4.0:Analysis result:Information of module
Mutant pif1-2 (Dark etiol)

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0009746
response to hexose
BP1.161e-05AtbZIP63 ATBZIP9 ATSEN1 LKR ATCIPK8 DIN4 ACT2 AT3G18060 AT3G15450 BCE2 ABI4 GF14 THA1 ACR9
GO:0034284
response to monosaccharide
BP1.309e-05AtbZIP63 ATBZIP9 ATSEN1 LKR ATCIPK8 DIN4 ACT2 AT3G18060 AT3G15450 BCE2 ABI4 GF14 THA1 ACR9
GO:0055082
cellular chemical homeostasis
BP8.892e-05AtbZIP63 ATBZIP9 FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS AT-PHH1 AtPIF4 ATCDF1 AT2G26690
GO:0007030
Golgi organization
BP9.956e-05FPS1 TUB6 ATCCH1 ACT2 AQP1 AT3G18060 AtCOR47 AtHMGR1 ATBETAFRUCT4 AT1G63010 GF14 ATHH2 CID1
GO:0010256
endomembrane system organization
BP1.072e-04FPS1 TUB6 ATCCH1 delta-ADR ACT2 AQP1 AT3G18060 AtCOR47 AtHMGR1 ATBETAFRUCT4 AT1G63010 GF14 ATHH2 CID1
GO:0048878
chemical homeostasis
BP1.627e-04AtbZIP63 ATBZIP9 DFL1 FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS GH3.17 AT-PHH1 AtPIF4 ATCDF1 AT2G26690 BAS1
GO:0070838
divalent metal ion transport
BP3.008e-04FPS1 AT5G02160 ATCAX4 OEC33 ATCCH1 ACT2 AQP1 AT3G18060 AtHMGR1 ATBETAFRUCT4 AT1G63010 ZIP3 ATCDF1 AT2G26690
GO:0072511
divalent inorganic cation transport
BP3.258e-04FPS1 AT5G02160 ATCAX4 OEC33 ATCCH1 ACT2 AQP1 AT3G18060 AtHMGR1 ATBETAFRUCT4 AT1G63010 ZIP3 ATCDF1 AT2G26690
GO:0006833
water transport
BP5.505e-04TUB6 ACT2 AQP1 AT3G18060 PIP1;3 AtCOR47 GF14 ZIP3 ATHH2 CID1
GO:0042044
fluid transport
BP5.505e-04TUB6 ACT2 AQP1 AT3G18060 PIP1;3 AtCOR47 GF14 ZIP3 ATHH2 CID1
GO:0030003
cellular cation homeostasis
BP5.544e-04FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS AT-PHH1 AtPIF4 ATCDF1 AT2G26690
GO:1901565
organonitrogen compound catabolic proces...
BP6.459e-04FPS1 CPH GDH2 ATPTR1 LKR AT4G29570 AT4G29610 HO4 PDH-E1 CYP702A8 AT-POX ATVLN2 ATKAS2 AT1G73040 ALDH6B2 THA1
GO:0006598
polyamine catabolic process
BP8.240e-04FPS1 CPH GDH2 PDH-E1 ATVLN2
GO:0006873
cellular ion homeostasis
BP8.375e-04FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS AT-PHH1 AtPIF4 ATCDF1 AT2G26690
GO:0042398
cellular modified amino acid biosyntheti...
BP9.640e-04FPS1 CPH GDH2 PANB2 PDH-E1 ATVLN2
GO:0009750
response to fructose
BP1.193e-03ATSEN1 LKR DIN4 ACT2 AT3G18060 AT3G15450 BCE2 GF14 THA1 ACR9
GO:0006084
acetyl-CoA metabolic process
BP1.739e-03FPS1 CPH TUB6 PDH-E1 PIP1;3 AtHMGR1 ACLA-3
GO:0006816
calcium ion transport
BP1.826e-03FPS1 ATCAX4 ATCCH1 ACT2 AQP1 AT3G18060 AtHMGR1 ATBETAFRUCT4 AT1G63010
GO:0051186
cofactor metabolic process
BP2.055e-03FPS1 CPH TUB6 PANB2 DHDPS ATPTR1 OEC33 CIP7 HO4 PDH-E1 AT-SO PIP1;3 AtHMGR1 AT1G18270 ATKAS2 AT1G73040 ALDH6B2 ACLA-3 CAC3
GO:0006637
acyl-CoA metabolic process
BP2.785e-03FPS1 CPH TUB6 PDH-E1 PIP1;3 AtHMGR1 ACLA-3
GO:0035383
thioester metabolic process
BP2.785e-03FPS1 CPH TUB6 PDH-E1 PIP1;3 AtHMGR1 ACLA-3
GO:0019216
regulation of lipid metabolic process
BP3.674e-03ATCCH1 WRI4 ATKAS2 ABI4
GO:0055080
cation homeostasis
BP3.873e-03FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS AT-PHH1 AtPIF4 ATCDF1 AT2G26690
GO:0006970
response to osmotic stress
BP4.370e-03FQR1 FPS1 AT5G38895 TUB8 ATVAMP714 GDH1 TUB6 GDH2 MPT2 ATCCH1 ATEHD1 ACT2 NAI2 AQP1 AT3G18060 IAA16 PIP1;3 AtCOR47 SNRK2-10 AtHMGR1 ATBETAFRUCT4 AT1G63010 ATVPS53 ABI4 GF14 TTL3 AT2G43320 ATHH2 CID1
GO:0016128
phytosteroid metabolic process
BP4.704e-03FPS1 CPH TUB6 PDH-E1 PIP1;3 GH3.17 BAS1
GO:0016131
brassinosteroid metabolic process
BP4.704e-03FPS1 CPH TUB6 PDH-E1 PIP1;3 GH3.17 BAS1
GO:0006595
polyamine metabolic process
BP5.085e-03FPS1 CPH GDH2 PDH-E1 ATVLN2
GO:0072527
pyrimidine-containing compound metabolic...
BP5.796e-03AT4G29570 AT4G29610 AT3G15140 AtDJ1A AtKTI12 AT1G30820
GO:0019725
cellular homeostasis
BP6.698e-03AtbZIP63 ATBZIP9 FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS AT-PHH1 AtPIF4 ATCDF1 AT2G26690
GO:0009743
response to carbohydrate
BP7.540e-03AtbZIP63 ATBZIP9 AT5G62210 AT5G38895 AT3G52740 ATSEN1 LKR ATCIPK8 DIN4 ACT2 AT3G18060 AT3G15450 BCE2 ABI4 GF14 THA1 ACR9
GO:0050801
ion homeostasis
BP8.050e-03FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS AT-PHH1 AtPIF4 ATCDF1 AT2G26690
GO:0046131
pyrimidine ribonucleoside metabolic proc...
BP8.502e-03AT4G29570 AT4G29610 AtKTI12
GO:0009056
catabolic process
BP1.018e-02BAM4 PKP-BETA1 FPS1 AT5G38895 TUB8 CPH TUB6 ASG2 GDH2 AT5G07800 AT5G04550 CSY2 ATPTR1 AT4G38540 ATBCA5 LKR AT4G29570 AT4G29610 ATTRE1 HO4 PDH-E1 ABCC1 CYP702A8 AT-POX AT1G65130 ACT2 AT3G17740 ATMFP2 LON3 AtCOR47 ATHPR1 GLI1 UBC5 ATVLN2 GLX2-1 SKIP16 ATUBP2 AT1G18270 ATKAS2 AT1G73040 AT1G17160 TUA1 AT-E1 ALDH6B2 ABI4 GF14 AT-PHH1 ATRABG3B ATGPX1 AT1G43140 THA1 AT1G23780 CDC27b ATCDF1 ATHH2 CID1
GO:0009744
response to sucrose
BP1.040e-02AT5G62210 AT3G52740 ATSEN1 LKR DIN4 AT3G15450 BCE2 ABI4 THA1 ACR9
GO:0010114
response to red light
BP1.066e-02APRR5 ARR5 HCF244 ACT2 ATHPR1 AtPIF4
GO:0034285
response to disaccharide
BP1.101e-02AT5G62210 AT3G52740 ATSEN1 LKR DIN4 AT3G15450 BCE2 ABI4 THA1 ACR9
GO:0006732
coenzyme metabolic process
BP1.105e-02FPS1 CPH TUB6 PANB2 DHDPS OEC33 PDH-E1 PIP1;3 AtHMGR1 AT1G18270 ATKAS2 ACLA-3 CAC3
GO:1901575
organic substance catabolic process
BP1.156e-02BAM4 PKP-BETA1 FPS1 TUB8 CPH TUB6 ASG2 GDH2 CSY2 ATPTR1 ATBCA5 LKR AT4G29570 AT4G29610 ATTRE1 HO4 PDH-E1 CYP702A8 AT-POX AT1G65130 ACT2 AT3G17740 ATMFP2 LON3 AtCOR47 ATHPR1 GLI1 UBC5 ATVLN2 GLX2-1 SKIP16 ATUBP2 AT1G18270 ATKAS2 AT1G73040 AT1G17160 TUA1 AT-E1 ALDH6B2 ABI4 GF14 AT1G43140 THA1 AT1G23780 CDC27b ATCDF1 ATHH2 CID1
GO:0080167
response to karrikin
BP1.320e-02AT5G62210 AT3G52740 LKR AT3G11600 GLI1 AT2G16660 FDH
GO:0006213
pyrimidine nucleoside metabolic process
BP1.332e-02AT4G29570 AT4G29610 AtKTI12
GO:0042744
hydrogen peroxide catabolic process
BP1.504e-02AT5G07800 AT5G04550 GF14 AT-PHH1 CID1
GO:0006575
cellular modified amino acid metabolic p...
BP1.518e-02FPS1 CPH GDH2 PANB2 PDH-E1 ATVLN2
GO:0016129
phytosteroid biosynthetic process
BP1.518e-02FPS1 CPH TUB6 PDH-E1 PIP1;3 GH3.17
GO:0016132
brassinosteroid biosynthetic process
BP1.518e-02FPS1 CPH TUB6 PDH-E1 PIP1;3 GH3.17
GO:0006817
phosphate ion transport
BP1.620e-02AtGDPD2 AT1G63010 AT2G03240
GO:0046916
cellular transition metal ion homeostasi...
BP1.624e-02ATCAX4 ATFER1 ATCCS ATCDF1
GO:0009310
amine catabolic process
BP1.649e-02FPS1 CPH GDH2 PDH-E1 CYP702A8 ATVLN2
GO:0042402
cellular biogenic amine catabolic proces...
BP1.649e-02FPS1 CPH GDH2 PDH-E1 CYP702A8 ATVLN2
GO:0007033
vacuole organization
BP1.663e-02ATCCH1 delta-ADR ACT2 AT3G18060 AtHMGR1
GO:0009965
leaf morphogenesis
BP1.799e-02AtTCP11 ANAC098 AT5G48360 AGD3 AT5G02160 OEC33 AtIDD2 JAG CDC27b
GO:0009646
response to absence of light
BP1.841e-02GDH1 DIN4 BCE2 CID1
GO:0030001
metal ion transport
BP1.938e-02FPS1 ATCHX3 PRA1.A1 AT5G02160 ATCAX4 ATFER1 OEC33 ATCCH1 ACT2 AQP1 AT3G18060 PIP1;3 ATCCS AtHMGR1 ATBETAFRUCT4 AT1G63010 ZIP3 AtGulLO5 ATCDF1 AT2G26690
GO:0042180
cellular ketone metabolic process
BP2.107e-02DHDPS CSY2 ATBCA5 ATCCH1 GLX2-1 SKIP16 WRI4 CAC3
GO:0042592
homeostatic process
BP2.420e-02AtbZIP63 ATBZIP9 DFL1 FPS1 AT5G02160 ATCAX4 ATFER1 OEC33 AQP1 AT3G11620 ATCCS GH3.17 AT-PHH1 AtPIF4 ATCDF1 AT2G26690 BAS1
GO:0006091
generation of precursor metabolites and ...
BP2.561e-02AT5G54980 PKP-BETA1 TUB6 CSY2 OEC33 HCF244 DEG5 AT3G28700 AtCOR47 ATHPR1 AT1G19740 AT1G18270 ATKAS2 AT-E1 GF14 ATHH2 ARASP CID1
GO:0044712
single-organism catabolic process
BP2.609e-02PKP-BETA1 TUB6 AT5G07800 AT5G04550 CSY2 ATPTR1 AT4G38540 ATBCA5 LKR AT4G29570 AT4G29610 ATTRE1 ABCC1 CYP702A8 AT-POX ATMFP2 AtCOR47 GLI1 GLX2-1 SKIP16 AT1G18270 ATKAS2 AT1G73040 AT1G17160 AT-E1 ALDH6B2 ABI4 GF14 AT-PHH1 ATGPX1 THA1 AT1G23780 ATCDF1 ATHH2 CID1
GO:0010218
response to far red light
BP3.087e-02APRR5 HCF244 ABCB19 ACT2 ATHPR1
GO:0048447
sepal morphogenesis
BP3.087e-02WYR AT5G48360 AT4G30130 JAG AT1G26540
GO:0048451
petal formation
BP3.087e-02WYR AT5G48360 AT4G30130 JAG AT1G26540
GO:0048453
sepal formation
BP3.087e-02WYR AT5G48360 AT4G30130 JAG AT1G26540
GO:0009651
response to salt stress
BP3.291e-02FPS1 AT5G38895 TUB8 ATVAMP714 GDH1 TUB6 GDH2 MPT2 ATCCH1 ATEHD1 ACT2 NAI2 AQP1 AT3G18060 PIP1;3 AtCOR47 SNRK2-10 AtHMGR1 ATBETAFRUCT4 AT1G63010 GF14 AT2G43320 ATHH2 CID1
GO:0042743
hydrogen peroxide metabolic process
BP3.483e-02AtTCP11 EFR AT5G07800 AT5G04550 OEC33 AtIDD2 LKR VEL1 AT3G23900 GF14 AT-PHH1 AtPIF4 CID1
GO:0044275
cellular carbohydrate catabolic process
BP3.512e-02BAM4 ATTRE1 GLI1 ABI4
GO:0006071
glycerol metabolic process
BP3.546e-02AtGDPD2 GLI1 AT1G18460
GO:0044248
cellular catabolic process
BP3.591e-02BAM4 AT5G38895 TUB8 TUB6 ASG2 AT5G07800 AT5G04550 CSY2 ATPTR1 AT4G38540 ATBCA5 LKR AT4G29570 AT4G29610 ATTRE1 HO4 ABCC1 CYP702A8 AT-POX AT1G65130 ACT2 AT3G17740 ATMFP2 LON3 ATHPR1 GLI1 UBC5 GLX2-1 SKIP16 ATUBP2 ATKAS2 AT1G73040 TUA1 ALDH6B2 ABI4 GF14 AT-PHH1 ATRABG3B ATGPX1 AT1G43140 THA1 AT1G23780 CDC27b ATCDF1 CID1
GO:0009887
organ morphogenesis
BP3.708e-02AtTCP11 WYR ANAC098 AT5G48360 AGD3 EMS1 AT5G02160 OEC33 AtIDD2 AT4G30130 AT2G33640 AT3G23900 ABCB19 AT1G29570 JAG AT1G26540 WRI4 AT2G16020 CDC27b
GO:0072593
reactive oxygen species metabolic proces...
BP3.747e-02AtTCP11 EFR AT5G07800 AT5G04550 OEC33 AtIDD2 LKR VEL1 AT3G23900 ATCCS GF14 AT-PHH1 AtPIF4 CID1
GO:0007623
circadian rhythm
BP3.778e-02AtTCP11 APRR5 ARR5 VEL1 A/N-InvC AT3G01310 AT-PHH1 AtPIF4
GO:0048511
rhythmic process
BP3.778e-02AtTCP11 APRR5 ARR5 VEL1 A/N-InvC AT3G01310 AT-PHH1 AtPIF4
GO:0009805
coumarin biosynthetic process
BP3.854e-02CPH PDH-E1 4CL2 AtHMGR1
GO:0048442
sepal development
BP3.877e-02WYR AT5G48360 AT4G30130 JAG AT1G26540
GO:0048464
flower calyx development
BP3.877e-02WYR AT5G48360 AT4G30130 JAG AT1G26540
GO:0019400
alditol metabolic process
BP4.027e-02AtGDPD2 GLI1 AT1G18460
GO:0006576
cellular biogenic amine metabolic proces...
BP4.098e-02FPS1 CPH GDH2 PDH-E1 CYP702A8 AT1G51570 ATVLN2
GO:0048366
leaf development
BP4.117e-02AtTCP11 ANAC098 AT5G48360 AGD3 AT5G02160 ATFER1 OEC33 AtIDD2 ATDGK7 AtKTI12 ALPHA JAG AT1G27640 CDC27b
GO:0006096
glycolytic process
BP4.157e-02PKP-BETA1 TUB6 AtCOR47 AT1G18270 AT-E1 GF14 ATHH2 CID1
GO:0015698
inorganic anion transport
BP4.157e-02AtGDPD2 AT5G07080 ATCAX4 ABCC1 ALDH1A AT1G63010 ATBOR4 PHT4;2 ZIP3 AT2G03240
GO:0009749
response to glucose
BP4.215e-02AtbZIP63 ATBZIP9 ATCIPK8 ABI4
GO:0009804
coumarin metabolic process
BP4.215e-02CPH PDH-E1 4CL2 AtHMGR1
GO:0009733
response to auxin
BP4.336e-02FQR1 DFL1 AT5G38895 AGD3 ATCAX4 ABCB19 AT3G12830 IAA16 GH3.17 IAA34 TTL3 DSPTP1E AtPIF4 CDC27b BAS1
GO:0042221
response to chemical
BP4.531e-02ARR11 COP9 AtbZIP63 AtTCP11 EFR BEE2 ATBZIP9 AT5G62210 FQR1 DFL1 PKP-BETA1 AFB5 AT5G38895 TUB8 GDH1 AGD3 TUB6 GDH2 EMS1 AT5G07080 ATCAX4 ATFER1 AT3G59350 CSY2 AT3G52740 OEC33 AtIDD2 MPT2 ARR5 HERK1 AT4G38540 PIRL4 ATSEN1 LKR AT4G30130 ATCIPK8 ATEGY3 ABCC1 DIN4 ABCB19 CHR40 AtDJ1A AT-POX AT3G12830 ACT2 ALDH1A AT3G18060 AT3G15450 BCE2 ATMFP2 LON3 IAA16 AT-SO ATBSMT1 PIP1;3 ATCCS ASG5 AtCOR47 GH3.17 ATHPR1 GLI1 AT1G32460 IAA34 ATBETAFRUCT4 AT1G26540 AT1G14550 RAP2.12 ATBOR4 AT-E1 AT2G31370 ABI4 GF14 TTL3 AT-PHH1 DSPTP1E THA1 AtPIF4 CDC27b ATHAP3 CIPK3 ZIP3 AT2G43320 ATCDF1 AT2G26110 ATHH2 ACR9 CID1 AT2G33710 AT2G26690 BAS1
GO:0016052
carbohydrate catabolic process
BP4.678e-02BAM4 PKP-BETA1 TUB6 ATTRE1 AtCOR47 GLI1 AT1G18270 AT1G17160 AT-E1 ABI4 GF14 ATHH2 CID1
GO:0006875
cellular metal ion homeostasis
BP4.779e-02ATCAX4 ATFER1 ATCCS AT-PHH1 ATCDF1
GO:0071370
cellular response to gibberellin stimulu...
BP4.779e-02BEE2 TUB6 PIRL4 ASG5 ATBETAFRUCT4
GO:0048441
petal development
BP4.889e-02WYR AT5G48360 AGL1 AT4G30130 JAG AT1G26540
GO:0048465
corolla development
BP4.889e-02WYR AT5G48360 AGL1 AT4G30130 JAG AT1G26540
GO:0009164
nucleoside catabolic process
BP5.003e-02AT4G29570 AT4G29610
GO:0009251
glucan catabolic process
BP5.003e-02BAM4 ABI4
GO:0042454
ribonucleoside catabolic process
BP5.003e-02AT4G29570 AT4G29610
GO:0044247
cellular polysaccharide catabolic proces...
BP5.003e-02BAM4 ABI4
GO:0046890
regulation of lipid biosynthetic process
BP5.003e-02ATCCH1 WRI4
GO:0009628
response to abiotic stimulus
BP5.102e-02COP9 AT5G62210 AT5G61510 FQR1 FPS1 AT5G38895 APRR5 TUB8 ATVAMP714 GDH1 TUB6 ASG2 GDH2 ATFER1 AT3G52740 OEC33 MPT2 ARR5 AT3G46680 ATSEN1 HCF244 LKR VEL1 CIP7 ATCCH1 BRCA2(IV) ATEGY3 DIN4 ABCB19 AT-POX ATEHD1 ACT2 NAI2 AT3G17740 4CL2 AQP1 AT3G18060 BCE2 LON3 IAA16 AT3G11600 PIP1;3 AtCOR47 SNRK2-10 AtHMGR1 ATHPR1 GLI1 GLX2-1 ATBETAFRUCT4 AT1G63010 SPA4 AT1G14550 AtCPB AT1G01800 ATVPS53 AtJ8 ATKAS2 RAP2.12 ABI4 GF14 TTL3 AT-PHH1 AtPIF4 AT2G16660 CDC27b ATHAP3 AT2G43320 ATHH2 CID1 FDH BAS1
GO:0048444
floral organ morphogenesis
BP5.223e-02WYR AT5G48360 AGD3 EMS1 AT4G30130 AT2G33640 AT1G29570 JAG AT1G26540 AT2G16020
GO:0048563
post-embryonic organ morphogenesis
BP5.223e-02WYR AT5G48360 AGD3 EMS1 AT4G30130 AT2G33640 AT1G29570 JAG AT1G26540 AT2G16020
GO:0048645
organ formation
BP5.416e-02WYR ANAC098 AT5G48360 AGD3 EMS1 AT4G30130 AT2G33640 ABCB19 JAG AT1G26540
GO:0048446
petal morphogenesis
BP5.443e-02WYR AT5G48360 AT4G30130 JAG AT1G26540
GO:0035303
regulation of dephosphorylation
BP5.759e-02AtTCP11 OEC33 AtIDD2 ATHPR1 ATXRCC1 AtPIF4
GO:0006778
porphyrin-containing compound metabolic ...
BP5.794e-02ATPTR1 CIP7 HO4 AT-SO ATKAS2 AT1G73040 ALDH6B2
GO:0033013
tetrapyrrole metabolic process
BP5.794e-02ATPTR1 CIP7 HO4 AT-SO ATKAS2 AT1G73040 ALDH6B2
GO:0044106
cellular amine metabolic process
BP5.794e-02FPS1 CPH GDH2 PDH-E1 CYP702A8 AT1G51570 ATVLN2