GOID	TERM	ONTOLOGY	pValue	Genes
GO:0006354	DNA-templated transcription, elongation	BP	6.59864003355135e-26	AT2G18400//ADK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0015979	photosynthesis	BP	2.02019217751736e-25	PSAD-2//OE23//PSAO//GAPA-2//CP24//AB180//AB140//RBCS1A//LHCB4.3//PSRP2//FAD6//PDE334//LHCB4.1//RBCS3B//NdhN//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSBJ//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0019684	photosynthesis, light reaction	BP	1.24918458306463e-23	PSAD-2//OE23//PSAO//GAPA-2//CP24//AB180//AB140//LHCB4.3//PSRP2//FAD6//PDE334//LHCB4.1//NdhN//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//PETA//PSAJ//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0006091	generation of precursor metabolites and ...	BP	8.29589653737322e-20	PSAD-2//OE23//PSAO//GAPA-2//CP24//AB180//AB140//ACO2//LHCB4.3//ATPMM//PSRP2//FAD6//PDE334//LHCB4.1//NdhN//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0098542	defense response to other organism	BP	1.29360049752212e-11	ACO4//OE23//PGDH//ATCLH1//AIN1//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//FMA//CYP71B15//ATPCA//RDR6//TRP3//ATGSTF2//AT4G16260//AT4G23670//PDE334//AtTGG1//ATH3//LCR77//ATERF-2//NdhN//ATPA//ATPB//NDHA
GO:0009765	photosynthesis, light harvesting	BP	6.6776379545681e-11	PSAO//CP24//AB180//AB140//LHCB4.3//LHCB4.1//PSBI//PSBD//PSAB//PSBH
GO:0050832	defense response to fungus	BP	7.82920012791885e-11	ACO4//OE23//ATCLH1//CYP71A13//HEL//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//CYP71B15//ATPCA//TRP3//ATGSTF2//AT4G16260//PDE334//ATH3//NdhN//ATPB
GO:0006952	defense response	BP	1.36430893692156e-10	ACO4//OE23//PGDH//ATCLH1//AT1G23130//AIN1//AT1G63750//MLP28//AT1G74640//AT2G04400//PDF1.3//CYP71A13//SIB2//HEL//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//FMA//AT3G26450//CYP71B15//ATPCA//RDR6//TRP3//ATGSTF2//AT4G16260//AT4G23670//PDE334//ATNADP-ME2//AtTGG1//AT5G38850//ATH3//AT5G43740//LCR77//PDF1.2c//ATERF-2//AT5G47260//NdhN//ATPA//ATPB//NDHA
GO:0044237	cellular metabolic process	BP	1.6161442413888e-10	PSAD-2//AT1G04800//ACO4//OE23//PSAO//GAPA-2//APK2A//DECOY//CP24//ATCCR1//PGDH//CRK1//ATCLH1//ASK4//DRT112//WAK5//Cpn60beta4//AT1G29070//AB180//AB140//AtTRM9//ARF20//RGE1//AT1G54220//AIN1//GES//ACO2//RPF3//AtLIG6//RBCS1A//AT1G68260//AT1G74640//ATLUP1//EMB1047//AT1G80640//XERICO//AT2G04400//AT2G13720//AT2G13960//AT2G18400//CYCB1;4//ARR13//AT103-1A//CYP71A13//NF-YA4//GTE01//AT2G35795//AT2G37240//ADK//NATA1//LHCB4.3//ATCKX1//AT2G43590//AT2G45720//ATPMM//ATMPK12//ATWRKY43//HEL//AT3G09250//AT3G09440//ATHCHIB//ATEBP//AAE7//RFC3//ATCAD4//CYCP2;1//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//HIRA//AtXTH31//AT3G49070//ATPCA//RDR6//PSRP2//CP33//TRP3//PSRP5//EDA33//ATGSTF2//AT4G08990//IAGLU//AT4G23670//AT4G24350//ATFSD1//AT4G27300//AT4G29090//FAD6//PDE334//PLAT1//LHCB4.1//ARR21//TPPI//ATNADP-ME2//SSP5//AT5G12090//GASA4//AT5G16240//AT5G23650//AtTGG1//RBCS3B//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//ATERF-2//AT5G47260//EMB2812//CPI1//DYAD//AT5G53150//PDC2//NdhN//ATUBC7//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AGL31//AT5G65860//RLK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSBJ//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0006955	immune response	BP	1.95575004241895e-10	ACO4//OE23//PGDH//ATCLH1//AIN1//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//ATHCHIB//AT3G15356//FMA//CYP71B15//ATPCA//RDR6//TRP3//AT4G16260//PDE334//ATNADP-ME2//LCR77//ATERF-2//NdhN//ATPB
GO:0045087	innate immune response	BP	1.95575004241895e-10	ACO4//OE23//PGDH//ATCLH1//AIN1//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//ATHCHIB//AT3G15356//FMA//CYP71B15//ATPCA//RDR6//TRP3//AT4G16260//PDE334//ATNADP-ME2//LCR77//ATERF-2//NdhN//ATPB
GO:0009607	response to biotic stimulus	BP	7.8403149203912e-10	ACO4//OE23//PGDH//ATCLH1//AIN1//GES//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//FMA//CYP71B15//ATPCA//RDR6//TRP3//ATGSTF2//AT4G16260//AT4G23670//PDE334//AtTGG1//ATH3//LCR77//ATERF-2//NdhN//ATPA//ATPB//NDHA
GO:0043207	response to external biotic stimulus	BP	7.8403149203912e-10	ACO4//OE23//PGDH//ATCLH1//AIN1//GES//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//FMA//CYP71B15//ATPCA//RDR6//TRP3//ATGSTF2//AT4G16260//AT4G23670//PDE334//AtTGG1//ATH3//LCR77//ATERF-2//NdhN//ATPA//ATPB//NDHA
GO:0051707	response to other organism	BP	7.8403149203912e-10	ACO4//OE23//PGDH//ATCLH1//AIN1//GES//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//FMA//CYP71B15//ATPCA//RDR6//TRP3//ATGSTF2//AT4G16260//AT4G23670//PDE334//AtTGG1//ATH3//LCR77//ATERF-2//NdhN//ATPA//ATPB//NDHA
GO:0050896	response to stimulus	BP	2.35482370840514e-09	ACO4//OE23//PRIN2//AT1G11270//CP24//ATCCR1//PGDH//ATCLH1//DRT112//AT1G23130//KDR//ARF20//AT1G54220//AIN1//GES//ACO2//AT1G63750//AtLIG6//RBCS1A//AT-EXP1//MLP28//AtCPB//AT1G74640//GASA6//ATEXT1//XERICO//AT2G04400//AT2G21340//PDF1.3//ARR13//AT103-1A//CYP71A13//ATGRP23//NF-YA4//AT2G38380//NATA1//LHCB4.3//AT2G41090//SIB2//ATPMM//ATMPK12//HEL//AT3G09250//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//AT3G16670//ATEBP//ATCAD4//AT3G23550//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//ATPCA//RDR6//DIN11//TRP3//AT3G54800//ATGSTF2//AT4G02940//AT4G16260//AT4G23670//AT4G24350//ATFSD1//FAD6//PDE334//AT4G32530//PLAT1//LHCB4.1//ARR21//ATNADP-ME2//GASA4//DGR2//AtTGG1//RBCS3B//RBCS1B//AT5G38850//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//AT5G43740//LCR77//PDF1.2c//ATERF-2//AT5G47260//CPI1//DYAD//PDC2//ATOXS3//NdhN//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//CLEL//AGL31//RLK//ATPA//NDHJ//ATPB//RBCL//PETB//NDHA
GO:0002376	immune system process	BP	2.91114918206555e-09	ACO4//OE23//PGDH//ATCLH1//AIN1//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//ATHCHIB//AT3G15356//FMA//CYP71B15//ATPCA//RDR6//TRP3//AT4G16260//PDE334//ATNADP-ME2//LCR77//ATERF-2//NdhN//ATPB
GO:0009628	response to abiotic stimulus	BP	3.8545773639361e-09	OE23//PRIN2//AT1G11270//CP24//ATCCR1//DRT112//KDR//AIN1//GES//ACO2//RBCS1A//AT-EXP1//AtCPB//GASA6//XERICO//NF-YA4//AT2G38380//LHCB4.3//AT2G41090//ATPMM//HEL//AT3G09440//ATEBP//ATCAD4//AOC2//AT3G26450//CYP71B15//ATPCA//DIN11//TRP3//ATGSTF2//AT4G02940//AT4G16260//AT4G23670//ATFSD1//FAD6//PDE334//AT4G32530//LHCB4.1//ATNADP-ME2//DGR2//RBCS3B//RBCS1B//ATH3//CPI1//PDC2//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//CLEL//AGL31//ATPA//ATPB
GO:0006950	response to stress	BP	4.78772457875629e-09	ACO4//OE23//AT1G11270//CP24//ATCCR1//PGDH//ATCLH1//AT1G23130//AIN1//GES//ACO2//AT1G63750//AtLIG6//RBCS1A//MLP28//AtCPB//AT1G74640//ATEXT1//XERICO//AT2G04400//PDF1.3//AT103-1A//CYP71A13//NF-YA4//AT2G38380//SIB2//ATPMM//HEL//AT3G09250//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//AT3G16670//ATEBP//FMA//AOC2//AT3G26450//CYP71B15//ATPCA//RDR6//DIN11//TRP3//ATGSTF2//AT4G16260//AT4G23670//AT4G24350//ATFSD1//PDE334//AT4G32530//PLAT1//ATNADP-ME2//AtTGG1//AT5G38850//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//AT5G43740//LCR77//PDF1.2c//ATERF-2//AT5G47260//PDC2//ATOXS3//NdhN//AGL31//ATPA//NDHJ//ATPB//NDHA
GO:0009620	response to fungus	BP	5.35779354723245e-09	ACO4//OE23//ATCLH1//GES//CYP71A13//HEL//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//CYP71B15//ATPCA//TRP3//ATGSTF2//AT4G16260//PDE334//ATH3//NdhN//ATPB
GO:0010207	photosystem II assembly	BP	5.73278650649385e-09	OE23//PSAO//GAPA-2//PDE334//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//NDHA
GO:0009753	response to jasmonic acid	BP	1.12054308767949e-08	ACO4//OE23//ATCLH1//GES//AT1G74640//ATEXT1//AT103-1A//CYP71A13//NF-YA4//NATA1//ATEBP//FMA//CYP71B15//TRP3//PDE334//LCR77//ATERF-2
GO:0070271	protein complex biogenesis	BP	1.14902551975064e-08	OE23//PSAO//GAPA-2//HTA10//AIN1//RBCS1A//AtCPB//PDE334//ATNADP-ME2//RBCS3B//ATH3//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0009814	defense response, incompatible interacti...	BP	1.60891811400277e-08	ACO4//OE23//ATCLH1//AT1G74640//AT2G04400//CYP71A13//SIB2//HEL//ATHCHIB//AT3G15356//FMA//CYP71B15//TRP3//AT4G16260//PDE334//LCR77//NdhN//ATPB
GO:0009617	response to bacterium	BP	2.71980309253721e-08	ACO4//OE23//PGDH//ATCLH1//GES//AT1G74640//AT2G04400//CYP71A13//HEL//FMA//CYP71B15//ATPCA//TRP3//ATGSTF2//AT4G23670//PDE334//ATERF-2//ATPA//NDHA
GO:0009767	photosynthetic electron transport chain	BP	3.2801609064468e-08	OE23//GAPA-2//PSRP2//FAD6//PSBA//PSBD//PSBC//PETA//PSBB//PETB//NDHA
GO:0071704	organic substance metabolic process	BP	3.43115891177239e-08	PSAD-2//AT1G04800//ACO4//OE23//PSAO//PRIN2//GAPA-2//APK2A//DECOY//CP24//ATCCR1//PGDH//CRK1//ATCLH1//ASK4//DRT112//WAK5//Cpn60beta4//AT1G29070//AtTRM9//ARF20//RGE1//AT1G54010//AT1G54220//AIN1//GES//ACO2//RPF3//AtLIG6//RBCS1A//AT1G68260//AT1G74640//ATLUP1//EMB1047//AT1G80640//AT2G03310//XERICO//AT2G04400//AT2G13720//AT2G13960//AT2G18400//CYCB1;4//ARR13//AT103-1A//CYP71A13//NF-YA4//GTE01//AT2G35795//AT2G37240//ADK//NATA1//LHCB4.3//ATCKX1//AT2G43590//AtGH9B9//AtGH9B11//AtGH9B12//AT2G45720//ATPMM//ATMPK12//ATWRKY43//HEL//AT3G09250//AT3G09440//ATHCHIB//ATEBP//AAE7//RFC3//ATCAD4//CYCP2;1//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//HIRA//AtXTH31//AT3G49070//RDR6//PSRP2//CP33//TRP3//PSRP5//EDA33//AT4G08990//IAGLU//AT4G16640//AT4G23670//AT4G24350//AT4G27300//AT4G29090//FAD6//PDE334//PLAT1//LHCB4.1//ARR21//TPPI//ATNADP-ME2//SSP5//AT5G12090//GASA4//AT5G16240//AT5G23650//AtTGG1//RBCS3B//RBCS1B//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//AT5G42930//ATH3//ATERF-2//AT5G47260//EMB2812//CPI1//DYAD//AT5G53150//PDC2//NdhN//ATUBC7//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AGL31//AT5G65860//RLK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0042742	defense response to bacterium	BP	3.72514650755384e-08	ACO4//OE23//PGDH//ATCLH1//AT2G04400//CYP71A13//HEL//CYP71B15//ATPCA//TRP3//ATGSTF2//AT4G23670//PDE334//ATERF-2//ATPA//NDHA
GO:0022900	electron transport chain	BP	4.08078150359437e-08	OE23//GAPA-2//PSRP2//FAD6//PSBA//PSBD//PSBC//PETA//PSBB//PETB//NDHD//NDHE//NDHA
GO:0009987	cellular process	BP	5.61247963185988e-08	PSAD-2//AT1G04800//ACO4//OE23//PSAO//GAPA-2//APK2A//DECOY//CP24//ATCCR1//PGDH//CRK1//ATCLH1//ASK4//DRT112//WAK5//Cpn60beta4//AT1G29070//AB180//AB140//AtTRM9//ARF20//RGE1//HTA10//AT1G54220//AIN1//GES//ACO2//RPF3//AT1G63750//AT1G65550//ATSUC7//AtLIG6//RBCS1A//AT1G68260//AT-EXP1//AtCPB//AT1G74640//GASA6//ATLUP1//EMB1047//AT1G80640//XERICO//AT2G04400//AT2G13720//AT2G13960//ATSUC8//AT2G18400//AT2G21340//CYCB1;4//ARR13//ATEXO70H5//AT103-1A//CYP71A13//NF-YA4//GTE01//AT2G35795//AT2G37240//ADK//NATA1//LHCB4.3//ATEXP8//AT2G41090//ATCKX1//AT2G43150//AT2G43590//AT2G45720//ATPMM//ATMPK12//ATWRKY43//HEL//AT3G09250//AT3G09440//ATHCHIB//ATEBP//AAE7//RFC3//ATCAD4//CYCP2;1//AT3G23550//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//AT3G28780//HIRA//AtXTH31//AT3G49070//ATPCA//RDR6//DIN11//PSRP2//CP33//TRP3//AT3G54800//PSRP5//EDA33//ATGSTF2//AT4G08990//IAGLU//AT4G23670//AT4G24350//ATFSD1//AT4G27300//AT4G29090//FAD6//PDE334//AT4G32530//PLAT1//LHCB4.1//ATSUC9//ARR21//TPPI//ATNADP-ME2//SSP5//AT5G12090//GASA4//AT5G16240//AT5G23650//AtENODL13//AT5G25420//AtTGG1//RBCS3B//AT5G38850//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//ATERF-2//AT5G47260//EMB2812//CPI1//DYAD//AT5G53150//PDC2//NdhN//ATUBC7//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//CLEL//AGL31//AT5G65860//RLK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSBJ//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA//YCF1.2
GO:0009605	response to external stimulus	BP	6.75245056715503e-08	ACO4//OE23//PGDH//ATCLH1//DRT112//AIN1//GES//AT1G74640//AT2G04400//CYP71A13//AT2G41090//SIB2//HEL//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//FMA//CYP71B15//ATPCA//RDR6//DIN11//TRP3//ATGSTF2//AT4G16260//AT4G23670//PDE334//AtTGG1//ATH3//LCR77//ATERF-2//CPI1//NdhN//CLEL//ATPA//NDHJ//ATPB//NDHA
GO:0009725	response to hormone	BP	8.68879144133802e-08	ACO4//OE23//ATCLH1//ARF20//AIN1//GES//ACO2//AT-EXP1//AT1G74640//GASA6//ATEXT1//XERICO//ARR13//AT103-1A//CYP71A13//ATGRP23//NF-YA4//NATA1//ATMPK12//HEL//ATHCHIB//ATEBP//AT3G23550//FMA//CYP71B15//DIN11//TRP3//PDE334//ARR21//GASA4//AtTGG1//ATH3//LCR77//ATERF-2//RBCL
GO:0080134	regulation of response to stress	BP	1.2325774573294e-07	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//SIB2//FMA//CYP71B15//ATPCA//TRP3//PDE334//ATNADP-ME2//ATERF-2//AGL31
GO:0009719	response to endogenous stimulus	BP	1.39609618172486e-07	ACO4//OE23//ATCLH1//ARF20//AIN1//GES//ACO2//AT-EXP1//AT1G74640//GASA6//ATEXT1//XERICO//ARR13//AT103-1A//CYP71A13//ATGRP23//NF-YA4//NATA1//ATMPK12//HEL//ATHCHIB//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//AT3G23550//FMA//CYP71B15//DIN11//TRP3//PDE334//ARR21//GASA4//AtTGG1//ATH3//LCR77//ATERF-2//RBCL
GO:0006461	protein complex assembly	BP	1.7203182595177e-07	OE23//PSAO//GAPA-2//HTA10//AIN1//AtCPB//PDE334//ATNADP-ME2//ATH3//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0044272	sulfur compound biosynthetic process	BP	2.22636241259306e-07	OE23//PSAO//CP24//DRT112//AT1G54220//ACO2//AT1G68260//CYP71A13//AT3G26450//CYP71B15//ATMDAR4//AT4G23670//FAD6//PDE334//GASA4//NDHD//NDHE
GO:0002682	regulation of immune system process	BP	2.24545010690532e-07	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//ATPCA//TRP3//PDE334//ATNADP-ME2//ATERF-2
GO:0045088	regulation of innate immune response	BP	2.24545010690532e-07	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//ATPCA//TRP3//PDE334//ATNADP-ME2//ATERF-2
GO:0050776	regulation of immune response	BP	2.24545010690532e-07	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//ATPCA//TRP3//PDE334//ATNADP-ME2//ATERF-2
GO:0065003	macromolecular complex assembly	BP	2.69059431689724e-07	OE23//PSAO//GAPA-2//HTA10//AIN1//AtCPB//PDE334//ATNADP-ME2//ATH3//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0044085	cellular component biogenesis	BP	3.42987599496772e-07	OE23//PSAO//GAPA-2//AT1G29070//HTA10//AIN1//RBCS1A//AtCPB//LHCB4.3//AT2G45720//RFC3//AT3G28780//AtXTH31//CP33//PDE334//LHCB4.1//ATNADP-ME2//RBCS3B//ATH3//CPI1//NdhN//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//PSBA//PSBK//PSBI//ATPA//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//PETB//YCF5//NDHA
GO:0031347	regulation of defense response	BP	3.63080976406226e-07	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//SIB2//FMA//CYP71B15//ATPCA//TRP3//PDE334//ATNADP-ME2//ATERF-2
GO:0006790	sulfur compound metabolic process	BP	5.02490628927109e-07	OE23//PSAO//CP24//DRT112//AT1G54220//ACO2//AT1G68260//CYP71A13//AT3G26450//CYP71B15//ATMDAR4//AT4G23670//FAD6//PDE334//GASA4//AtTGG1//CPI1//NDHD//NDHE
GO:0010363	regulation of plant-type hypersensitive ...	BP	5.61522946821698e-07	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0071822	protein complex subunit organization	BP	7.49842286885532e-07	OE23//PSAO//GAPA-2//HTA10//AIN1//AtCPB//PDE334//ATNADP-ME2//ATH3//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0043623	cellular protein complex assembly	BP	7.7049701775075e-07	OE23//PSAO//GAPA-2//AIN1//AtCPB//PDE334//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0009626	plant-type hypersensitive response	BP	1.00771124860664e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0034050	host programmed cell death induced by sy...	BP	1.00771124860664e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0044260	cellular macromolecule metabolic process	BP	1.0921439735722e-06	PSAD-2//AT1G04800//OE23//PSAO//GAPA-2//APK2A//DECOY//CP24//CRK1//ATCLH1//ASK4//DRT112//WAK5//Cpn60beta4//AT1G29070//AtTRM9//ARF20//RGE1//AIN1//RPF3//AtLIG6//AT1G74640//EMB1047//AT1G80640//AT2G13720//AT2G13960//AT2G18400//CYCB1;4//ARR13//NF-YA4//GTE01//AT2G35795//ADK//LHCB4.3//ATCKX1//AT2G43590//AT2G45720//ATPMM//ATMPK12//ATWRKY43//HEL//AT3G09250//AT3G09440//ATHCHIB//ATEBP//RFC3//CYCP2;1//FMA//RPL12//HIRA//AtXTH31//AT3G49070//RDR6//PSRP5//EDA33//AT4G08990//AT4G27300//AT4G29090//FAD6//PDE334//LHCB4.1//ARR21//ATNADP-ME2//SSP5//AT5G12090//AT5G23650//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//ATERF-2//AT5G47260//EMB2812//DYAD//AT5G53150//PDC2//NdhN//ATUBC7//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//AGL31//RLK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0080135	regulation of cellular response to stres...	BP	1.15917770929757e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0006612	protein targeting to membrane	BP	1.3303165671424e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0043067	regulation of programmed cell death	BP	1.3303165671424e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0043436	oxoacid metabolic process	BP	1.34880286165199e-06	ACO4//OE23//PSAO//GAPA-2//CP24//PGDH//DRT112//Cpn60beta4//AT1G54220//GES//ACO2//AT1G68260//XERICO//AT2G04400//AT103-1A//CYP71A13//ADK//NATA1//ATPMM//AAE7//RFC3//AOC2//AT3G26450//CYP71B15//ATMDAR4//PSRP2//CP33//TRP3//IAGLU//AT4G23670//FAD6//PDE334//PLAT1//ATNADP-ME2//GASA4//AT5G16240//AtTGG1//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//RPS14//NDHD//NDHE
GO:0006082	organic acid metabolic process	BP	1.39318121378912e-06	ACO4//OE23//PSAO//GAPA-2//CP24//PGDH//DRT112//Cpn60beta4//AT1G54220//GES//ACO2//AT1G68260//XERICO//AT2G04400//AT103-1A//CYP71A13//ADK//NATA1//ATPMM//AAE7//RFC3//AOC2//AT3G26450//CYP71B15//ATMDAR4//PSRP2//CP33//TRP3//IAGLU//AT4G23670//FAD6//PDE334//PLAT1//ATNADP-ME2//GASA4//AT5G16240//AtTGG1//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//RPS14//NDHD//NDHE
GO:0044281	small molecule metabolic process	BP	1.58218074342538e-06	ACO4//OE23//PSAO//GAPA-2//CP24//PGDH//DRT112//Cpn60beta4//AT1G54220//GES//ACO2//AT1G68260//ATLUP1//XERICO//AT2G04400//AT103-1A//CYP71A13//NF-YA4//AT2G37240//ADK//NATA1//ATPMM//AAE7//RFC3//AOC2//AT3G26450//CYP71B15//ATMDAR4//PSRP2//CP33//TRP3//IAGLU//AT4G23670//AT4G24350//FAD6//PDE334//PLAT1//ATNADP-ME2//GASA4//AT5G16240//AtTGG1//ATH3//CPI1//NdhN//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AT5G65860//ATPA//ATPF//RPS14//ATPE//ATPB//NDHD//NDHE
GO:0034622	cellular macromolecular complex assembly	BP	1.64851194406188e-06	OE23//PSAO//GAPA-2//HTA10//AIN1//AtCPB//PDE334//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0009867	jasmonic acid mediated signaling pathway	BP	1.74041275796266e-06	ACO4//OE23//ATCLH1//GES//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATERF-2
GO:0071395	cellular response to jasmonic acid stimu...	BP	1.74041275796266e-06	ACO4//OE23//ATCLH1//GES//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATERF-2
GO:0046686	response to cadmium ion	BP	1.7851275475432e-06	DRT112//AT1G54220//ACO2//NF-YA4//ATPMM//AT3G09440//ATHCHIB//ATMDAR4//ATGSTF2//AT4G23670//ATFSD1//AT4G32530//ATNADP-ME2//ATOXS3//RBCL
GO:0035304	regulation of protein dephosphorylation	BP	1.79063569664017e-06	PSAD-2//PSAO//GAPA-2//CP24//ATCLH1//AT1G74640//FMA//FAD6//PDE334
GO:1901576	organic substance biosynthetic process	BP	1.85330973808905e-06	AT1G04800//ACO4//OE23//PSAO//CP24//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AT1G29070//ARF20//RGE1//AT1G54220//AIN1//GES//ACO2//AtLIG6//AT1G68260//AT1G74640//ATLUP1//AT2G03310//AT2G04400//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//AT2G37240//ADK//ATCKX1//AT2G45720//ATPMM//ATWRKY43//ATEBP//RFC3//ATCAD4//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//HIRA//AT3G49070//PSRP2//CP33//TRP3//PSRP5//EDA33//AT4G23670//AT4G29090//FAD6//PDE334//PLAT1//ARR21//TPPI//ATNADP-ME2//GASA4//AT5G16240//AT5G23650//ATERF-2//AT5G47260//EMB2812//CPI1//PDC2//NdhN//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0010941	regulation of cell death	BP	1.98426016260162e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0006807	nitrogen compound metabolic process	BP	2.51767322039732e-06	OE23//PSAO//GAPA-2//CP24//PGDH//ATCLH1//DRT112//Cpn60beta4//AtTRM9//ARF20//RGE1//AIN1//ACO2//RPF3//AtLIG6//AT1G68260//AT1G74640//AT2G04400//AT2G13720//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//ADK//NATA1//LHCB4.3//ATCKX1//ATWRKY43//AT3G09250//ATEBP//FMA//AT3G26450//CYP71B15//HIRA//RDR6//TRP3//EDA33//AT4G08990//IAGLU//AT4G23670//AT4G24350//AT4G29090//FAD6//PDE334//LHCB4.1//ARR21//ATNADP-ME2//GASA4//AT5G23650//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATERF-2//EMB2812//DYAD//NdhN//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0035303	regulation of dephosphorylation	BP	2.54434450318732e-06	PSAD-2//PSAO//GAPA-2//CP24//ATCLH1//AT1G74640//FMA//FAD6//PDE334
GO:0031399	regulation of protein modification proce...	BP	2.9048930750975e-06	PSAD-2//PSAO//GAPA-2//CP24//ATCLH1//AT1G74640//CYCB1;4//CYCP2;1//FMA//FAD6//PDE334
GO:0019220	regulation of phosphate metabolic proces...	BP	3.28561072621239e-06	PSAD-2//PSAO//GAPA-2//CP24//ATCLH1//AT1G74640//CYCB1;4//CYCP2;1//FMA//FAD6//PDE334
GO:0051174	regulation of phosphorus metabolic proce...	BP	3.28561072621239e-06	PSAD-2//PSAO//GAPA-2//CP24//ATCLH1//AT1G74640//CYCB1;4//CYCP2;1//FMA//FAD6//PDE334
GO:0072657	protein localization to membrane	BP	3.28561072621239e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0090150	establishment of protein localization to...	BP	3.28561072621239e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0009069	serine family amino acid metabolic proce...	BP	3.49550477981387e-06	OE23//PSAO//CP24//PGDH//DRT112//ACO2//AT1G68260//AT3G26450//AT4G23670//FAD6//GASA4//NDHE
GO:0010243	response to organonitrogen compound	BP	3.70931012048483e-06	ACO4//OE23//AIN1//XERICO//CYP71A13//ATMPK12//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//CYP71B15//TRP3//PDE334//ATERF-2
GO:0009755	hormone-mediated signaling pathway	BP	3.79266746105677e-06	ACO4//OE23//ATCLH1//AIN1//GES//AT1G74640//GASA6//ARR13//CYP71A13//ATHCHIB//ATEBP//FMA//CYP71B15//TRP3//PDE334//ARR21//GASA4//ATH3//ATERF-2
GO:0044763	single-organism cellular process	BP	3.9059148422643e-06	PSAD-2//ACO4//OE23//PSAO//GAPA-2//DECOY//CP24//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AT1G54220//AIN1//GES//ACO2//AT1G63750//AT1G65550//ATSUC7//AtLIG6//AT1G68260//AT-EXP1//AtCPB//AT1G74640//GASA6//ATLUP1//XERICO//AT2G04400//ATSUC8//AT2G21340//CYCB1;4//ARR13//ATEXO70H5//AT103-1A//CYP71A13//NF-YA4//GTE01//AT2G37240//ADK//NATA1//ATEXP8//AT2G41090//AT2G45720//ATPMM//ATMPK12//AT3G09250//ATHCHIB//ATEBP//AAE7//RFC3//ATCAD4//CYCP2;1//AT3G23550//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//AT3G28780//ATPCA//RDR6//DIN11//PSRP2//CP33//TRP3//AT3G54800//PSRP5//EDA33//ATGSTF2//IAGLU//AT4G23670//AT4G24350//ATFSD1//AT4G27300//FAD6//PDE334//AT4G32530//PLAT1//ATSUC9//ARR21//TPPI//ATNADP-ME2//GASA4//AT5G16240//AtENODL13//AT5G25420//AtTGG1//AT5G38850//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//ATERF-2//EMB2812//CPI1//DYAD//NdhN//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//CLEL//AT5G65860//RLK//PSBA//ATPA//ATPF//PSBD//PSBC//RPS14//NDHJ//PSBG//ATPE//ATPB//PETA//PSBB//PETB//YCF5//NDHD//NDHE//NDHA//YCF1.2
GO:0072593	reactive oxygen species metabolic proces...	BP	4.04814047270255e-06	ACO4//OE23//ATCLH1//DRT112//AT1G74640//CYP71A13//FMA//CYP71B15//ATMDAR4//ATPCA//TRP3//ATFSD1//PDE334
GO:0006725	cellular aromatic compound metabolic pro...	BP	4.19329004972069e-06	ACO4//OE23//PSAO//GAPA-2//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AtTRM9//ARF20//RGE1//AIN1//ACO2//RPF3//AtLIG6//AT1G74640//AT2G04400//AT2G13720//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//ADK//LHCB4.3//ATCKX1//ATWRKY43//AT3G09250//ATEBP//ATCAD4//FMA//CYP71B15//HIRA//RDR6//TRP3//EDA33//AT4G08990//IAGLU//AT4G24350//AT4G29090//FAD6//PDE334//LHCB4.1//ARR21//ATNADP-ME2//AT5G23650//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATERF-2//EMB2812//DYAD//NdhN//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0009723	response to ethylene	BP	4.88690735044526e-06	AIN1//GES//ACO2//CYP71A13//NF-YA4//HEL//ATHCHIB//ATEBP//AT3G23550//CYP71B15//DIN11//LCR77//ATERF-2
GO:0010310	regulation of hydrogen peroxide metaboli...	BP	4.89622996283579e-06	ACO4//OE23//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334
GO:0071840	cellular component organization or bioge...	BP	4.99142606212531e-06	ACO4//OE23//PSAO//GAPA-2//DECOY//CP24//PGDH//ATCLH1//DRT112//AT1G29070//HTA10//AIN1//ACO2//RBCS1A//AT-EXP1//AtCPB//AT1G74640//EMB1047//AT2G13720//CYP71A13//LHCB4.3//ATEXP8//AT2G43150//AT2G45720//ATPMM//RFC3//FMA//CYP71B15//AT3G28780//AtXTH31//ATPCA//CP33//TRP3//PSRP5//EDA33//PDE334//AT4G32530//LHCB4.1//ATNADP-ME2//AtENODL13//RBCS3B//ATH3//CPI1//DYAD//PDC2//NdhN//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//PSBA//PSBK//PSBI//ATPA//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//PETB//YCF5//NDHA
GO:0000165	MAPK cascade	BP	5.71467172241929e-06	ACO4//OE23//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334
GO:0023014	signal transduction by phosphorylation	BP	5.71467172241929e-06	ACO4//OE23//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334
GO:0001101	response to acid chemical	BP	6.04907160410411e-06	ACO4//OE23//ATCLH1//AIN1//GES//ACO2//AT-EXP1//AT1G74640//GASA6//ATEXT1//XERICO//AT103-1A//CYP71A13//ATGRP23//NF-YA4//NATA1//ATMPK12//HEL//ATHCHIB//ATEBP//FMA//CYP71B15//TRP3//ATFSD1//PDE334//GASA4//AtTGG1//LCR77//ATERF-2//RBCL
GO:0022607	cellular component assembly	BP	7.08040008495549e-06	OE23//PSAO//GAPA-2//HTA10//AIN1//AtCPB//AT3G28780//CP33//PDE334//ATNADP-ME2//ATH3//CPI1//NdhN//PSBA//PSBK//PSBI//PSBD//PSBC//NDHJ//PETA//PSBB//PSBN//PSBH//YCF5//NDHA
GO:0006470	protein dephosphorylation	BP	7.62476095670171e-06	PSAD-2//PSAO//GAPA-2//CP24//ATCLH1//AT1G74640//FMA//FAD6//PDE334//SSP5
GO:0043170	macromolecule metabolic process	BP	7.80756815622169e-06	PSAD-2//AT1G04800//OE23//PSAO//PRIN2//GAPA-2//APK2A//DECOY//CP24//CRK1//ATCLH1//ASK4//DRT112//WAK5//Cpn60beta4//AT1G29070//AtTRM9//ARF20//RGE1//AIN1//RPF3//AtLIG6//AT1G74640//EMB1047//AT1G80640//AT2G13720//AT2G13960//AT2G18400//CYCB1;4//ARR13//NF-YA4//GTE01//AT2G35795//ADK//LHCB4.3//ATCKX1//AT2G43590//AT2G45720//ATPMM//ATMPK12//ATWRKY43//HEL//AT3G09250//AT3G09440//ATHCHIB//ATEBP//RFC3//CYCP2;1//FMA//RPL12//HIRA//AtXTH31//AT3G49070//RDR6//PSRP5//EDA33//AT4G08990//AT4G16640//AT4G27300//AT4G29090//FAD6//PDE334//LHCB4.1//ARR21//ATNADP-ME2//SSP5//AT5G12090//AT5G23650//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATH3//ATERF-2//AT5G47260//EMB2812//DYAD//AT5G53150//PDC2//NdhN//ATUBC7//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//AGL31//RLK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0009058	biosynthetic process	BP	8.49212863380402e-06	AT1G04800//ACO4//OE23//PSAO//CP24//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AT1G29070//ARF20//RGE1//AT1G54220//AIN1//GES//ACO2//AtLIG6//AT1G68260//AT1G74640//ATLUP1//AT2G03310//AT2G04400//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//AT2G37240//ADK//ATCKX1//AT2G45720//ATPMM//ATWRKY43//ATEBP//RFC3//ATCAD4//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//HIRA//AT3G49070//PSRP2//CP33//TRP3//PSRP5//EDA33//AT4G23670//AT4G29090//FAD6//PDE334//PLAT1//ARR21//TPPI//ATNADP-ME2//GASA4//AT5G16240//AT5G23650//ATERF-2//AT5G47260//EMB2812//CPI1//PDC2//NdhN//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0019752	carboxylic acid metabolic process	BP	8.72713061599525e-06	ACO4//OE23//PSAO//GAPA-2//CP24//PGDH//DRT112//Cpn60beta4//AT1G54220//GES//ACO2//AT1G68260//XERICO//AT2G04400//AT103-1A//CYP71A13//ADK//NATA1//ATPMM//AAE7//RFC3//AOC2//AT3G26450//CYP71B15//PSRP2//CP33//TRP3//IAGLU//AT4G23670//FAD6//PDE334//PLAT1//ATNADP-ME2//GASA4//AT5G16240//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//RPS14//NDHE
GO:0048583	regulation of response to stimulus	BP	8.80555472161785e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//SIB2//FMA//CYP71B15//ATPCA//TRP3//PDE334//ATNADP-ME2//ATERF-2//AGL31
GO:2000377	regulation of reactive oxygen species me...	BP	8.90976420057291e-06	ACO4//OE23//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334
GO:0012501	programmed cell death	BP	9.2028335872106e-06	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0044249	cellular biosynthetic process	BP	1.04164412512433e-05	AT1G04800//ACO4//OE23//PSAO//CP24//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AT1G29070//ARF20//RGE1//AT1G54220//AIN1//GES//ACO2//AtLIG6//AT1G68260//AT1G74640//ATLUP1//AT2G04400//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//ADK//ATCKX1//AT2G45720//ATPMM//ATWRKY43//ATEBP//RFC3//ATCAD4//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//HIRA//AT3G49070//PSRP2//CP33//TRP3//PSRP5//EDA33//AT4G23670//AT4G29090//FAD6//PDE334//PLAT1//ARR21//TPPI//GASA4//AT5G16240//AT5G23650//ATERF-2//AT5G47260//EMB2812//NdhN//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0051704	multi-organism process	BP	1.06130150176508e-05	ACO4//OE23//PGDH//ATCLH1//AIN1//GES//AT1G74640//AT2G04400//CYP71A13//GTE01//SIB2//HEL//AT3G09440//ATHCHIB//AT3G15356//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//FMA//CYP71B15//AT3G28780//ATPCA//RDR6//TRP3//ATGSTF2//AT4G16260//AT4G23670//AT4G27300//PDE334//AtTGG1//ATH3//LCR77//ATERF-2//NdhN//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ATPA//ATPB//NDHA
GO:0010033	response to organic substance	BP	1.06499607947901e-05	ACO4//OE23//ATCLH1//DRT112//ARF20//AIN1//GES//ACO2//AT-EXP1//AT1G74640//GASA6//ATEXT1//XERICO//ARR13//AT103-1A//CYP71A13//ATGRP23//NF-YA4//NATA1//ATMPK12//HEL//ATHCHIB//Lectin like protein whose expression is induced upon treatment with chitin oligomers.//ATEBP//AT3G23550//FMA//AT3G26450//CYP71B15//RDR6//DIN11//TRP3//AT4G23670//PDE334//LHCB4.1//ARR21//GASA4//AtTGG1//ATH3//LCR77//ATERF-2//RBCL//PETB
GO:0046483	heterocycle metabolic process	BP	1.11534438006278e-05	OE23//PSAO//GAPA-2//PGDH//ATCLH1//DRT112//Cpn60beta4//AtTRM9//ARF20//RGE1//AIN1//ACO2//RPF3//AtLIG6//AT1G74640//AT2G04400//AT2G13720//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//ADK//LHCB4.3//ATCKX1//ATWRKY43//AT3G09250//ATEBP//FMA//CYP71B15//HIRA//RDR6//TRP3//EDA33//AT4G08990//AT4G24350//AT4G29090//FAD6//PDE334//LHCB4.1//ARR21//ATNADP-ME2//AT5G23650//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATERF-2//EMB2812//DYAD//NdhN//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0008152	metabolic process	BP	1.13625689970005e-05	PSAD-2//AT1G04800//ACO4//OE23//PSAO//PRIN2//GAPA-2//APK2A//DECOY//CP24//ATCCR1//PGDH//CRK1//ATCLH1//ASK4//DRT112//WAK5//Cpn60beta4//AT1G29070//AB180//AB140//AtTRM9//ARF20//RGE1//AT1G54010//AT1G54220//AIN1//GES//AT1G62030//ACO2//RPF3//AtLIG6//RBCS1A//AT1G68260//AT1G74640//ATLUP1//EMB1047//AT1G80640//AT2G03310//XERICO//AT2G04400//AT2G13720//AT2G13960//AT2G18400//CYCB1;4//ARR13//AT103-1A//CYP71A13//NF-YA4//GTE01//AT2G35795//AT2G37240//ADK//AT2G38380//NATA1//LHCB4.3//ATCKX1//AT2G43590//AtGH9B9//AtGH9B11//AtGH9B12//AT2G45720//ATPMM//ATMPK12//ATWRKY43//HEL//AT3G09250//AT3G09440//ATHCHIB//ATEBP//AAE7//RFC3//ATCAD4//CYCP2;1//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RPL12//HIRA//AtXTH31//AT3G49070//ATPCA//RDR6//DIN11//PSRP2//CP33//TRP3//PSRP5//EDA33//ATGSTF2//AT4G02940//AT4G08990//IAGLU//AT4G16640//AT4G23670//AT4G24350//ATFSD1//AT4G27300//AT4G29090//FAD6//PDE334//PLAT1//LHCB4.1//ARR21//TPPI//ATNADP-ME2//SSP5//AT5G12090//GASA4//AT5G16240//AT5G23650//AtTGG1//RBCS3B//RBCS1B//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//AT5G42930//ATH3//ATERF-2//AT5G47260//EMB2812//CPI1//DYAD//AT5G53150//PDC2//NdhN//ATUBC7//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AGL31//AT5G65860//RLK//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//RPS14//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSBJ//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0016053	organic acid biosynthetic process	BP	1.13837926611488e-05	ACO4//OE23//PSAO//CP24//PGDH//DRT112//GES//ACO2//AT1G68260//AT2G04400//CYP71A13//ADK//ATPMM//AOC2//AT3G26450//CYP71B15//TRP3//AT4G23670//FAD6//PDE334//PLAT1//GASA4//AT5G16240//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//NDHE
GO:0046394	carboxylic acid biosynthetic process	BP	1.13837926611488e-05	ACO4//OE23//PSAO//CP24//PGDH//DRT112//GES//ACO2//AT1G68260//AT2G04400//CYP71A13//ADK//ATPMM//AOC2//AT3G26450//CYP71B15//TRP3//AT4G23670//FAD6//PDE334//PLAT1//GASA4//AT5G16240//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//NDHE
GO:1901360	organic cyclic compound metabolic proces...	BP	1.14013580647469e-05	ACO4//OE23//PSAO//GAPA-2//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AtTRM9//ARF20//RGE1//AIN1//ACO2//RPF3//AtLIG6//AT1G74640//ATLUP1//AT2G04400//AT2G13720//AT2G13960//AT2G18400//ARR13//CYP71A13//NF-YA4//GTE01//ADK//LHCB4.3//ATWRKY43//AT3G09250//ATEBP//ATCAD4//FMA//CYP71B15//HIRA//RDR6//TRP3//EDA33//AT4G08990//IAGLU//AT4G24350//AT4G29090//FAD6//PDE334//LHCB4.1//ARR21//ATNADP-ME2//AT5G23650//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//ATERF-2//EMB2812//CPI1//DYAD//NdhN//AGL31//AT5G65860//PSBA//MATK//PSBK//PSBI//ATPA//ATPF//PSBD//PSBC//YCF9//PSAB//PSAA//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//CLPP1//PSBB//PSBN//PSBH//PETB//YCF5//NDHD//NDHE//NDHA
GO:0008219	cell death	BP	1.15977960800649e-05	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//ATEBP//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0016265	death	BP	1.15977960800649e-05	ACO4//OE23//PGDH//ATCLH1//AT1G74640//CYP71A13//ATEBP//FMA//CYP71B15//TRP3//PDE334//ATNADP-ME2
GO:0031348	negative regulation of defense response	BP	1.17995828688776e-05	ACO4//OE23//ATCLH1//AT1G74640//CYP71A13//FMA//CYP71B15//TRP3//PDE334
GO:0044710	single-organism metabolic process	BP	1.18314107301753e-05	ACO4//OE23//PSAO//GAPA-2//DECOY//CP24//ATCCR1//PGDH//ATCLH1//DRT112//Cpn60beta4//AT1G54010//AT1G54220//AIN1//GES//AT1G62030//ACO2//AtLIG6//RBCS1A//AT1G68260//AT1G74640//ATLUP1//AT2G03310//XERICO//AT2G04400//AT103-1A//CYP71A13//NF-YA4//AT2G37240//ADK//AT2G38380//NATA1//ATCKX1//AT2G45720//ATPMM//AT3G09250//AT3G09440//AAE7//RFC3//ATCAD4//FMA//AOC2//AT3G26450//CYP71B15//ATMDAR4//RDR6//DIN11//PSRP2//CP33//TRP3//PSRP5//ATGSTF2//AT4G02940//IAGLU//AT4G23670//AT4G24350//ATFSD1//FAD6//PDE334//PLAT1//TPPI//ATNADP-ME2//GASA4//AT5G16240//AtTGG1//RBCS3B//RBCS1B//Represents a non-function pseudogene homologous to AtMSU81 (At4g30870).//AT5G42930//ATH3//ATERF-2//CPI1//DYAD//PDC2//NdhN//Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.//AT5G65860//PSBA//ATPA//ATPF//PSBD//PSBC//RPS14//NDHJ//PSBG//ATPE//ATPB//RBCL//PETA//PSAJ//PSBB//PETB//NDHD//NDHE//NDHA