055_at AT4G25330 unknown 0.645 -0.203
9 254287_at AT4G22960 unknown 0.644 -0.083
10 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.626 0.087
11 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.619 0.378
12 246132_at AT5G20850 ATRAD51, RAD51 0.602 0.234
13 249326_at AT5G40840 AtRAD21.1, Sister chromatid cohesion 1 (SCC1) protein homolog 2, SYN2 0.599 0.374
14 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.590 0.780
15 249809_at AT5G23910 [ATP binding microtubule motor family protein] 0.573 0.406
16 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 0.488 -0.046
17 253044_at AT4G37290 unknown 0.485 -0.520
18 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 0.463 -0.395
19 254565_at AT4G19130 [Replication factor-A protein 1-related] 0.459 0.472
20 245137_at AT2G45460 [SMAD/FHA domain-containing protein ] 0.456 0.587
21 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.443 0.080
22 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.423 0.646
23 247081_at AT5G66130 ATRAD17, RADIATION SENSITIVE 17, RAD17, RADIATION SENSITIVE 17 0.417 -0.004
24 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.398 -0.823
25 250372_at AT5G11460 unknown 0.392 -0.402
26 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 0.370 0.992
27 250666_at AT5G07100 WRKY26, WRKY DNA-binding protein 26 0.370 -0.847
28 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.362 0.244
29 252330_at AT3G48770 [DNA binding] 0.346 -0.748
30 263515_at AT2G21640 unknown 0.340 0.586
31 255872_at AT2G30360 CIPK11, CBL-INTERACTING PROTEIN KINASE 11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SOS3-interacting protein 4, SNRK3.22, SNF1-RELATED PROTEIN KINASE 3.22 0.337 -0.203
32 253157_at AT4G35740 ATRECQ3, A. THALIANA RECQ HELICASE 3, RecQl3 0.314 -0.808
33 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.302 0.334
34 265449_at AT2G46610 At-RS31a, arginine/serine-rich splicing factor 31a, RS31a, arginine/serine-rich splicing factor 31a 0.267 0.711
35 260477_at AT1G11050 [Protein kinase superfamily protein] 0.263 -0.080
36 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.262 0.267
37 247528_at AT5G61460 ATRAD18, MIM, hypersensitive to MMS, irradiation and MMC, SMC6B, STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B 0.259 -0.163
38 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.253 -0.519
39 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 0.252 -0.428
40 264116_at AT2G31320 PARP1, POLY(ADP-RIBOSE) POLYMERASE 1 0.251 0.743
41 259792_at AT1G29690 CAD1, constitutively activated cell death 1 0.249 0.168
42 248738_at AT5G48020 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.245 0.271
43 251636_at AT3G57530 ATCPK32, CDPK32, CPK32, calcium-dependent protein kinase 32 0.239 0.285
44 263882_at AT2G21790 ATRNR1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, CLS8, CRINKLY LEAVES 8, DPD2, defective in pollen organelle DNA degradation 2, R1, RIBONUCLEOTIDE REDUCTASE 1, RNR1, ribonucleotide reductase 1 0.232 0.254
45 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.230 -0.498
46 254592_at AT4G18880 AT-HSFA4A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, HSF A4A, heat shock transcription factor A4A 0.221 -0.623
47 261063_at AT1G07520 [GRAS family transcription factor] 0.218 0.128
48 257017_at AT3G19620 [Glycosyl hydrolase family protein] 0.217 0.118
49 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.216 0.168
50 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.210 -0.288
51 254878_at AT4G11660 AT-HSFB2B, HSF7, HSFB2B, HEAT SHOCK TRANSCRIPTION FACTOR B2B 0.210 0.096
52 247080_at AT5G66140 PAD2, proteasome alpha subunit D2 0.210 0.495
53 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.209 -0.742
54 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.205 -0.074
55 247426_at AT5G62570 CBP60a, calmodulin-binding protein 60a 0.203 0.517
56 245353_at AT4G16000 unknown 0.200 -0.968
57 245209_at AT5G12340 unknown 0.198 -0.916
58 259602_at AT1G56520 [Disease resistance protein (TIR-NBS-LRR class) family] 0.196 0.168
59 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.543 0.012
60 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.423 0.027
61 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.284 0.061
62 249916_at AT5G22880 H2B, HISTONE H2B, HTB2, histone B2 -0.283 0.653
63 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.280 -0.389
64 257899_at AT3G28345 ABCB15, ATP-binding cassette B15, MDR13, multi-drug resistance 13 -0.275 0.062
65 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.256 -0.537
66 257134_at AT3G12870 unknown -0.245 0.253
67 257740_at AT3G27330 [zinc finger (C3HC4-type RING finger) family protein] -0.233 0.358
68 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.211 -1.057
69 261058_at AT1G01370 CENH3, CENTROMERIC HISTONE H3, HTR12 -0.195 0.108
70 248710_at AT5G48480 [Lactoylglutathione lyase / glyoxalase I family protein] -0.194 0.142
71 249011_at AT5G44670 GALS2, galactan synthase 2 -0.192 0.479
72 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.191 1.323
73 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.189 0.078
74 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.182 -0.117
75 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.169 -0.534
76 259805_at AT1G47890 AtRLP7, receptor like protein 7, RLP7, receptor like protein 7 -0.167 -1.148
77 256126_at AT1G18050 [SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein] -0.164 -0.039
78 255907_at AT1G17920 HDG12, homeodomain GLABROUS 12 -0.161 -0.132
79 263040_at AT1G23300 [MATE efflux family protein] -0.159 -0.768
80 253661_at AT4G30130 unknown -0.155 -0.263
81 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 -0.148 -0.074
82 253794_at AT4G28720 YUC8, YUCCA 8 -0.147 0.024
83 258587_at AT3G04310 unknown -0.144 -0.451
84 266427_at AT2G07170 [ARM repeat superfamily protein] -0.143 0.922
85 250758_at AT5G06000 ATEIF3G2, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, EIF3G2, eukaryotic translation initiation factor 3G2 -0.141 0.386
86 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 -0.141 1.214
87 250937_at AT5G03230 unknown -0.140 0.645
88 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.137 -0.797
89 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] -0.137 -0.233
90 262871_at AT1G65010 [INVOLVED IN: flower development] -0.137 -0.329
91 248631_at AT5G49000 [Galactose oxidase/kelch repeat superfamily protein] -0.136 0.031
92 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.133 0.042
93 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.133 -0.616
94 247244_at AT5G64710 [Putative endonuclease or glycosyl hydrolase] -0.133 -0.965
95 263787_at AT2G46420 unknown -0.132 1.044
96 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.132 -0.202
97 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.131 0.149
98 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 -0.125 -0.800
99 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 -0.124 -0.917
100 264743_at AT1G62090 [pseudogene] -0.124 -1.156
101 249571_at AT5G37620 [Cysteine/Histidine-rich C1 domain family protein] -0.122 -0.066
102 256490_at AT1G31460 unknown -0.121 -0.905
103 266629_at AT2G35590 [pseudogene] -0.121 -0.600
104 266340_at AT2G01480 [O-fucosyltransferase family protein] -0.120 0.545
105 248286_at AT5G52870 MAKR5, MEMBRANE-ASSOCIATED KINASE REGULATOR 5 -0.119 -0.716
106 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 -0.119 0.482
107 265960_at AT2G37470 [Histone superfamily protein] -0.119 0.524
108 261306_at AT1G48610 [AT hook motif-containing protein] -0.118 -0.239
109 249169_at AT5G42880 unknown -0.116 -0.398
110 249673_at AT5G35920 pseudogene -0.115 -0.715
111 259583_at AT1G28070 unknown -0.114 0.631
112 256212_at AT1G50970 [Membrane trafficking VPS53 family protein] -0.114 -0.092
113 249566_at AT5G38450 CYP735A1, cytochrome P450, family 735, subfamily A, polypeptide 1 -0.111 -0.030
114 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.110 -0.681
115 253516_at AT4G31360 [selenium binding] -0.109 1.030