4.0:Information of module
nd-1 mock 48 hpi
In comparison with Shoot apex inflorescence (after bolting) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 1.533e-15
GO:0006364 rRNA processing BP 6.699e-13
GO:0016072 rRNA metabolic process BP 6.699e-13
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015698 inorganic anion transport BP 3.675e-07
GO:0010106 cellular response to iron ion starvation BP 1.169e-06
GO:0000041 transition metal ion transport BP 1.219e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
nd-1 mock 48 hpi		 Log2 signal ratio
Shoot apex inflorescence (after bolting)
1 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.466 -0.859
2 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 0.418 -1.078
3 250073_at AT5G17170 ENH1, enhancer of sos3-1 0.414 0.384
4 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 0.402 -0.886
5 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.382 -0.470
6 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 0.367 -1.524
7 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] 0.335 -0.205
8 250099_at AT5G17300 RVE1, REVEILLE 1 0.318 -0.599
9 252462_at AT3G47250 unknown 0.316 -0.199
10 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] 0.300 0.456
11 246596_at AT5G14740 BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CARBONIC ANHYDRASE 18, CA2, carbonic anhydrase 2 0.286 -0.823
12 261218_at AT1G20020 ATLFNR2, LEAF FNR 2, FNR2, ferredoxin-NADP(+)-oxidoreductase 2, LFNR2, leaf-type chloroplast-targeted FNR 2 0.285 1.020
13 264815_at AT1G03620 [ELMO/CED-12 family protein] 0.283 -0.839
14 246520_at AT5G15790 [RING/U-box superfamily protein] 0.262 0.365
15 246475_at AT5G16720 MyoB3, myosin binding protein 3 0.260 0.598
16 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.257 -1.154
17 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.255 -0.284
18 246493_at AT5G16180 ATCRS1, ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, CRS1, ortholog of maize chloroplast splicing factor CRS1 0.252 0.076
19 264525_at AT1G10060 ATBCAT-1, branched-chain amino acid transaminase 1, BCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1 0.228 0.101
20 264959_at AT1G77090 [Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein] 0.224 0.223
21 246509_at AT5G16715 EMB2247, embryo defective 2247 0.221 -0.073
22 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 0.220 0.382
23 250078_at AT5G16690 ATORC3, ORC3, origin recognition complex subunit 3 0.219 0.137
24 250117_at AT5G16440 IPP1, isopentenyl diphosphate isomerase 1 0.215 0.082
25 245506_at AT4G15700 [Thioredoxin superfamily protein] 0.213 -0.993
26 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 0.213 0.068
27 250168_at AT5G15320 unknown 0.208 0.924
28 249253_at AT5G42060 [DEK, chromatin associated protein] 0.208 -0.498
29 260471_at AT1G11070 unknown 0.208 -0.303
30 250104_at AT5G16610 unknown 0.205 -0.183
31 246450_at AT5G16820 ATHSF3, ARABIDOPSIS HEAT SHOCK FACTOR 3, ATHSFA1B, ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, HSF3, heat shock factor 3, HSFA1B, CLASS A HEAT SHOCK FACTOR 1B 0.202 -0.516
32 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 0.201 0.448
33 255111_at AT4G08780 [Peroxidase superfamily protein] 0.199 -0.569
34 266392_at AT2G41280 ATM10, M10 0.199 -1.081
35 246417_at AT5G16990 [Zinc-binding dehydrogenase family protein] 0.198 0.827
36 254747_at AT4G13020 MHK 0.196 0.627
37 250115_at AT5G16420 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.191 -0.500
38 246517_at AT5G15760 PSRP3/2, plastid-specific ribosomal protein 3/2 0.191 0.819
39 250127_at AT5G16380 unknown 0.190 -0.402
40 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.188 0.461
41 267526_at AT2G30570 PSBW, photosystem II reaction center W 0.186 1.412
42 249694_at AT5G35790 G6PD1, glucose-6-phosphate dehydrogenase 1 0.185 1.143
43 250131_at AT5G16550 unknown 0.184 -0.219
44 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.184 -0.363
45 245044_at AT2G26500 [cytochrome b6f complex subunit (petM), putative] 0.183 0.584
46 251885_at AT3G54050 HCEF1, high cyclic electron flow 1 0.183 0.680
47 262897_at AT1G59840 CCB4, cofactor assembly of complex C 0.182 -0.203
48 259197_at AT3G03670 [Peroxidase superfamily protein] -0.548 -0.826
49 248556_at AT5G50350 unknown -0.412 -0.292
50 255516_at AT4G02270 RHS13, root hair specific 13 -0.373 -0.285
51 256073_at AT1G18100 E12A11, MFT, MOTHER OF FT AND TFL1 -0.318 -0.896
52 262719_at AT1G43590 unknown -0.308 -0.296
53 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.286 -0.737
54 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 -0.277 0.084
55 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.260 0.504
56 267576_at AT2G30640 MUG2, MUSTANG 2 -0.259 -0.591
57 264543_at AT1G55790 [FUNCTIONS IN: metal ion binding] -0.240 -0.340
58 249377_at AT5G40690 unknown -0.240 -0.181
59 252502_at AT3G46900 COPT2, copper transporter 2 -0.239 -0.818
60 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.238 -0.779
61 267409_at AT2G34910 unknown -0.233 0.365
62 247331_at AT5G63530 ATFP3, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, FP3, farnesylated protein 3 -0.228 0.348
63 252205_at AT3G50350 unknown -0.223 0.086
64 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.216 -0.668
65 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.201 -0.065
66 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] -0.196 0.126
67 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.194 -0.040
68 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.188 -0.063
69 246842_at AT5G26731 unknown -0.186 -0.009
70 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.185 0.190
71 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.184 -0.848
72 250172_at AT5G14330 unknown -0.181 -0.445
73 265293_at AT2G14020 unknown -0.177 -0.093
74 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.176 -0.219
75 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.176 -0.288
76 247094_at AT5G66280 GMD1, GDP-D-mannose 4,6-dehydratase 1 -0.174 -0.392
77 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.174 -0.017
78 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.174 -0.722
79 266941_at AT2G18980 [Peroxidase superfamily protein] -0.170 0.478
80 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.168 -0.355
81 258868_at AT3G03110 CRM1B, XPO1B, exportin 1B -0.165 0.643
82 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.164 0.270
83 260994_at AT1G12130 [Flavin-binding monooxygenase family protein] -0.159 -1.533
84 251755_at AT3G55790 unknown -0.158 -1.465
85 245884_at AT5G09300 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] -0.157 0.276
86 265646_at AT2G27360 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.153 0.617
87 246135_at AT5G20885 [RING/U-box superfamily protein] -0.147 -0.025
88 252311_at AT3G49370 [Calcium-dependent protein kinase (CDPK) family protein] -0.146 -0.010
89 265275_at AT2G28440 [proline-rich family protein] -0.145 -0.718
90 262703_at AT1G16510 SAUR41, SMALL AUXIN UPREGULATED 41 -0.145 0.618
91 254744_at AT4G13345 MEE55, maternal effect embryo arrest 55 -0.143 0.133
92 251106_at AT5G01500 TAAC, thylakoid ATP/ADP carrier -0.142 1.025
93 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.142 0.218