4.0:Information of module
seedling 1.5h after Gamma atm-1
In comparison with UV help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 5.922e-24
GO:1901700 response to oxygen-containing compound BP 8.554e-23
GO:0050896 response to stimulus BP 8.450e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 2.497e-14
GO:1901700 response to oxygen-containing compound BP 1.659e-13
GO:0042221 response to chemical BP 1.925e-12
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
seedling 1.5h after Gamma atm-1		 Log2 signal ratio
UV
1 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 0.771 0.141
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.713 0.208
3 246001_at AT5G20790 unknown 0.677 -0.384
4 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.658 0.023
5 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.594 0.371
6 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.575 0.109
7 253044_at AT4G37290 unknown 0.562 0.424
8 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.561 0.461
9 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.550 0.057
10 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.537 0.099
11 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.527 0.240
12 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.517 0.351
13 252427_at AT3G47640 PYE, POPEYE 0.512 -0.058
14 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.499 0.381
15 256619_at AT3G24460 [Serinc-domain containing serine and sphingolipid biosynthesis protein] 0.492 0.004
16 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 0.489 -0.005
17 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 0.481 0.173
18 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.467 0.059
19 245082_at AT2G23270 unknown 0.460 0.236
20 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.438 0.437
21 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 0.438 0.221
22 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.422 0.021
23 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.403 0.319
24 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.402 0.174
25 265203_at AT2G36630 [Sulfite exporter TauE/SafE family protein] 0.399 0.056
26 246132_at AT5G20850 ATRAD51, RAD51 0.381 0.028
27 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.366 0.374
28 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.363 0.269
29 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.362 0.118
30 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.360 0.147
31 264757_at AT1G61360 [S-locus lectin protein kinase family protein] 0.351 0.060
32 258203_at AT3G13950 unknown 0.350 0.455
33 261249_at AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 0.349 0.456
34 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 0.343 0.124
35 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.339 0.132
36 254016_at AT4G26150 CGA1, cytokinin-responsive gata factor 1, GATA22, GATA TRANSCRIPTION FACTOR 22, GNL, GNC-LIKE 0.337 -0.074
37 266017_at AT2G18690 unknown 0.334 0.185
38 261443_at AT1G28480 GRX480, roxy19 0.332 0.348
39 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.331 0.079
40 249459_at AT5G39580 [Peroxidase superfamily protein] 0.330 -0.052
41 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.324 0.000
42 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.320 0.414
43 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.317 0.248
44 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.316 -0.113
45 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 0.316 0.404
46 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.301 -0.058
47 256999_at AT3G14200 [Chaperone DnaJ-domain superfamily protein] 0.299 0.254
48 263374_at AT2G20560 [DNAJ heat shock family protein] 0.297 0.326
49 252661_at AT3G44450 unknown 0.296 0.680
50 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.296 0.520
51 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 0.287 -0.019
52 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.285 0.392
53 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase 0.281 -0.065
54 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.279 0.079
55 264716_at AT1G70170 MMP, matrix metalloproteinase 0.276 0.062
56 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.275 0.401
57 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.266 0.212
58 245875_at AT1G26240 [Proline-rich extensin-like family protein] 0.266 -0.062
59 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.265 -0.017
60 252010_at AT3G52740 unknown 0.256 0.315
61 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.255 0.496
62 259479_at AT1G19020 unknown 0.254 0.174
63 259037_at AT3G09350 Fes1A, Fes1A 0.251 0.297
64 264685_at AT1G65610 ATGH9A2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, KOR2, KORRIGAN 2 0.248 0.138
65 250372_at AT5G11460 unknown 0.244 0.048
66 250279_at AT5G13200 [GRAM domain family protein] 0.241 0.206
67 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.239 0.119
68 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 0.239 0.260
69 246968_at AT5G24870 [RING/U-box superfamily protein] 0.238 0.082
70 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.237 -0.028
71 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.236 -0.481
72 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.235 0.072
73 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.231 0.634
74 257536_at AT3G02800 AtPFA-DSP3, PFA-DSP3, plant and fungi atypical dual-specificity phosphatase 3 0.230 0.215
75 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.229 0.193
76 247779_at AT5G58760 DDB2, damaged DNA binding 2 0.228 0.204
77 251824_at AT3G55090 ABCG16, ATP-binding cassette G16 0.228 -0.021
78 257061_at AT3G18250 [Putative membrane lipoprotein] 0.227 0.370
79 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.226 0.387
80 247769_at AT5G58910 LAC16, laccase 16 0.226 -0.005
81 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] 0.225 0.155
82 248570_at AT5G49780 [Leucine-rich repeat protein kinase family protein] 0.225 0.002
83 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.225 0.089
84 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.224 0.028
85 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 0.224 -0.037
86 253757_at AT4G28950 ARAC7, Arabidopsis RAC-like 7, ATRAC7, ATROP9, RAC7, ROP9, RHO-related protein from plants 9 0.223 -0.030
87 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.215 -0.088
88 254430_at AT4G20820 [FAD-binding Berberine family protein] 0.214 0.088
89 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.213 0.562
90 252222_at AT3G49845 WIH3, WINDHOSE 3 0.213 -0.015
91 254524_at AT4G20000 [VQ motif-containing protein] 0.211 0.044
92 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.481 -0.139
93 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.411 -0.056
94 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.399 -0.143
95 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.393 -0.039
96 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.390 -0.083
97 259560_at AT1G21270 WAK2, wall-associated kinase 2 -0.380 0.149
98 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.374 -0.164
99 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.348 -0.148
100 264021_at AT2G21200 SAUR7, SMALL AUXIN UPREGULATED RNA 7 -0.325 -0.328
101 251575_at AT3G58120 ATBZIP61, BZIP61 -0.318 -0.432
102 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.317 -0.075
103 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.315 0.111
104 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 -0.277 -0.123
105 246495_at AT5G16200 [50S ribosomal protein-related] -0.262 -0.159
106 253148_at AT4G35620 CYCB2;2, Cyclin B2;2 -0.253 -0.101
107 254193_at AT4G23870 unknown -0.253 -0.317
108 264777_at AT1G08630 THA1, threonine aldolase 1 -0.249 0.162
109 263800_at AT2G24600 [Ankyrin repeat family protein] -0.248 0.049
110 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 -0.248 0.031
111 252089_at AT3G52110 unknown -0.247 -0.104
112 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.242 -0.069
113 259546_at AT1G35350 [EXS (ERD1/XPR1/SYG1) family protein] -0.236 0.076
114 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.233 -0.237
115 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 -0.231 0.170
116 264910_at AT1G61100 [disease resistance protein (TIR class), putative] -0.229 -0.069
117 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.228 0.010
118 267636_at AT2G42110 unknown -0.228 -0.046
119 251299_at AT3G61950 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.227 -0.194
120 249955_at AT5G18840 [Major facilitator superfamily protein] -0.227 -0.022
121 248392_at AT5G52050 [MATE efflux family protein] -0.226 -0.141
122 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] -0.216 -0.064
123 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.216 -0.302
124 257071_at AT3G28180 ATCSLC04, Cellulose-synthase-like C4, ATCSLC4, CSLC04, CSLC04, Cellulose-synthase-like C4, CSLC4, CELLULOSE-SYNTHASE LIKE C4 -0.215 -0.040
125 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.214 -0.056
126 266956_at AT2G34510 unknown -0.214 -0.176
127 250936_at AT5G03120 unknown -0.212 -0.502
128 252215_at AT3G50240 KICP-02 -0.207 -0.142
129 257547_at AT3G13000 unknown -0.206 -0.279
130 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.200 -0.073
131 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 -0.199 -0.102
132 245176_at AT2G47440 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.198 -0.165
133 264529_at AT1G30820 [CTP synthase family protein] -0.197 0.021
134 261292_at AT1G36940 unknown -0.190 -0.081
135 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.189 -0.194
136 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.189 -0.216
137 254697_at AT4G17970 ALMT12, aluminum-activated, malate transporter 12, ATALMT12, QUAC1, quick-activating anion channel 1 -0.189 -0.153
138 248179_at AT5G54380 THE1, THESEUS1 -0.188 -0.096
139 253580_at AT4G30400 [RING/U-box superfamily protein] -0.187 -0.212
140 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.187 -0.199
141 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.186 -0.044
142 252193_at AT3G50060 MYB77, myb domain protein 77 -0.186 0.085
143 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.185 0.155
144 265938_at AT2G19620 NDL3, N-MYC downregulated-like 3 -0.185 -0.068
145 258544_at AT3G07040 RPM1, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, RPS3, RESISTANCE TO PSEUDOMONAS SYRINGAE 3 -0.184 -0.053
146 247940_at AT5G57190 PSD2, phosphatidylserine decarboxylase 2 -0.183 0.060
147 264636_at AT1G65490 unknown -0.180 -0.147
148 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 -0.180 -0.058
149 261405_at AT1G18740 unknown -0.180 -0.021
150 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.179 -0.189
151 250261_at AT5G13400 [Major facilitator superfamily protein] -0.178 -0.314
152 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.176 -0.112
153 267209_at AT2G30930 unknown -0.174 -0.143
154 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.174 -0.162
155 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.172 -0.145
156 261026_at AT1G01240 unknown -0.172 0.063
157 261791_at AT1G16170 unknown -0.171 -0.232
158 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.170 -0.480
159 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.169 -0.042
160 258530_at AT3G06840 unknown -0.169 -0.220
161 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 -0.166 -0.200
162 261780_at AT1G76310 CYCB2;4, CYCLIN B2;4 -0.166 -0.116
163 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.165 -0.066
164 263499_at AT2G42580 TTL3, tetratricopetide-repeat thioredoxin-like 3, VIT, VHI-INTERACTING TPR CONTAINING PROTEIN -0.165 -0.061
165 262752_at AT1G16330 CYCB3;1, cyclin b3;1 -0.164 -0.080
166 250877_at AT5G04040 SDP1, SUGAR-DEPENDENT1 -0.164 0.045
167 259671_at AT1G52290 AtPERK15, proline-rich extensin-like receptor kinase 15, PERK15, proline-rich extensin-like receptor kinase 15 -0.164 0.021
168 245343_at AT4G15830 [ARM repeat superfamily protein] -0.164 -0.105
169 256096_at AT1G13650 unknown -0.164 -0.003
170 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.162 -0.332
171 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.162 -0.164
172 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.162 0.200
173 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 -0.162 -0.253
174 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.160 -0.263
175 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 -0.160 0.063
176 251413_at AT3G60320 unknown -0.159 -0.096
177 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 -0.159 -0.110
178 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.159 -0.088
179 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS -0.159 0.024
180 257005_at AT3G14190 CMR1, COPPER MODIFIED RESISTANCE 1 -0.159 -0.077
181 252237_at AT3G49950 [GRAS family transcription factor] -0.158 -0.132