4.0:Information of module
seedling h S Exp
In comparison with phyABCDE Dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 3.746e-27
GO:1901566 organonitrogen compound biosynthetic pro... BP 8.601e-25
GO:0043414 macromolecule methylation BP 7.014e-24
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0072348 sulfur compound transport BP 7.184e-04
GO:0006498 N-terminal protein lipidation BP 7.963e-04
GO:0006499 N-terminal protein myristoylation BP 7.963e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
seedling h S Exp		 Log2 signal ratio
phyABCDE Dark
1 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 0.969 -0.004
2 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 0.837 -0.016
3 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.716 0.148
4 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.638 0.079
5 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 0.618 0.202
6 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.435 0.134
7 254862_at AT4G12030 BASS5, BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, BAT5, bile acid transporter 5 0.435 0.095
8 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.433 0.225
9 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] 0.374 0.093
10 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.361 0.052
11 250196_at AT5G14580 [polyribonucleotide nucleotidyltransferase, putative] 0.358 0.122
12 266253_at AT2G27840 HD2D, histone deacetylase 2D, HDA13, HISTONE DEACETYLASE 13, HDT04, HDT4 0.341 0.205
13 257207_at AT3G14900 EMB3120, EMBRYO DEFECTIVE 3120 0.332 0.317
14 251106_at AT5G01500 TAAC, thylakoid ATP/ADP carrier 0.328 0.271
15 245770_at AT1G30240 [FUNCTIONS IN: binding] 0.324 0.075
16 265730_at AT2G32220 [Ribosomal L27e protein family] 0.309 0.206
17 261296_at AT1G48460 unknown 0.289 0.199
18 266934_at AT2G18900 [Transducin/WD40 repeat-like superfamily protein] 0.288 0.067
19 258166_at AT3G21540 [transducin family protein / WD-40 repeat family protein] 0.280 0.085
20 251593_at AT3G57660 NRPA1, nuclear RNA polymerase A1 0.280 0.215
21 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.278 0.195
22 263714_at AT2G20610 ALF1, ABERRANT LATERAL ROOT FORMATION 1, HLS3, HOOKLESS 3, RTY, ROOTY, RTY1, ROOTY 1, SUR1, SUPERROOT 1 0.278 0.024
23 248036_at AT5G55920 OLI2, OLIGOCELLULA 2 0.264 0.081
24 263477_at AT2G31790 [UDP-Glycosyltransferase superfamily protein] 0.263 -0.027
25 245421_at AT4G17430 [O-fucosyltransferase family protein] 0.261 -0.021
26 246457_at AT5G16750 TOZ, TORMOZEMBRYO DEFECTIVE 0.255 0.095
27 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.254 0.109
28 255225_at AT4G05410 YAO, YAOZHE 0.254 0.131
29 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] 0.251 0.094
30 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS 0.250 0.064
31 254455_at AT4G21140 unknown 0.244 0.176
32 245494_at AT4G16390 SVR7, suppressor of variegation 7 0.243 0.070
33 265961_at AT2G37400 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.241 0.159
34 254080_at AT4G25630 ATFIB2, FIB2, fibrillarin 2 0.239 0.194
35 262766_at AT1G13160 [ARM repeat superfamily protein] 0.236 0.106
36 247040_at AT5G67150 [HXXXD-type acyl-transferase family protein] 0.235 0.047
37 256065_at AT1G07070 [Ribosomal protein L35Ae family protein] 0.232 0.028
38 262573_at AT1G15390 ATDEF1, PDF1A, peptide deformylase 1A 0.232 0.118
39 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.231 0.184
40 253598_at AT4G30800 [Nucleic acid-binding, OB-fold-like protein] 0.227 0.019
41 252252_at AT3G49180 RID3, ROOT INITIATION DEFECTIVE 3 0.225 0.082
42 254430_at AT4G20820 [FAD-binding Berberine family protein] -0.842 -0.225
43 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.770 -0.177
44 259133_at AT3G05400 [Major facilitator superfamily protein] -0.718 -0.155
45 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.694 -0.009
46 263168_at AT1G03020 [Thioredoxin superfamily protein] -0.608 -0.021
47 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.600 -0.035
48 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.598 0.000
49 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.590 0.076
50 250025_at AT5G18290 SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B -0.580 -0.588
51 251130_at AT5G01180 AtNPF8.2, ATPTR5, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, NPF8.2, NRT1/ PTR family 8.2, PTR5, peptide transporter 5 -0.419 -0.121
52 262134_at AT1G77990 AST56, SULTR2;2, SULPHATE TRANSPORTER 2;2 -0.414 -0.068
53 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 -0.378 -0.050
54 248713_at AT5G48180 AtNSP5, NSP5, nitrile specifier protein 5 -0.373 -0.054
55 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.369 -0.163
56 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 -0.346 -0.128
57 264745_at AT1G62180 5'adenylylphosphosulfate reductase 2 -0.343 0.019
58 253525_at AT4G31330 unknown -0.311 -0.106
59 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 -0.291 -0.036
60 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 -0.288 0.072
61 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 -0.271 0.015
62 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.258 -0.083
63 249850_at AT5G23240 DJC76, DNA J protein C76 -0.239 -0.094
64 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.235 -0.081
65 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.217 -0.024
66 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.186 0.418
67 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.183 0.107
68 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 -0.171 -0.078
69 249533_at AT5G38790 unknown -0.168 -0.007
70 261292_at AT1G36940 unknown -0.167 -0.096
71 256453_at AT1G75270 DHAR2, dehydroascorbate reductase 2 -0.162 0.147
72 253454_at AT4G31875 unknown -0.160 0.043
73 255740_at AT1G25390 [Protein kinase superfamily protein] -0.160 -0.156
74 253990_at AT4G26160 ACHT1, atypical CYS HIS rich thioredoxin 1 -0.158 -0.040
75 246396_at AT1G58180 ATBCA6, A. THALIANA BETA CARBONIC ANHYDRASE 6, BCA6, beta carbonic anhydrase 6 -0.158 -0.172
76 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.154 0.164
77 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.143 -0.225
78 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 -0.139 -0.034
79 263287_at AT2G36145 unknown -0.139 0.030
80 249010_at AT5G44580 unknown -0.138 -0.271
81 251315_at AT3G61410 unknown -0.135 -0.073
82 257923_at AT3G23160 unknown -0.133 -0.090