4.0:Information of module
Cocultivation 8 hrs leaf
In comparison with Col-0 DEX Shade help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009750 response to fructose BP 2.473e-08
GO:0009746 response to hexose BP 1.028e-07
GO:0034284 response to monosaccharide BP 1.953e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009605 response to external stimulus BP 1.405e-30
GO:0050896 response to stimulus BP 8.320e-30
GO:0009607 response to biotic stimulus BP 4.136e-26
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Cocultivation 8 hrs leaf		 Log2 signal ratio
Col-0 DEX Shade
1 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.699 0.211
2 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.643 1.136
3 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.616 1.532
4 260744_at AT1G15010 unknown 0.593 0.875
5 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.585 1.228
6 257670_at AT3G20340 unknown 0.584 0.035
7 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.521 0.017
8 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.450 0.691
9 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.432 0.541
10 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] 0.427 1.399
11 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.422 1.130
12 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.421 -0.631
13 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.416 2.117
14 264238_at AT1G54740 unknown 0.406 0.580
15 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A 0.402 0.582
16 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 0.391 1.049
17 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.389 0.186
18 255733_at AT1G25400 unknown 0.378 0.551
19 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.373 0.097
20 266798_at AT2G22850 AtbZIP6, basic leucine-zipper 6, bZIP6, basic leucine-zipper 6 0.372 0.108
21 250223_at AT5G14070 ROXY2 0.361 0.841
22 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 0.358 -0.021
23 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.358 -0.088
24 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 0.354 -0.265
25 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] 0.341 0.455
26 252570_at AT3G45300 ATIVD, IVD, isovaleryl-CoA-dehydrogenase, IVDH, ISOVALERYL-COA-DEHYDROGENASE 0.331 0.326
27 248040_at AT5G55970 [RING/U-box superfamily protein] 0.329 1.040
28 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.328 0.420
29 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.327 2.943
30 248564_at AT5G49700 AHL17, AT-hook motif nuclear localized protein 17 0.326 0.080
31 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.326 1.033
32 263118_at AT1G03090 MCCA 0.322 1.423
33 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.319 1.156
34 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE 0.316 0.356
35 260536_at AT2G43400 ETFQO, electron-transfer flavoprotein:ubiquinone oxidoreductase 0.308 0.482
36 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.303 1.090
37 259103_at AT3G11690 unknown 0.302 0.204
38 252989_at AT4G38420 sks9, SKU5 similar 9 0.302 0.035
39 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.298 0.637
40 263827_at AT2G40420 [Transmembrane amino acid transporter family protein] 0.295 0.603
41 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.294 -0.076
42 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.288 -0.986
43 248050_at AT5G56100 [glycine-rich protein / oleosin] 0.287 0.994
44 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.280 0.287
45 262026_at AT1G35670 ATCDPK2, calcium-dependent protein kinase 2, ATCPK11, CDPK2, calcium-dependent protein kinase 2, CPK11 0.280 0.250
46 247954_at AT5G56870 BGAL4, beta-galactosidase 4 0.279 0.857
47 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 0.278 0.503
48 252250_at AT3G49790 [Carbohydrate-binding protein] 0.276 1.123
49 251023_at AT5G02170 [Transmembrane amino acid transporter family protein] 0.273 1.710
50 261934_at AT1G22400 ATUGT85A1, ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UGT85A1 0.273 0.657
51 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.272 0.130
52 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.272 0.967
53 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.268 1.220
54 263490_at AT2G42620 MAX2, MORE AXILLARY BRANCHES 2, ORE9, ORESARA 9, PPS, PLEIOTROPIC PHOTOSIGNALING 0.262 0.255
55 259915_at AT1G72790 [hydroxyproline-rich glycoprotein family protein] 0.261 0.205
56 265511_at AT2G05540 [Glycine-rich protein family] 0.260 0.597
57 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.260 0.324
58 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 0.256 -0.468
59 245264_at AT4G17245 [RING/U-box superfamily protein] 0.253 0.351
60 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.249 -0.151
61 255617_at AT4G01330 [Protein kinase superfamily protein] 0.239 1.034
62 256799_at AT3G18560 unknown 0.236 0.289
63 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.236 1.134
64 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] 0.234 0.492
65 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.234 1.224
66 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.233 1.242
67 256772_at AT3G13750 BGAL1, beta galactosidase 1, BGAL1, beta-galactosidase 1 0.233 1.366
68 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor 0.232 -0.166
69 247717_at AT5G59320 LTP3, lipid transfer protein 3 -1.296 0.262
70 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.141 -0.257
71 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -1.120 -1.048
72 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -1.119 -0.913
73 249598_at AT5G37970 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.062 -0.162
74 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.052 -1.645
75 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -1.008 -1.106
76 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.965 -0.863
77 252063_at AT3G51590 LTP12, lipid transfer protein 12 -0.881 -0.162
78 260038_at AT1G68875 unknown -0.877 -0.162
79 261684_at AT1G47400 unknown -0.870 -1.555
80 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.834 -2.630
81 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 -0.775 1.108
82 260001_at AT1G67990 ATTSM1, TAPETUM-SPECIFIC METHYLTRANSFERASE 1, TSM1 -0.768 -0.162
83 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.757 -0.884
84 250798_at AT5G05340 PRX52, peroxidase 52 -0.750 -0.520
85 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.722 -0.988
86 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.692 -0.632
87 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.691 -0.030
88 255110_at AT4G08770 Prx37, peroxidase 37 -0.674 0.490
89 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 -0.659 -0.498
90 260556_at AT2G43620 [Chitinase family protein] -0.654 -0.634
91 254574_at AT4G19430 unknown -0.641 -0.696
92 262697_at AT1G75940 ATA27, BGLU20, BETA GLUCOSIDASE 20 -0.637 -0.162
93 264635_at AT1G65500 unknown -0.616 -0.924
94 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.597 0.267
95 249614_at AT5G37300 WSD1 -0.593 -0.396
96 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.572 0.100
97 245571_at AT4G14695 [Uncharacterised protein family (UPF0041)] -0.572 -0.493
98 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 -0.568 -1.730
99 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.567 0.627
100 257421_at AT1G12030 unknown -0.555 -0.953
101 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.540 -1.111
102 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 -0.526 -0.663
103 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] -0.522 -0.982
104 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.519 1.609
105 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.515 0.185
106 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 -0.511 0.317
107 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.510 -0.456
108 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 -0.504 -0.560
109 250828_at AT5G05250 unknown -0.502 -0.355
110 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.490 -0.772
111 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.484 0.050
112 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.479 -0.836
113 255595_at AT4G01700 [Chitinase family protein] -0.478 -0.303
114 255621_at AT4G01390 [TRAF-like family protein] -0.478 0.432
115 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.471 -0.639
116 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE -0.455 0.333
117 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.439 -0.676
118 255807_at AT4G10270 [Wound-responsive family protein] -0.436 1.219
119 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.429 -0.601
120 263829_at AT2G40435 unknown -0.427 -0.337
121 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] -0.426 -0.230
122 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.415 -0.120
123 258392_at AT3G15400 ATA20, anther 20 -0.413 0.565
124 259372_at AT1G69120 AGL7, AGAMOUS-like 7, AP1, APETALA1, AtAP1 -0.408 0.751
125 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 -0.394 0.307
126 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 -0.393 0.650
127 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 -0.393 0.097
128 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.387 -0.592
129 255912_at AT1G66960 LUP5 -0.387 0.643
130 265441_at AT2G20870 [cell wall protein precursor, putative] -0.387 0.072
131 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 -0.385 -0.051
132 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.385 -0.387
133 261221_at AT1G19960 unknown -0.380 -0.638
134 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.374 0.539
135 260560_at AT2G43590 [Chitinase family protein] -0.366 0.368