4.0:Information of module
Cocultivation 8 hrs leaf
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009750 response to fructose BP 2.473e-08
GO:0009746 response to hexose BP 1.028e-07
GO:0034284 response to monosaccharide BP 1.953e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009605 response to external stimulus BP 1.405e-30
GO:0050896 response to stimulus BP 8.320e-30
GO:0009607 response to biotic stimulus BP 4.136e-26
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Cocultivation 8 hrs leaf		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.699 -0.221
2 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.643 -0.551
3 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.616 0.253
4 260744_at AT1G15010 unknown 0.593 0.352
5 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.585 -0.250
6 257670_at AT3G20340 unknown 0.584 0.195
7 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.521 0.825
8 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.450 0.788
9 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.432 -0.256
10 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] 0.427 0.000
11 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.422 0.724
12 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.421 -0.168
13 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.416 0.462
14 264238_at AT1G54740 unknown 0.406 -1.076
15 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A 0.402 -0.572
16 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 0.391 1.312
17 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.389 -0.791
18 255733_at AT1G25400 unknown 0.378 -0.418
19 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.373 -0.448
20 266798_at AT2G22850 AtbZIP6, basic leucine-zipper 6, bZIP6, basic leucine-zipper 6 0.372 -0.464
21 250223_at AT5G14070 ROXY2 0.361 -0.389
22 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 0.358 1.049
23 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.358 -0.558
24 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 0.354 -0.328
25 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] 0.341 0.977
26 252570_at AT3G45300 ATIVD, IVD, isovaleryl-CoA-dehydrogenase, IVDH, ISOVALERYL-COA-DEHYDROGENASE 0.331 0.240
27 248040_at AT5G55970 [RING/U-box superfamily protein] 0.329 -0.225
28 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.328 -0.362
29 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.327 -0.626
30 248564_at AT5G49700 AHL17, AT-hook motif nuclear localized protein 17 0.326 -0.069
31 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.326 -0.935
32 263118_at AT1G03090 MCCA 0.322 -0.100
33 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.319 0.015
34 253373_at AT4G33150 LKR, LKR/SDH, LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE, SDH, SACCHAROPINE DEHYDROGENASE 0.316 0.807
35 260536_at AT2G43400 ETFQO, electron-transfer flavoprotein:ubiquinone oxidoreductase 0.308 -0.667
36 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.303 0.486
37 259103_at AT3G11690 unknown 0.302 -0.640
38 252989_at AT4G38420 sks9, SKU5 similar 9 0.302 0.609
39 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.298 0.650
40 263827_at AT2G40420 [Transmembrane amino acid transporter family protein] 0.295 0.111
41 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.294 0.467
42 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 0.288 0.974
43 248050_at AT5G56100 [glycine-rich protein / oleosin] 0.287 0.380
44 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.280 0.269
45 262026_at AT1G35670 ATCDPK2, calcium-dependent protein kinase 2, ATCPK11, CDPK2, calcium-dependent protein kinase 2, CPK11 0.280 -0.158
46 247954_at AT5G56870 BGAL4, beta-galactosidase 4 0.279 -0.300
47 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 0.278 -0.084
48 252250_at AT3G49790 [Carbohydrate-binding protein] 0.276 -0.260
49 251023_at AT5G02170 [Transmembrane amino acid transporter family protein] 0.273 0.286
50 261934_at AT1G22400 ATUGT85A1, ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UGT85A1 0.273 0.256
51 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.272 -0.691
52 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.272 0.841
53 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.268 0.025
54 263490_at AT2G42620 MAX2, MORE AXILLARY BRANCHES 2, ORE9, ORESARA 9, PPS, PLEIOTROPIC PHOTOSIGNALING 0.262 0.033
55 259915_at AT1G72790 [hydroxyproline-rich glycoprotein family protein] 0.261 0.260
56 265511_at AT2G05540 [Glycine-rich protein family] 0.260 -0.527
57 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.260 1.015
58 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 0.256 0.582
59 245264_at AT4G17245 [RING/U-box superfamily protein] 0.253 0.177
60 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.249 -0.217
61 255617_at AT4G01330 [Protein kinase superfamily protein] 0.239 0.591
62 256799_at AT3G18560 unknown 0.236 0.535
63 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.236 1.159
64 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] 0.234 0.054
65 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.234 1.103
66 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.233 -0.474
67 256772_at AT3G13750 BGAL1, beta galactosidase 1, BGAL1, beta-galactosidase 1 0.233 -0.354
68 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor 0.232 0.346
69 247717_at AT5G59320 LTP3, lipid transfer protein 3 -1.296 -0.668
70 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -1.141 -0.569
71 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -1.120 -0.364
72 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -1.119 -0.559
73 249598_at AT5G37970 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.062 -0.379
74 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.052 0.270
75 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -1.008 0.539
76 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.965 0.358
77 252063_at AT3G51590 LTP12, lipid transfer protein 12 -0.881 0.544
78 260038_at AT1G68875 unknown -0.877 -0.153
79 261684_at AT1G47400 unknown -0.870 -0.505
80 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.834 -0.462
81 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 -0.775 0.330
82 260001_at AT1G67990 ATTSM1, TAPETUM-SPECIFIC METHYLTRANSFERASE 1, TSM1 -0.768 -0.512
83 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.757 0.207
84 250798_at AT5G05340 PRX52, peroxidase 52 -0.750 0.325
85 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.722 -0.280
86 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.692 -0.256
87 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.691 -0.259
88 255110_at AT4G08770 Prx37, peroxidase 37 -0.674 0.824
89 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 -0.659 0.404
90 260556_at AT2G43620 [Chitinase family protein] -0.654 0.734
91 254574_at AT4G19430 unknown -0.641 -0.997
92 262697_at AT1G75940 ATA27, BGLU20, BETA GLUCOSIDASE 20 -0.637 -0.489
93 264635_at AT1G65500 unknown -0.616 0.746
94 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.597 -0.390
95 249614_at AT5G37300 WSD1 -0.593 -0.326
96 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.572 -0.106
97 245571_at AT4G14695 [Uncharacterised protein family (UPF0041)] -0.572 0.282
98 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 -0.568 -0.634
99 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.567 0.202
100 257421_at AT1G12030 unknown -0.555 0.301
101 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.540 0.273
102 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 -0.526 0.184
103 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] -0.522 -0.761
104 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.519 -0.127
105 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.515 0.290
106 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 -0.511 -0.138
107 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.510 -0.607
108 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 -0.504 0.662
109 250828_at AT5G05250 unknown -0.502 -0.283
110 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.490 0.160
111 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.484 0.467
112 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.479 0.977
113 255595_at AT4G01700 [Chitinase family protein] -0.478 1.605
114 255621_at AT4G01390 [TRAF-like family protein] -0.478 0.610
115 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.471 -0.025
116 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE -0.455 0.261
117 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.439 0.666
118 255807_at AT4G10270 [Wound-responsive family protein] -0.436 -0.739
119 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.429 0.735
120 263829_at AT2G40435 unknown -0.427 -0.069
121 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] -0.426 0.034
122 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.415 0.381
123 258392_at AT3G15400 ATA20, anther 20 -0.413 -0.031
124 259372_at AT1G69120 AGL7, AGAMOUS-like 7, AP1, APETALA1, AtAP1 -0.408 -0.750
125 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 -0.394 -0.303
126 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 -0.393 0.043
127 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 -0.393 0.384
128 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.387 0.628
129 255912_at AT1G66960 LUP5 -0.387 -0.042
130 265441_at AT2G20870 [cell wall protein precursor, putative] -0.387 -0.454
131 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 -0.385 0.401
132 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.385 0.503
133 261221_at AT1G19960 unknown -0.380 1.005
134 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.374 0.606
135 260560_at AT2G43590 [Chitinase family protein] -0.366 -0.253