4.0:Information of module
Full AC2 T2
In comparison with Rsch 3d help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009853 photorespiration BP 1.348e-05
GO:0043094 cellular metabolic compound salvage BP 3.513e-05
GO:0080129 proteasome core complex assembly BP 1.571e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016246 RNA interference BP 1.844e-02
GO:0035194 posttranscriptional gene silencing by RN... BP 2.084e-02
GO:0016441 posttranscriptional gene silencing BP 2.236e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Full AC2 T2		 Log2 signal ratio
Rsch 3d
1 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.380 0.145
2 245363_at AT4G15120 [VQ motif-containing protein] 0.206 0.305
3 256597_at AT3G28500 [60S acidic ribosomal protein family] 0.198 0.082
4 261249_at AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 0.196 -0.015
5 245158_at AT2G33130 RALF18, RALFL18, ralf-like 18 0.196 0.183
6 266109_at AT2G37890 [Mitochondrial substrate carrier family protein] 0.195 0.038
7 248253_at AT5G53290 CRF3, cytokinin response factor 3 0.192 0.198
8 245107_at AT2G41690 AT-HSFB3, heat shock transcription factor B3, HSFB3, HEAT SHOCK TRANSCRIPTION FACTOR B3, HSFB3, heat shock transcription factor B3 0.190 0.075
9 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 0.184 0.015
10 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 0.179 -0.016
11 259921_at AT1G72540 [Protein kinase superfamily protein] 0.179 0.013
12 257201_at AT3G23740 unknown 0.176 -0.050
13 260122_at AT1G33900 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.166 0.065
14 248004_at AT5G56230 PRA1.G2, prenylated RAB acceptor 1.G2 0.163 -0.076
15 245239_at AT4G25530 FWA, FLOWERING WAGENINGEN, HDG6, HOMEODOMAIN GLABROUS 6 0.162 0.075
16 249352_at AT5G40430 AtMYB22, myb domain protein 22, MYB22, myb domain protein 22 0.161 0.052
17 263580_at AT2G17140 [Pentatricopeptide repeat (PPR) superfamily protein] 0.160 0.047
18 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN 0.160 -0.041
19 252043_at AT3G52390 [TatD related DNase] 0.158 -0.025
20 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] 0.156 -0.014
21 251252_at AT3G62230 DAF1, DUO1-activated F-box 1 0.153 0.122
22 263476_at AT2G31870 PARG1, poly(ADP-ribose) glycohydrolase 1, TEJ, Sanskrit for 'bright' 0.150 -0.076
23 247515_at AT5G61740 ABCA10, ATP-binding cassette A10, ATATH14, ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATH14, ABC2 homolog 14 0.150 0.010
24 257331_at ATMG01330 ORF107H 0.149 0.123
25 253824_at AT4G27940 ATMTM1, ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, MTM1, manganese tracking factor for mitochondrial SOD2 0.148 0.049
26 245073_at AT2G23210 [UDP-Glycosyltransferase superfamily protein] 0.147 0.005
27 253718_at AT4G29450 [Leucine-rich repeat protein kinase family protein] 0.145 0.005
28 247927_at AT5G57310 unknown 0.145 0.004
29 255005_at AT4G09990 GXM2, glucuronoxylan methyltransferase 2 0.143 0.065
30 260233_at AT1G74550 CYP98A9, cytochrome P450, family 98, subfamily A, polypeptide 9 0.142 0.112
31 266618_at AT2G35480 unknown 0.141 0.054
32 262674_at AT1G75910 EXL4, extracellular lipase 4 0.140 0.045
33 249721_at AT5G24655 LSU4, RESPONSE TO LOW SULFUR 4 0.139 0.338
34 245466_at AT4G16600 PGSIP8, plant glycogenin-like starch initiation protein 8 0.137 0.018
35 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.137 0.019
36 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 0.136 0.064
37 248069_at AT5G55650 unknown 0.134 -0.004
38 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.134 0.088
39 250342_at AT5G11870 [Alkaline phytoceramidase (aPHC)] 0.134 0.079
40 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.133 -0.011
41 254917_at AT4G11350 unknown 0.131 0.076
42 249547_at AT5G38160 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.130 0.132
43 260859_at AT1G43780 scpl44, serine carboxypeptidase-like 44 0.129 -0.044
44 247094_at AT5G66280 GMD1, GDP-D-mannose 4,6-dehydratase 1 0.129 0.120
45 258560_at AT3G06020 FAF4, FANTASTIC FOUR 4 0.128 0.018
46 265176_at AT1G23520 unknown 0.128 0.088
47 263681_at AT1G26840 ATORC6, ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, ORC6, origin recognition complex protein 6 0.126 0.188
48 267604_at AT2G32930 ZFN2, zinc finger nuclease 2 0.125 0.120
49 253222_at AT4G34850 LAP5, LESS ADHESIVE POLLEN 5, PSKB, polyketide synthase B 0.125 0.061
50 257026_at AT3G19200 unknown 0.124 0.086
51 262765_at AT1G13150 CYP86C4, cytochrome P450, family 86, subfamily C, polypeptide 4 0.123 0.012
52 248341_at AT5G52220 unknown 0.123 0.013
53 253413_at AT4G33020 ATZIP9, ZIP9 0.123 0.087
54 260355_at AT1G69180 CRC, CRABS CLAW 0.122 0.090
55 247059_at AT5G66690 UGT72E2 0.121 0.088
56 254413_at AT4G21440 ATM4, A. THALIANA MYB 4, ATMYB102, MYB-like 102, MYB102, MYB102, MYB-like 102 -0.276 -0.372
57 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.225 -0.006
58 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.223 0.115
59 262719_at AT1G43590 unknown -0.211 0.350
60 261931_at AT1G22430 [GroES-like zinc-binding dehydrogenase family protein] -0.208 -0.284
61 252047_at AT3G52490 SMXL3, SMAX1-like 3 -0.186 -0.026
62 251095_at AT5G01510 RUS5, ROOT UV-B SENSITIVE 5 -0.186 -0.096
63 267271_at AT2G02540 ATHB21, homeobox protein 21, HB21, homeobox protein 21, ZFHD4, ZINC FINGER HOMEODOMAIN 4, ZHD3, ZINC FINGER HOMEODOMAIN 3 -0.161 -0.005
64 252734_at AT3G43160 MEE38, maternal effect embryo arrest 38 -0.157 -0.007
65 253320_at AT4G34020 AtDJ1C, DJ-1 homolog C, DJ-1c, DJ1C, DJ-1 homolog C -0.153 -0.074
66 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.153 -0.048
67 248299_at AT5G53080 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.150 0.001
68 250157_at AT5G15180 [Peroxidase superfamily protein] -0.142 0.024
69 245149_at AT2G47620 ATSWI3A, SWITCH/sucrose nonfermenting 3A, CHB1, SWI3A, SWITCH/sucrose nonfermenting 3A -0.142 -0.030
70 256818_at AT3G21420 LBO1, LATERAL BRANCHING OXIDOREDUCTASE 1 -0.131 0.159
71 249951_at AT5G18930 BUD2, BUSHY AND DWARF 2, SAMDC4 -0.129 0.003
72 255518_at AT4G02300 PME39, pectin methylesterase 39 -0.128 0.084
73 248094_at AT5G55220 [trigger factor type chaperone family protein] -0.125 -0.055
74 258961_at AT3G10580 [Homeodomain-like superfamily protein] -0.122 0.044
75 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 -0.119 -0.141
76 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.118 0.025
77 249320_at AT5G40910 [Disease resistance protein (TIR-NBS-LRR class) family] -0.116 0.064
78 252918_at AT4G38980 unknown -0.114 0.050
79 264270_at AT1G60260 BGLU5, beta glucosidase 5 -0.114 -0.148
80 263230_at AT1G05670 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.113 -0.016
81 246983_at AT5G67200 [Leucine-rich repeat protein kinase family protein] -0.113 0.039
82 260388_at AT1G74070 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.109 -0.133
83 266429_at AT2G07190 unknown -0.109 0.014
84 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.107 0.222
85 261004_at AT1G26450 [Carbohydrate-binding X8 domain superfamily protein] -0.105 0.158
86 245095_at AT2G40860 [protein kinase family protein / protein phosphatase 2C ( PP2C) family protein] -0.104 -0.037
87 257737_at AT3G27440 UKL5, uridine kinase-like 5 -0.104 0.001
88 245130_at AT2G45340 [Leucine-rich repeat protein kinase family protein] -0.104 0.036
89 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 -0.102 -0.020
90 255184_at AT4G07730 [gypsy-like retrotransposon family (Athila), has a 6.8e-198 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.101 0.033
91 265076_at AT1G55490 CPN60B, chaperonin 60 beta, Cpn60beta1, chaperonin-60beta1, LEN1, LESION INITIATION 1 -0.099 -0.032
92 261002_at AT1G26520 [Cobalamin biosynthesis CobW-like protein] -0.098 -0.044
93 257459_at AT1G24040 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.097 -0.081
94 257630_at AT3G26150 CYP71B16, cytochrome P450, family 71, subfamily B, polypeptide 16 -0.096 -0.006
95 256111_at AT1G16820 [vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related] -0.096 -0.044
96 266194_at AT2G39090 APC7, anaphase-promoting complex 7, AtAPC7 -0.095 -0.179
97 255234_at AT4G05500 [pseudogene] -0.095 0.042
98 246949_at AT5G25140 CYP71B13, cytochrome P450, family 71, subfamily B, polypeptide 13 -0.094 0.026
99 256659_at AT3G12020 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.092 -0.018
100 246875_at AT5G26130 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.087 0.013
101 245790_at AT1G32200 ACT1, ACYLTRANSFERASE 1, ATS1 -0.087 -0.102
102 247461_at AT5G62100 ATBAG2, BCL-2-associated athanogene 2, BAG2, BCL-2-associated athanogene 2 -0.085 0.008
103 258853_at AT3G06440 [Galactosyltransferase family protein] -0.085 -0.149
104 264942_at AT1G67340 [HCP-like superfamily protein with MYND-type zinc finger] -0.084 -0.012
105 246829_at AT5G26570 ATGWD3, OK1, PWD, PHOSPHOGLUCAN WATER DIKINASE -0.084 -0.078
106 265438_at AT2G20970 unknown -0.083 0.060
107 257057_at AT3G15310 unknown -0.083 0.005
108 263962_at AT2G36350 [Protein kinase superfamily protein] -0.082 0.087
109 258350_at AT3G17510 CIPK1, CBL-interacting protein kinase 1, SnRK3.16, SNF1-RELATED PROTEIN KINASE 3.16 -0.081 -0.031
110 257712_at AT3G27420 unknown -0.081 -0.207