4.0:Information of module
seedling 1.5h after Gamma atm-1
In comparison with gun1gun5 far-red pretreated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 5.922e-24
GO:1901700 response to oxygen-containing compound BP 8.554e-23
GO:0050896 response to stimulus BP 8.450e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 2.497e-14
GO:1901700 response to oxygen-containing compound BP 1.659e-13
GO:0042221 response to chemical BP 1.925e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
seedling 1.5h after Gamma atm-1		 Log2 signal ratio
gun1gun5 far-red pretreated
1 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 0.771 -0.040
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.713 -0.438
3 246001_at AT5G20790 unknown 0.677 0.106
4 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.658 0.083
5 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.594 -0.214
6 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.575 -0.056
7 253044_at AT4G37290 unknown 0.562 -0.049
8 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.561 -0.161
9 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.550 -0.069
10 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.537 0.099
11 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.527 -0.088
12 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.517 -0.591
13 252427_at AT3G47640 PYE, POPEYE 0.512 0.082
14 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.499 -0.823
15 256619_at AT3G24460 [Serinc-domain containing serine and sphingolipid biosynthesis protein] 0.492 0.078
16 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 0.489 0.006
17 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 0.481 -0.042
18 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.467 -0.078
19 245082_at AT2G23270 unknown 0.460 -0.000
20 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.438 -0.287
21 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 0.438 -0.329
22 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.422 -0.147
23 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.403 -0.230
24 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.402 -0.517
25 265203_at AT2G36630 [Sulfite exporter TauE/SafE family protein] 0.399 0.123
26 246132_at AT5G20850 ATRAD51, RAD51 0.381 0.005
27 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.366 -0.272
28 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.363 -0.778
29 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.362 -0.393
30 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.360 -0.346
31 264757_at AT1G61360 [S-locus lectin protein kinase family protein] 0.351 -0.265
32 258203_at AT3G13950 unknown 0.350 -0.164
33 261249_at AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 0.349 -0.001
34 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 0.343 -0.250
35 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.339 -0.174
36 254016_at AT4G26150 CGA1, cytokinin-responsive gata factor 1, GATA22, GATA TRANSCRIPTION FACTOR 22, GNL, GNC-LIKE 0.337 0.262
37 266017_at AT2G18690 unknown 0.334 -0.308
38 261443_at AT1G28480 GRX480, roxy19 0.332 -0.275
39 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.331 -0.354
40 249459_at AT5G39580 [Peroxidase superfamily protein] 0.330 -0.229
41 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.324 -0.227
42 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.320 -0.307
43 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.317 -0.417
44 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.316 0.271
45 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 0.316 -0.155
46 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.301 -0.272
47 256999_at AT3G14200 [Chaperone DnaJ-domain superfamily protein] 0.299 0.012
48 263374_at AT2G20560 [DNAJ heat shock family protein] 0.297 -0.514
49 252661_at AT3G44450 unknown 0.296 -0.141
50 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.296 -0.071
51 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 0.287 -0.380
52 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.285 -0.452
53 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase 0.281 -0.131
54 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.279 0.287
55 264716_at AT1G70170 MMP, matrix metalloproteinase 0.276 -0.201
56 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 0.275 -0.210
57 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.266 -0.635
58 245875_at AT1G26240 [Proline-rich extensin-like family protein] 0.266 -0.052
59 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.265 -0.186
60 252010_at AT3G52740 unknown 0.256 -0.070
61 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.255 0.006
62 259479_at AT1G19020 unknown 0.254 -0.828
63 259037_at AT3G09350 Fes1A, Fes1A 0.251 -0.324
64 264685_at AT1G65610 ATGH9A2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, KOR2, KORRIGAN 2 0.248 -0.065
65 250372_at AT5G11460 unknown 0.244 0.121
66 250279_at AT5G13200 [GRAM domain family protein] 0.241 -0.477
67 261585_at AT1G01010 ANAC001, NAC domain containing protein 1, NAC001, NAC domain containing protein 1 0.239 -0.245
68 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 0.239 -0.157
69 246968_at AT5G24870 [RING/U-box superfamily protein] 0.238 0.008
70 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.237 -0.059
71 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.236 -0.289
72 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.235 -0.064
73 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.231 -0.512
74 257536_at AT3G02800 AtPFA-DSP3, PFA-DSP3, plant and fungi atypical dual-specificity phosphatase 3 0.230 -0.185
75 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.229 -0.351
76 247779_at AT5G58760 DDB2, damaged DNA binding 2 0.228 -0.045
77 251824_at AT3G55090 ABCG16, ATP-binding cassette G16 0.228 -0.032
78 257061_at AT3G18250 [Putative membrane lipoprotein] 0.227 -0.415
79 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.226 -0.422
80 247769_at AT5G58910 LAC16, laccase 16 0.226 0.029
81 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] 0.225 -0.202
82 248570_at AT5G49780 [Leucine-rich repeat protein kinase family protein] 0.225 -0.021
83 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.225 -0.008
84 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.224 0.045
85 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 0.224 -0.065
86 253757_at AT4G28950 ARAC7, Arabidopsis RAC-like 7, ATRAC7, ATROP9, RAC7, ROP9, RHO-related protein from plants 9 0.223 0.063
87 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.215 -0.079
88 254430_at AT4G20820 [FAD-binding Berberine family protein] 0.214 -0.045
89 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.213 -0.304
90 252222_at AT3G49845 WIH3, WINDHOSE 3 0.213 -0.041
91 254524_at AT4G20000 [VQ motif-containing protein] 0.211 -0.078
92 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.481 0.005
93 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.411 0.000
94 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.399 0.125
95 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.393 0.014
96 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.390 0.126
97 259560_at AT1G21270 WAK2, wall-associated kinase 2 -0.380 0.023
98 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.374 0.051
99 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.348 0.062
100 264021_at AT2G21200 SAUR7, SMALL AUXIN UPREGULATED RNA 7 -0.325 0.096
101 251575_at AT3G58120 ATBZIP61, BZIP61 -0.318 0.363
102 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.317 0.110
103 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.315 -0.049
104 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 -0.277 0.181
105 246495_at AT5G16200 [50S ribosomal protein-related] -0.262 -0.104
106 253148_at AT4G35620 CYCB2;2, Cyclin B2;2 -0.253 0.092
107 254193_at AT4G23870 unknown -0.253 0.257
108 264777_at AT1G08630 THA1, threonine aldolase 1 -0.249 0.071
109 263800_at AT2G24600 [Ankyrin repeat family protein] -0.248 -0.003
110 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 -0.248 0.047
111 252089_at AT3G52110 unknown -0.247 -0.035
112 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.242 -0.057
113 259546_at AT1G35350 [EXS (ERD1/XPR1/SYG1) family protein] -0.236 0.084
114 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.233 0.021
115 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 -0.231 -0.026
116 264910_at AT1G61100 [disease resistance protein (TIR class), putative] -0.229 0.202
117 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.228 0.014
118 267636_at AT2G42110 unknown -0.228 0.023
119 251299_at AT3G61950 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.227 0.030
120 249955_at AT5G18840 [Major facilitator superfamily protein] -0.227 0.030
121 248392_at AT5G52050 [MATE efflux family protein] -0.226 -0.158
122 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] -0.216 0.086
123 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.216 0.002
124 257071_at AT3G28180 ATCSLC04, Cellulose-synthase-like C4, ATCSLC4, CSLC04, CSLC04, Cellulose-synthase-like C4, CSLC4, CELLULOSE-SYNTHASE LIKE C4 -0.215 -0.022
125 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.214 0.088
126 266956_at AT2G34510 unknown -0.214 0.179
127 250936_at AT5G03120 unknown -0.212 0.109
128 252215_at AT3G50240 KICP-02 -0.207 0.309
129 257547_at AT3G13000 unknown -0.206 0.140
130 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.200 -0.189
131 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 -0.199 -0.079
132 245176_at AT2G47440 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.198 0.053
133 264529_at AT1G30820 [CTP synthase family protein] -0.197 -0.061
134 261292_at AT1G36940 unknown -0.190 -0.002
135 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.189 0.039
136 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.189 -0.370
137 254697_at AT4G17970 ALMT12, aluminum-activated, malate transporter 12, ATALMT12, QUAC1, quick-activating anion channel 1 -0.189 -0.094
138 248179_at AT5G54380 THE1, THESEUS1 -0.188 0.243
139 253580_at AT4G30400 [RING/U-box superfamily protein] -0.187 0.122
140 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.187 0.106
141 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.186 -0.294
142 252193_at AT3G50060 MYB77, myb domain protein 77 -0.186 -0.013
143 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.185 -0.169
144 265938_at AT2G19620 NDL3, N-MYC downregulated-like 3 -0.185 0.016
145 258544_at AT3G07040 RPM1, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, RPS3, RESISTANCE TO PSEUDOMONAS SYRINGAE 3 -0.184 0.001
146 247940_at AT5G57190 PSD2, phosphatidylserine decarboxylase 2 -0.183 -0.017
147 264636_at AT1G65490 unknown -0.180 -0.020
148 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 -0.180 0.064
149 261405_at AT1G18740 unknown -0.180 -0.100
150 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.179 0.005
151 250261_at AT5G13400 [Major facilitator superfamily protein] -0.178 -0.029
152 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.176 0.076
153 267209_at AT2G30930 unknown -0.174 -0.015
154 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.174 0.124
155 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.172 0.121
156 261026_at AT1G01240 unknown -0.172 0.122
157 261791_at AT1G16170 unknown -0.171 0.086
158 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.170 -0.436
159 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.169 0.021
160 258530_at AT3G06840 unknown -0.169 0.074
161 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 -0.166 -0.002
162 261780_at AT1G76310 CYCB2;4, CYCLIN B2;4 -0.166 0.069
163 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.165 0.003
164 263499_at AT2G42580 TTL3, tetratricopetide-repeat thioredoxin-like 3, VIT, VHI-INTERACTING TPR CONTAINING PROTEIN -0.165 0.177
165 262752_at AT1G16330 CYCB3;1, cyclin b3;1 -0.164 -0.056
166 250877_at AT5G04040 SDP1, SUGAR-DEPENDENT1 -0.164 0.026
167 259671_at AT1G52290 AtPERK15, proline-rich extensin-like receptor kinase 15, PERK15, proline-rich extensin-like receptor kinase 15 -0.164 -0.015
168 245343_at AT4G15830 [ARM repeat superfamily protein] -0.164 -0.064
169 256096_at AT1G13650 unknown -0.164 0.030
170 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.162 0.204
171 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.162 0.082
172 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.162 -0.083
173 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 -0.162 0.007
174 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.160 0.117
175 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 -0.160 0.111
176 251413_at AT3G60320 unknown -0.159 0.157
177 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 -0.159 0.028
178 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.159 0.053
179 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS -0.159 -0.114
180 257005_at AT3G14190 CMR1, COPPER MODIFIED RESISTANCE 1 -0.159 0.024
181 252237_at AT3G49950 [GRAS family transcription factor] -0.158 0.110