4.0:Analysis result:Information of module
root cap pGL2 3h BL

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0001510
RNA methylation		BP6.554e-37NUP155 ATPWP2 AT1G18850 AT1G23280 AT1G25260 AT1G26880 AT1G27400 RACK1B ATNUC-L1 AT1G50920 AT1G52930 NOP56 TIM13 AT1G63660 IMP4 AT1G80750 AT2G20450 EDA27 AT2G21580 HDA13 AT2G28600 AT2G32060 AT2G32220 AT2G36170 RPL24A AT2G37190 HTA8 AT2G40010 RPL16A AT2G44860 AT2G45710 AT3G02220 AT3G03920 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06530 AT3G06700 NSN1 AT3G07750 AT3G10610 AT3G15460 AT3G16080 AT3G16780 APUM24 RACK1C AT3G18600 TOM40 AT3G21540 AT3G22660 AT3G23620 ATPHB4 CARA AT3G44590 ATHD2A AT3G46210 emb2474 ATEBP1 ROC2 AT3G58660 AT3G59540 AT3G60770 ARS27A YAO AT4G10450 AT4G12600 AT4G15640 AT4G15770 smB ATFKBP53 ATFIB2 AT4G25730 AT4G29390 AT4G29410 RUXF AT4G30800 AT5G02050 HD2C AT5G08180 AT5G13830 AT5G14600 AT5G15520 AT5G15550 TOZ AT5G20160 AT5G20290 ATHD2 AT5G27770 AT5G48240 AT5G48760 TIM8 ATFBR1 AT5G56670 AT5G59850 PRH75
GO:0009451
RNA modification		BP8.660e-22AT1G09800 NUP155 ATPWP2 ATECB2 AT1G18850 AT1G23280 AT1G25260 AT1G26880 AT1G27400 DYW1 RACK1B ATNUC-L1 AT1G50920 AT1G52930 NOP56 TIM13 AT1G63660 IMP4 AT1G80750 AT2G20450 EDA27 AT2G21580 HDA13 AT2G28600 AT2G32060 AT2G32220 AT2G36170 RPL24A AT2G37190 HTA8 AT2G40010 RPL16A AT2G44860 GCP1 AT2G45710 AT3G02220 AT3G03920 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06530 AT3G06700 MORF3 NSN1 AT3G07750 AT3G10610 RIP1 AT3G15460 AT3G16080 AT3G16780 APUM24 RACK1C AT3G18600 AT3G19440 TOM40 AT3G21540 AT3G22660 AT3G23620 AtTRM11 ATPHB4 CARA AT3G44590 ATHD2A AT3G46210 emb2474 ATEBP1 ROC2 AT3G58660 AT3G59540 AT3G60770 ARS27A YAO AT4G10450 AT4G11100 AT4G12600 AT4G12830 AT4G15640 AT4G15770 MORF1 smB ATFKBP53 ATFIB2 AT4G25730 AT4G29390 AT4G29410 RUXF AT4G30800 AT5G02050 HD2C AT5G08180 AT5G13830 AT5G14600 AT5G15520 AT5G15550 TOZ AT5G20160 AT5G20290 ATHD2 AT5G27770 AT5G48240 AT5G48760 TIM8 ATFBR1 AT5G56670 AT5G59850 PRH75
GO:0032259
methylation		BP4.663e-20IMPA-6 AtTPX2 TPR3 DECOY NUP155 ATPWP2 AT1G18850 ARF5 AT1G23280 AT1G23410 AT1G25260 AT1G26880 AT1G27400 CARB RACK1B ATNUC-L1 AT1G50920 AT1G52930 DRP5A NOP56 TIM13 AT1G63660 IMP4 CDKB2;1 AT1G80750 AT2G01630 ABH1 ATPRMT1A AT2G20450 EDA27 AT2G21580 HDA13 AT2G28600 AT2G32060 AT2G32220 SGD9 AT2G36170 RPL24A AT2G37190 HTA8 AT2G40010 RPL16A AT2G44860 AT2G45710 AT3G02220 AT3G03920 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06530 AT3G06700 ATPRMT4B NSN1 AT3G07750 AT3G10610 CYC2 AT3G14190 AT3G15460 AT3G16080 AT3G16780 APUM24 RACK1C AT3G18600 TOM40 AT3G21540 AT3G22660 RDM1 AT3G23620 ATMSH1 AtTRM11 ATPHB4 CARA AT3G44590 ATHD2A AT3G46210 emb2474 AT3G51280 ATEBP1 ROC2 AT3G57000 AT3G58470 AT3G58660 AT3G59540 AT3G60770 ARS27A YAO AT4G10450 AT4G12600 KINESIN-12A AT4G15640 AT4G15770 NRPD4 NRPB9B smB ATK1 ATFKBP53 ATFIB2 AT4G25730 AT4G28830 AT4G29390 AT4G29410 ATPRMT11 RUXF AT4G30800 AtAUR1 AT5G02050 HD2C ATUBA2 AT5G08180 AT5G13830 AT5G14600 AT5G15510 AT5G15520 AT5G15550 TOZ AT5G17270 AT5G20160 AT5G20290 ATHD2 ATCPSF100 AT5G27770 AT5G48240 AT5G48360 AT5G48760 TIM8 ATMAP65-3 ATFBR1 AT5G56670 AT5G59850 GR-RBP3 PRH75
GO:0043414
macromolecule methylation		BP3.745e-19IMPA-6 AtTPX2 TPR3 DECOY NUP155 ATPWP2 AT1G18850 ARF5 AT1G23280 AT1G23410 AT1G25260 AT1G26880 AT1G27400 CARB RACK1B ATNUC-L1 AT1G50920 AT1G52930 DRP5A NOP56 TIM13 AT1G63660 IMP4 CDKB2;1 AT1G80750 AT2G01630 ABH1 ATPRMT1A AT2G20450 EDA27 AT2G21580 HDA13 AT2G28600 AT2G32060 AT2G32220 SGD9 AT2G36170 RPL24A AT2G37190 HTA8 AT2G40010 RPL16A AT2G44860 AT2G45710 AT3G02220 AT3G03920 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06530 AT3G06700 ATPRMT4B NSN1 AT3G07750 AT3G10610 CYC2 AT3G14190 AT3G15460 AT3G16080 AT3G16780 APUM24 RACK1C AT3G18600 TOM40 AT3G21540 AT3G22660 RDM1 AT3G23620 ATMSH1 ATPHB4 CARA AT3G44590 ATHD2A AT3G46210 emb2474 AT3G51280 ATEBP1 ROC2 AT3G57000 AT3G58660 AT3G59540 AT3G60770 ARS27A YAO AT4G10450 AT4G12600 KINESIN-12A AT4G15640 AT4G15770 NRPD4 NRPB9B smB ATK1 ATFKBP53 ATFIB2 AT4G25730 AT4G29390 AT4G29410 ATPRMT11 RUXF AT4G30800 AtAUR1 AT5G02050 HD2C ATUBA2 AT5G08180 AT5G13830 AT5G14600 AT5G15510 AT5G15520 AT5G15550 TOZ AT5G17270 AT5G20160 AT5G20290 ATHD2 ATCPSF100 AT5G27770 AT5G48240 AT5G48360 AT5G48760 TIM8 ATMAP65-3 ATFBR1 AT5G56670 AT5G59850 GR-RBP3 PRH75
GO:0009220
pyrimidine ribonucleotide biosynthetic p...		BP2.776e-18ATPWP2 AT1G23280 AT1G28530 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0009218
pyrimidine ribonucleotide metabolic proc...		BP1.053e-17ATPWP2 AT1G23280 AT1G28530 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0006221
pyrimidine nucleotide biosynthetic proce...		BP1.182e-17ATPWP2 AT1G23280 AT1G28530 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0006220
pyrimidine nucleotide metabolic process		BP1.806e-17ATPWP2 AT1G23280 AT1G28530 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0072528
pyrimidine-containing compound biosynthe...		BP9.876e-17ATPWP2 AT1G23280 AT1G28530 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 emb2742 AtDJ1A AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0072527
pyrimidine-containing compound metabolic...		BP9.574e-16ATPWP2 AT1G23280 AT1G28530 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 emb2742 AtDJ1A AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0042254
ribosome biogenesis		BP1.144e-15LIP2 AT1G06720 AT1G07070 AT1G15250 ATPWP2 AT1G25260 AT1G26880 AT1G29965 AT1G31660 AT1G41880 AT1G42440 RACK1B ATNUC-L1 AT1G52930 IMP4 RPL34 EMB2762 AT2G20450 EDA27 RPL24A AT2G37190 AT2G39390 AT2G40010 AT2G40360 AT2G44860 AT2G45710 EDA13 AT3G03920 RPSAb AT3G04920 AT3G06680 AT3G06700 TRX AT3G07750 AT3G10090 AT3G10610 emb2742 AT3G13230 AT3G16080 AT3G16780 TOM40 AT3G22230 AtGRP4 ATHD2A AT3G53890 FLN1 AT3G55170 RPL23A2 AT3G55750 ROC2 AT3G59540 AT3G60245 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. ARS27A AT4G04940 RH39 AT4G12600 ATGRP2 AT4G15770 AT4G22380 ATFIB2 AT4G25730 AT4G26230 AT4G26600 AT4G29410 MRPL11 AT5G02610 AT5G03850 AT5G06360 AT5G08600 AT5G11240 AT5G11750 AT5G14520 AT5G15550 TOZ AT5G20160 AT5G20290 AT5G22100 AT5G27700 AT5G41190 AT5G46430 AT5G47930 ATFBR1 AT5G55140 OLI2 AT5G56710 RID2 AT5G59240 AT5G60670 RPS28 AT5G64670 AT5G66540
GO:0009165
nucleotide biosynthetic process		BP1.205e-15ATPWP2 AT1G23280 AT1G23410 AT1G28395 AT1G28530 ATNUDT15 AT1G31660 PRS2 AT1G42440 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G52930 EMB1860 NOP56 EMB3108 ARP2 AT1G63660 AT1G63810 AT1G69250 AT1G79150 PPR596 EMB2762 HDA13 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G10610 ATKRS-1 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58610 AT3G58660 AT3G59670 AT4G04940 YAO ATNDK1 CRF1 AT4G12600 AT4G18440 AK-HSDH ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 CSDP1 mtHsc70-1 AT4G39280 AT5G02050 AT5G05180 AT5G08180 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 AT5G59240 PNM1 GR-RBP3 AT5G61880 AT5G64420 AT5G64670 AT5G65860
GO:1901293
nucleoside phosphate biosynthetic proces...		BP1.552e-15ATPWP2 AT1G23280 AT1G23410 AT1G28395 AT1G28530 ATNUDT15 AT1G31660 PRS2 AT1G42440 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G52930 EMB1860 NOP56 EMB3108 ARP2 AT1G63660 AT1G63810 AT1G69250 AT1G79150 PPR596 EMB2762 HDA13 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G10610 ATKRS-1 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58610 AT3G58660 AT3G59670 AT4G04940 YAO ATNDK1 CRF1 AT4G12600 AT4G18440 AK-HSDH ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 CSDP1 mtHsc70-1 AT4G39280 AT5G02050 AT5G05180 AT5G08180 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 AT5G59240 PNM1 GR-RBP3 AT5G61880 AT5G64420 AT5G64670 AT5G65860
GO:0022613
ribonucleoprotein complex biogenesis		BP3.815e-15LIP2 AT1G06720 AT1G07070 AT1G15250 ATPWP2 AT1G25260 AT1G26880 AT1G29965 AT1G31660 AT1G41880 AT1G42440 RACK1B ATNUC-L1 AT1G52930 IMP4 RPL34 EMB2762 AT2G20450 EDA27 RPL24A AT2G37190 AT2G39390 AT2G40010 AT2G40360 AT2G44860 AT2G45710 EDA13 AT3G03920 RPSAb AT3G04920 AT3G06680 AT3G06700 TRX AT3G07750 AT3G10090 AT3G10610 emb2742 AT3G13230 AT3G16080 AT3G16780 TOM40 AT3G22230 AtGRP4 ATHD2A AT3G53890 FLN1 AT3G55170 RPL23A2 AT3G55750 ROC2 AT3G59540 AT3G60245 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. ARS27A AT4G04940 RH39 AT4G12600 ATGRP2 AT4G15770 AT4G22380 ATFIB2 AT4G25730 AT4G26230 AT4G26600 AT4G29410 MRPL11 AT5G02610 AT5G03850 AT5G06360 AT5G08600 AT5G11240 AT5G11750 AT5G14520 AT5G15550 TOZ AT5G20160 AT5G20290 AT5G22100 AT5G27700 AT5G41190 AT5G46430 AT5G47930 ATFBR1 AT5G55140 OLI2 AT5G56710 RID2 AT5G59240 AT5G60670 RPS28 AT5G64670 AT5G66540
GO:0006412
translation		BP7.464e-15AT1G01100 AT1G04480 AT1G06380 AT1G07070 AT1G07930 AT1G09590 AT1G15250 HLL ATFBP7 RPL27A AT1G23410 AT1G25260 AT1G26880 AT1G27400 AT1G29965 AT1G33120 AT1G41880 RACK1B AT1G52370 AT1G53560 AT1G56045 AT1G57660 AT1G57860 XW6 ARP2 ATELF5A-3 RPL34 AT1G80750 AT2G05830 AT2G09990 ABH1 AT2G19750 AT2G20450 AT2G21580 AT2G25210 AT2G31610 AT2G32060 AT2G32220 AT2G33840 AT2G36170 RPL24A AT2G37190 AT2G37600 AT2G39390 AT2G40010 AT2G40205 AT2G42710 RPL16A AT2G44860 AT2G45710 AT2G45730 AT3G02190 RPSAb AT3G04920 AT3G05560 AT3G06040 AT3G06320 AT3G06680 AT3G06700 AT3G08520 AT3G09680 AT3G10090 AT3G10610 ATKRS-1 AT3G13882 MEE35 AT3G16080 AT3G16565 AT3G16780 RPL3P RLK902 AT3G18760 AT3G22230 AT3G23390 AT3G43980 AT3G44010 AT3G44590 AT3G45020 RPS15AD AT3G49080 AT3G53890 AT3G55170 RPL23A2 OVA1 AT3G55750 AT3G58660 AT3G59540 AT3G60245 AT3G60770 ARS27A UBQ5 AT4G10450 AT4G25740 AT4G25890 AT4G26230 AT4G26870 AT4G29390 AT4G29410 AT4G30800 AT4G33865 AT4G34555 MRPL11 AT4G39280 AT5G02450 AT5G02610 AT5G03850 ATEIF3G2 AT5G06360 AT5G11750 AT5G15520 AT5G16140 AT5G20290 AT5G27700 AT5G27770 AT5G39850 AT5G40040 AT5G46160 AT5G46430 AT5G47700 AT5G47930 AT5G48760 AT5G55140 ANQ1 AT5G56670 AT5G56710 AT5G59240 AT5G59850 AT5G60670 AT5G62300 RPS28 AT5G64670 AT5G66860 AT5G67510
GO:0009260
ribonucleotide biosynthetic process		BP2.511e-13ATPWP2 AT1G23280 AT1G28530 ATNUDT15 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 AT4G18440 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0046390
ribose phosphate biosynthetic process		BP3.378e-13ATPWP2 AT1G23280 AT1G28530 ATNUDT15 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 AT4G18440 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0006606
protein import into nucleus		BP9.754e-12IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G79150 PPR596 AT2G18900 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0044744
protein targeting to nucleus		BP9.754e-12IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G79150 PPR596 AT2G18900 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:1902593
single-organism nuclear import		BP9.754e-12IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G79150 PPR596 AT2G18900 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0051170
nuclear import		BP1.877e-11IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G79150 PPR596 AT2G18900 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0034504
protein localization to nucleus		BP2.586e-11IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G79150 PPR596 AT2G18900 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0009259
ribonucleotide metabolic process		BP7.696e-11ATPWP2 AT1G23280 AT1G28530 ATNUDT15 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 SDH1-2 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 AT4G18440 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 AT5G47210 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0007005
mitochondrion organization		BP1.181e-10AT1G02370 AT1G08220 AT1G14060 AT1G15420 AT1G18850 AT1G26470 TOM20-2 POLGAMMA2 EMB1860 TIM13 LSM8 AT1G75670 AT2G19385 AT2G25355 ATTIM44-2 AT2G37400 AT2G39725 AT2G40700 AT3G02190 AT3G07750 AT3G07860 ATCOX17 TOM40 ATRPABC24.3 AT3G22660 ATMSH1 AtTRM11 AT3G46210 emb2474 AT3G57000 MEE49 YAO AT4G15770 MRPL11 AT4G36680 AtmtOM64 AT5G14580 AT5G15550 AT5G15750 AT5G38720 AT5G38890 ATTOM22-V TIM8 GR-RBP3
GO:0006626
protein targeting to mitochondrion		BP2.541e-10AT1G02370 AT1G14060 AT1G15420 AT1G18850 AT1G26470 TOM20-2 EMB1860 TIM13 LSM8 AT1G75670 AT2G19385 AT2G25355 ATTIM44-2 AT2G37400 AT2G39725 AT2G40700 AT3G02190 AT3G07750 AT3G07860 ATCOX17 TOM40 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 AT3G57000 MEE49 AT4G15770 MRPL11 AT4G36680 AtmtOM64 AT5G15550 AT5G15750 AT5G38720 AT5G38890 ATTOM22-V TIM8 GR-RBP3
GO:0070585
protein localization to mitochondrion		BP2.541e-10AT1G02370 AT1G14060 AT1G15420 AT1G18850 AT1G26470 TOM20-2 EMB1860 TIM13 LSM8 AT1G75670 AT2G19385 AT2G25355 ATTIM44-2 AT2G37400 AT2G39725 AT2G40700 AT3G02190 AT3G07750 AT3G07860 ATCOX17 TOM40 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 AT3G57000 MEE49 AT4G15770 MRPL11 AT4G36680 AtmtOM64 AT5G15550 AT5G15750 AT5G38720 AT5G38890 ATTOM22-V TIM8 GR-RBP3
GO:0072655
establishment of protein localization to...		BP2.541e-10AT1G02370 AT1G14060 AT1G15420 AT1G18850 AT1G26470 TOM20-2 EMB1860 TIM13 LSM8 AT1G75670 AT2G19385 AT2G25355 ATTIM44-2 AT2G37400 AT2G39725 AT2G40700 AT3G02190 AT3G07750 AT3G07860 ATCOX17 TOM40 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 AT3G57000 MEE49 AT4G15770 MRPL11 AT4G36680 AtmtOM64 AT5G15550 AT5G15750 AT5G38720 AT5G38890 ATTOM22-V TIM8 GR-RBP3
GO:0006913
nucleocytoplasmic transport		BP2.926e-10IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 NUP155 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G69250 AT1G79150 PPR596 AT2G18900 ATGRP7 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G10090 AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATPRMT5 AT5G03850 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:0051169
nuclear transport		BP2.926e-10IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 NUP155 ATPWP2 AT1G15480 ATNUP160 AT1G60080 AT1G63660 IDA AT1G69250 AT1G79150 PPR596 AT2G18900 ATGRP7 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G10090 AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATPRMT5 AT5G03850 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:0000469
cleavage involved in rRNA processing		BP1.933e-09ATNUC-L1 IMP4 EMB2762 RPSAb AT3G07750 emb2742 ATHD2A AT3G53890 AT5G11240 AT5G15550 AT5G20160 AT5G27700 AT5G41190 ATFBR1
GO:0006839
mitochondrial transport		BP3.697e-09AT1G02370 AT1G07030 AT1G14060 AT1G15420 AT1G18850 AT1G26470 TOM20-2 EMB1860 TIM13 LSM8 AT1G75670 AT2G19385 AT2G25355 ATTIM44-2 AT2G37400 AT2G37890 AT2G39725 AT2G40700 AT3G02190 AT3G07750 AT3G07860 ATCOX17 TOM40 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 AT3G53940 AT3G57000 MEE49 AT4G15770 AAC3 MRPL11 AT4G36680 AtmtOM64 AT5G15550 AT5G15750 AT5G38720 AT5G38890 ATTOM22-V TIM8 GR-RBP3
GO:0072594
establishment of protein localization to...		BP4.432e-09AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 LSM8 IDA AT1G75670 AT1G79150 PPR596 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 AT2G34357 ATTIM44-2 AT2G37400 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G02190 AT3G03920 RPSAb TRX AT3G07750 AT3G07860 AT3G12340 AT3G12390 AT3G12860 ATCOX17 APUM24 TOM40 AT3G21540 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 MRPL11 AT4G36680 ATEIF3G2 ATRH25 AtmtOM64 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0090501
RNA phosphodiester bond hydrolysis		BP6.394e-09ATNUC-L1 IMP4 EMB2762 RPSAb AT3G07750 emb2742 ATHD2A AT3G53890 AT5G11240 AT5G15550 AT5G20160 AT5G27700 AT5G41190 ATFBR1
GO:0044765
single-organism transport		BP8.944e-09AT1G01490 ATFRO2 AT1G02260 AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 MT1C AT1G07840 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 GAI AT1G15170 AT1G15180 AT1G15420 ATPWP2 ATBOR4 AT1G15480 ICR1 AtMYB51 AT1G18850 AT1G18980 AtCOR47 AT1G21010 AT1G22440 AT1G23000 EDF1 AT1G26470 TOM20-2 AT1G28390 ATNUDX25 AT1G30700 AT1G33090 ATNUP160 AT1G35350 AT1G50400 EMB1860 ATNAS4 AT1G60080 ATIRT3 TIM13 AT1G62500 AT1G63660 AT1G64610 LSM8 AT1G67300 IDA AT1G69250 MLP43 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 ATPIN4 AtSOT1 AT2G04090 AT2G04100 AHB1 PIP2;8 MEE15 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtGDU4 AtTic55 AT2G25355 ATCNGC15 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 NIP2;1 AT2G35730 ATTIM44-2 PIP2;2 NAKR2 AT2G37400 AT2G37890 ATWRKY33 ATMTP11 AT2G39725 ATPROT1 AT2G40430 AT2G40700 AT2G42690 AT2G42950 AT2G45730 ATCNGC12 ABCC4 AT3G01860 AT3G02190 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb AtRLP30 AT3G05500 RCI2A TRX AT3G07750 AT3G07860 LTP6 LAC7 TAC1 AT3G10090 AHB2 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATPPC3 AT3G15240 ATCOX17 ATRALF23 APUM24 ATNHD1 TOM40 AtOCT4 AT3G21540 AT3G22160 GABA-T ATRPABC24.3 AT3G22660 AMT1;5 AOC3 AtTRM11 AT3G26450 CCL PMZ AT3G46210 emb2474 COPT2 AT3G47480 AAE3 UGT72E1 ATEBP1 ATCAX3 AT3G52170 ATELP AtFBA8 AT3G53940 ATFER3 EDA7 AT3G57000 AT3G57940 AT3G58060 ATMTP3 BGLU16 AT3G60260 BRH1 UNE11 ATKEA2 MEE49 GLB1 AT4G04940 YAO CRF1 BASS5 AT4G15160 AtCLA1 AT4G15770 GOX3 ATIRT1 Encodes a defensin-like (DEFL) family protein. AT4G22470 AT4G22520 AT4G23670 AtG3Pp2 ACS7 AT4G26600 AT4G27640 AAC3 ACA10 ATSDX1 AT4G33420 ADC2 RHA3B MRPL11 AT4G36680 AT4G36790 PLS AT4G39670 TAAC AT5G02170 AT5G03380 ATIREG2 AT5G03850 SIR ATNAS1 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 ATGLR2.5 AAC2 ZIFL1 ATCHS AT5G14520 AT5G14580 AT5G14880 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G19090 CLT1 PHT4;5 AT5G22890 AT5G23830 ATSTP13 ATIREG3 HTA7 GORK AT5G37990 AT5G38030 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 AT5G41190 ATTOM22-V ATERF-9 AtPP2-A8 AT5G46890 TIM8 AT5G52750 ATPMEPCRF ATNAS2 AGR AT5G59240 DVL18 ATEXO70H7 AT5G60730 ATNRT2.4 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G62890 ATFP3 RPS28 AT5G66540
GO:0000478
endonucleolytic cleavage involved in rRN...		BP1.082e-08ATNUC-L1 IMP4 EMB2762 RPSAb AT3G07750 emb2742 ATHD2A AT3G53890 AT5G11240 AT5G15550 AT5G20160 AT5G27700 ATFBR1
GO:0090502
RNA phosphodiester bond hydrolysis, endo...		BP1.082e-08ATNUC-L1 IMP4 EMB2762 RPSAb AT3G07750 emb2742 ATHD2A AT3G53890 AT5G11240 AT5G15550 AT5G20160 AT5G27700 ATFBR1
GO:0033365
protein localization to organelle		BP1.094e-08AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 LSM8 IDA AT1G75670 AT1G79150 PPR596 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 AT2G34357 ATTIM44-2 AT2G37400 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G02190 AT3G03920 RPSAb TRX AT3G07750 AT3G07860 AT3G12340 AT3G12390 AT3G12860 ATCOX17 APUM24 TOM40 AT3G21540 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 MRPL11 AT4G36680 ATEIF3G2 ATRH25 AtmtOM64 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:1902578
single-organism localization		BP2.144e-08AT1G01490 ATFRO2 AT1G02260 AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 MT1C AT1G07840 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 GAI AT1G15170 AT1G15180 AT1G15420 ATPWP2 ATBOR4 AT1G15480 ICR1 AtMYB51 AT1G18850 AT1G18980 AtCOR47 AT1G21010 AT1G22440 AT1G23000 EDF1 AT1G26470 TOM20-2 AT1G28390 ATNUDX25 AT1G30700 AT1G33090 ATNUP160 AT1G35350 AT1G50400 EMB1860 ATNAS4 AT1G60080 ATIRT3 TIM13 AT1G62500 AT1G63660 AT1G64610 LSM8 AT1G67300 IDA AT1G69250 MLP43 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 ATPIN4 AtSOT1 AT2G04090 AT2G04100 AHB1 PIP2;8 MEE15 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtGDU4 AtTic55 AT2G25355 ATCNGC15 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 NIP2;1 AT2G35730 ATTIM44-2 PIP2;2 NAKR2 AT2G37400 AT2G37890 ATWRKY33 ATMTP11 AT2G39725 ATPROT1 AT2G40430 AT2G40700 AT2G42690 AT2G42950 AT2G45730 ATCNGC12 ABCC4 AT3G01860 AT3G02190 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb AtRLP30 AT3G05500 RCI2A TRX AT3G07750 AT3G07860 LTP6 LAC7 TAC1 AT3G10090 AHB2 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATPPC3 AT3G15240 ATCOX17 ATRALF23 APUM24 ATNHD1 TOM40 AtOCT4 AT3G21540 AT3G22160 GABA-T ATRPABC24.3 AT3G22660 AMT1;5 AOC3 AtTRM11 AT3G26450 CCL PMZ AT3G46210 emb2474 COPT2 AT3G47480 AAE3 UGT72E1 ATEBP1 ATCAX3 AT3G52170 ATELP AtFBA8 AT3G53940 ATFER3 EDA7 AT3G57000 AT3G57940 AT3G58060 ATMTP3 BGLU16 AT3G60260 BRH1 UNE11 ATKEA2 MEE49 GLB1 AT4G04940 YAO CRF1 BASS5 AT4G15160 AtCLA1 AT4G15770 GOX3 ATIRT1 Encodes a defensin-like (DEFL) family protein. AT4G22470 AT4G22520 AT4G23670 AtG3Pp2 ACS7 AT4G26600 AT4G27640 AAC3 ACA10 ATSDX1 AT4G33420 ADC2 RHA3B MRPL11 AT4G36680 AT4G36790 PLS AT4G39670 TAAC AT5G02170 AT5G03380 ATIREG2 AT5G03850 SIR ATNAS1 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 ATGLR2.5 AAC2 ZIFL1 ATCHS AT5G14520 AT5G14580 AT5G14880 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G19090 CLT1 PHT4;5 AT5G22890 AT5G23830 ATSTP13 ATIREG3 HTA7 GORK AT5G37990 AT5G38030 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 AT5G41190 ATTOM22-V ATERF-9 AtPP2-A8 AT5G46890 TIM8 AT5G52750 ATPMEPCRF ATNAS2 AGR AT5G59240 DVL18 ATEXO70H7 AT5G60730 ATNRT2.4 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G62890 ATFP3 RPS28 AT5G66540
GO:0016482
cytoplasmic transport		BP2.531e-08AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 GLP5 AT1G11240 AT1G13160 AT1G14060 NUP155 AT1G15420 ATPWP2 AT1G15480 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 LSM8 IDA AT1G69250 AT1G75670 AAP3 AT1G79150 PPR596 AT2G18900 AT2G19385 ATGRP7 AtTic55 AT2G25355 AT2G28450 AT2G34357 ATTIM44-2 AT2G37400 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G02190 AT3G03920 RPSAb TRX AT3G07750 AT3G07860 AT3G10090 AT3G12340 AT3G12390 AT3G12860 BRL3 ATCOX17 APUM24 TOM40 AT3G21540 ATRPABC24.3 AT3G22660 AtTRM11 AT3G46210 emb2474 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ATPRMT5 MRPL11 AT4G36680 AT5G03850 ATEIF3G2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:0006605
protein targeting		BP4.017e-08AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ADC2 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:1902580
single-organism cellular localization		BP4.511e-08AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ADC2 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0009719
response to endogenous stimulus		BP1.046e-07ATFRO2 UGT74E2 AT1G11210 EDF4 GAI ATSRG1 AtMYB51 ATDHAR1 ARF5 AtCOR47 ERD10 EDF1 STZ ATNUP160 RAP2.6 5PTASE11 JAZ4 RACK1B ATMTK GRI ALDH7B4 ATLOX1 ARR3 AT1G63720 AT1G64610 IDA ACR4 ATHVA22C ATMYBL2 ATMKK9 ATBS1 ATMYB31 AT1G75580 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. AT1G80440 ATWRKY40 AtSOT1 AIR3 AT2G05830 ABH1 UGT73B5 UGT73B4 PIP2;8 AT2G23120 AtWRKY15 PYL2 AT2G28780 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32020 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G34810 SGD9 AT2G35290 PIP2;2 ATEXP3 ATWRKY33 AtERF48 ATWRKY23 GASA5 AtRLP30 AT3G05500 RCI2A AT3G06750 AT3G07310 ATPUB9 AIR12 AT3G08030 AHB2 AT3G11110 AT3G12900 IAA26 ATRALF23 RACK1C ATPUB29 PUB25 AT3G22160 AOC3 PMZ AT3G47480 emb1796 MYB77 AtDWF4 GATL2 BCS1 LTI30 AT3G54150 A11 AT3G55430 BRH1 AtTIR1 MARD1 UNE11 AtWRKY22 AT4G01870 CRF1 RHA1B BASS5 ATDI21 ATHB-2 5PTASE2 ATIRT1 AT4G22530 AT4G29110 AT4G30020 BRS1 RSL2 ADC2 AT4G34760 RHA3B ATPLDDELTA ATMYB73 CYP81D8 ATCSP2 ATBRI1 PLS AT4G39670 AT5G03380 HD2C C2H2 ATNAS1 PYL5 ATPGIP1 ATPGIP2 ATS3 ATFLS1 anac081 AIL6 ATWRKY75 Rap2.6L LEP ATCHS AtCor6.6 AT5G22890 ATVSP1 AT5G25940 ATSTP13 AT5G27760 BGLU42 ARF8 GORK Encodes a putative amino acid transporter. ANAC092 RS5 ATERF-9 CYP707A3 ATERF-5 HAT2 COR78 ATNAS2 AGR ATMYB34 PDCB1 ATMYB96 BT1 ATCMPG2 ATWRKY51 AT5G65300 AT5G66650
GO:0009117
nucleotide metabolic process		BP1.420e-07LIP2 GAPC-2 ATPWP2 AT1G23280 AT1G23410 AT1G28395 AT1G28530 ATNUDT15 ATNUDX25 AT1G31660 PRS2 AT1G42440 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G52930 EMB1860 NOP56 EMB3108 ARP2 AT1G62780 AT1G63660 AT1G63810 AT1G69250 AT1G79150 PPR596 EMB2762 SDH1-2 HDA13 WDR55 AT2G35040 AT2G37020 AT2G45730 AT3G01820 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G10610 ATKRS-1 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AtFBA8 AT3G53940 ATPURM AT3G57940 AT3G58610 AT3G58660 AT3G59670 GAE3 GLB1 AT4G04940 YAO ATNDK1 CRF1 AT4G12600 CYP83A1 AtCLA1 AT4G18440 AK-HSDH ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 CSDP1 mtHsc70-1 AT4G39280 AT5G02050 AT5G05180 AT5G08180 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 PGL4 AT5G47210 ATPGMP AT5G59240 PNM1 GR-RBP3 AT5G61880 PSAN AT5G64420 AT5G64670 AT5G65860
GO:0006753
nucleoside phosphate metabolic process		BP1.791e-07LIP2 GAPC-2 ATPWP2 AT1G23280 AT1G23410 AT1G28395 AT1G28530 ATNUDT15 ATNUDX25 AT1G31660 PRS2 AT1G42440 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G52930 EMB1860 NOP56 EMB3108 ARP2 AT1G62780 AT1G63660 AT1G63810 AT1G69250 AT1G79150 PPR596 EMB2762 SDH1-2 HDA13 WDR55 AT2G35040 AT2G37020 AT2G45730 AT3G01820 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G10610 ATKRS-1 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AtFBA8 AT3G53940 ATPURM AT3G57940 AT3G58610 AT3G58660 AT3G59670 GAE3 GLB1 AT4G04940 YAO ATNDK1 CRF1 AT4G12600 CYP83A1 AtCLA1 AT4G18440 AK-HSDH ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 CSDP1 mtHsc70-1 AT4G39280 AT5G02050 AT5G05180 AT5G08180 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 PGL4 AT5G47210 ATPGMP AT5G59240 PNM1 GR-RBP3 AT5G61880 PSAN AT5G64420 AT5G64670 AT5G65860
GO:1901137
carbohydrate derivative biosynthetic pro...		BP2.403e-07AMI1 GAPC-2 ATPWP2 AtMYB51 AT1G23280 AT1G28530 ATNUDT15 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 AtDJ1B EMB1860 NOP56 EMB3108 FMO AT1G63660 AT1G63810 AT1G79150 PPR596 AIR3 EMB2762 encodes a protein whose sequence is similar to ACC oxidase Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G31790 WDR55 AT2G35040 BE3 AT2G37020 AT2G42690 ATLEUD1 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G15940 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 AT3G50685 ATEBP1 ATELP AT3G53940 ATPURM AT3G57940 AT3G58640 AT3G58660 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. ATSUS3 AT4G04940 YAO ATNDK1 CRF1 BASS5 CYP83A1 AT4G18440 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 AT4G30020 AT4G31790 AT4G32920 ATIPS1 AT5G02050 SIR AtENGase85A AT5G08570 PDE340 AT5G11240 ATWRKY75 ATIMD1 Cpn60alpha2 ATHD2 IMS2 ATCPSF100 GPDHp AT5G47210 ATPGMP ATMYB34 PNM1 GR-RBP3 AT5G61880 AT5G64670
GO:0006886
intracellular protein transport		BP3.421e-07AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ADC2 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0017038
protein import		BP5.358e-07IMPA-6 TPR3 AT1G06720 AT1G07840 AT1G11240 AT1G13160 ATPWP2 AT1G15480 TOM20-2 ATNUP160 AT1G60080 TIM13 AT1G63660 IDA AT1G79150 PPR596 AT2G18900 AT2G28450 AT2G34357 AT2G40430 AT2G40700 AT2G45730 AT3G03920 RPSAb AT3G12340 AT3G12390 AT3G12860 APUM24 AT3G21540 AT3G22660 emb2474 ATEBP1 AT3G52170 EDA7 AT3G57940 AT4G04940 YAO CRF1 AT4G26600 AT4G27640 ATEIF3G2 ATRH25 AT5G14520 AT5G14580 AT5G15550 AT5G15810 TOZ AT5G17270 AT5G41190 TIM8 AT5G59240 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0009725
response to hormone		BP5.973e-07ATFRO2 UGT74E2 AT1G11210 EDF4 GAI ATSRG1 AtMYB51 ATDHAR1 ARF5 AtCOR47 ERD10 EDF1 STZ ATNUP160 RAP2.6 5PTASE11 JAZ4 RACK1B ATMTK GRI ALDH7B4 ATLOX1 ARR3 AT1G63720 AT1G64610 IDA ACR4 ATHVA22C ATMYBL2 ATMKK9 ATBS1 ATMYB31 AT1G75580 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. AT1G80440 ATWRKY40 AtSOT1 AIR3 AT2G05830 ABH1 UGT73B5 UGT73B4 PIP2;8 AT2G23120 PYL2 AT2G28780 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32020 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G34810 AT2G35290 PIP2;2 ATEXP3 ATWRKY33 AtERF48 ATWRKY23 GASA5 AtRLP30 RCI2A AT3G06750 AT3G07310 ATPUB9 AIR12 AT3G08030 AHB2 AT3G11110 AT3G12900 IAA26 ATRALF23 RACK1C AT3G22160 AOC3 PMZ AT3G47480 emb1796 MYB77 AtDWF4 GATL2 LTI30 AT3G54150 A11 BRH1 AtTIR1 MARD1 UNE11 AT4G01870 CRF1 BASS5 ATDI21 ATHB-2 5PTASE2 ATIRT1 AT4G30020 BRS1 RSL2 ADC2 AT4G34760 ATPLDDELTA ATMYB73 CYP81D8 ATCSP2 ATBRI1 PLS AT4G39670 HD2C ATNAS1 PYL5 ATPGIP1 ATPGIP2 ATS3 ATFLS1 anac081 AIL6 ATWRKY75 Rap2.6L LEP ATCHS AtCor6.6 ATVSP1 AT5G25940 ATSTP13 AT5G27760 BGLU42 ARF8 GORK Encodes a putative amino acid transporter. ANAC092 RS5 ATERF-9 ATERF-5 HAT2 COR78 ATNAS2 AGR ATMYB34 PDCB1 ATMYB96 BT1 ATWRKY51 AT5G65300
GO:0055086
nucleobase-containing small molecule met...		BP6.590e-07LIP2 GAPC-2 ATPWP2 AT1G23280 AT1G23410 AT1G28395 AT1G28530 ATNUDT15 ATNUDX25 AT1G31660 PRS2 AT1G42440 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G52930 EMB1860 NOP56 EMB3108 ARP2 AT1G62780 AT1G63660 AT1G63810 AT1G69250 AT1G79150 PPR596 EMB2762 SDH1-2 HDA13 WDR55 AT2G35040 AT2G37020 AT2G45730 AT3G01820 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G10610 ATKRS-1 emb2742 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 AtTRM11 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AtFBA8 AT3G53940 ATPURM AT3G57940 AT3G58610 AT3G58660 AT3G59670 GAE3 GLB1 AT4G04940 YAO ATNDK1 CRF1 AT4G12600 CYP83A1 AtCLA1 AT4G18440 AK-HSDH AT4G24350 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 CSDP1 mtHsc70-1 AT4G39280 AT5G02050 AT5G05180 AT5G08180 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 PGL4 AT5G47210 ATPGMP AT5G59240 PNM1 GR-RBP3 AT5G61880 PSAN AT5G64420 AT5G64670 AT5G65860
GO:0034613
cellular protein localization		BP1.235e-06AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ADC2 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0071702
organic substance transport		BP1.272e-06AT1G02260 AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 AT1G07840 ATSYP111 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G21010 AT1G26470 TOM20-2 AT1G28390 ATNUDX25 AT1G30700 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G62500 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G69250 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtGDU4 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 NIP2;1 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 ATPROT1 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb AtRLP30 AT3G05500 TRX AT3G07750 AT3G07860 LTP6 AT3G08943 AT3G10090 MEE67 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATCOX17 APUM24 ATNHD1 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AMT1;5 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15160 AT4G15770 AT4G22470 AT4G22520 ACS7 AT4G26600 AT4G27640 AAC3 ARAC7 ATPRMT5 ATSDX1 ADC2 ARAC3 RHA3B MRPL11 AT4G36680 AT4G39670 AT5G02170 AT5G03850 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 ATGLR2.5 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 CLT1 ATSTP13 AT5G27395 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 AT5G41190 ATTOM22-V ATERF-9 AT5G46890 TIM8 ATPMEPCRF AT5G59240 DVL18 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:1902582
single-organism intracellular transport		BP1.463e-06AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 AT1G07840 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 AT1G64610 LSM8 IDA AT1G69250 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 AT2G37890 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G10090 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP AT3G53940 EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 AAC3 ADC2 MRPL11 AT4G36680 AT4G39670 AT5G03850 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:0042221
response to chemical		BP1.741e-06ATFRO2 ATCSLD5 UGT1 UGT74E2 encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols MT1C ALMT1 ATSYP111 AT1G08940 GLP5 LRR AT1G11210 ATGLX1 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. GAI AT1G15170 AT1G15180 ATBOR4 ATSRG1 ATGSTU24 ATGSTU25 AtMYB51 ATWRKY61 AT1G18980 ATDHAR1 ARF5 AtCOR47 ERD10 RAP2.4 AT1G22440 EDF1 STZ AT1G30700 AT1G33090 ATNUP160 RAP2.6 RAP2.1 5PTASE11 JAZ4 RACK1B PAB8 ATMTK GRI AtDJ1B ALDH7B4 ATLOX1 ARR3 AT1G63720 AT1G64610 LSM8 IDA ACR4 ATHVA22C ATMYBL2 TFIIIA AT1G72900 AT1G73120 APC13 ATMKK9 ATBS1 NRP1 ATMYB31 AT1G75580 AHL29 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. AT1G80440 ATWRKY40 MLP328 ATGSTZ1 AtSOT1 AT2G04090 AT2G04100 AIR3 AT2G05830 ABH1 ALD1 UGT73B5 UGT73B4 AHB1 PIP2;8 APC10 AT2G20940 ATGRP7 AT2G23120 AtWRKY15 PYL2 HDA13 AT2G28780 ATGSTU1 UGT87A2 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32020 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G34810 SGD9 AT2G35290 AT2G35730 PIP2;2 ATEXP3 AKR4C8 LCD1 ATWRKY33 ATMTP11 AtERF48 BHLH100 AT2G41250 AT2G41380 AT-HSFB3 AT2G42690 ATWRKY23 ABCC4 AT3G01860 GASA5 ATMS2 AtRLP30 AT3G05500 RCI2A AT3G06750 AT3G07310 ATPUB9 AIR12 AT3G07720 AT3G08030 LTP6 LAC7 TAC1 AHB2 AT3G11110 CYC2 emb2742 AT3G12900 BRL3 AT3G13510 AT3G13950 ATPPC3 AtDJ1A AT3G15240 ATCOX17 IAA26 ATRALF23 RACK1C ATPUB29 ATPREP1 PUB25 AtOCT4 AT3G22160 GABA-T ATRH9 RDM1 AtGRP4 AOC3 AtMAD2 AT3G26450 PMZ AtNIT3 AT3G44380 ATSMC2 AT3G47480 AtMYB45 AAE3 emb1796 MYB77 AtDWF4 UGT72E1 GATL2 BCS1 LTI30 ATCAX3 AtFBA8 AtCDC48B AT3G54150 A11 AT3G55430 ROC2 ATFER3 SIB1 AT3G57020 AT3G58610 ATMTP3 BRH1 AtTIR1 MARD1 UNE11 AtWRKY22 MEE49 AT4G01870 GLB1 ATSUS3 AT4G08790 ATNDK1 CRF1 RHA1B BASS5 ATGRP2 SBP1 ELIP2 MAA3 ATDI21 NRPD4 ATHB-2 ALMT12 5PTASE2 ATIRT1 AT4G22530 AT4G23670 AtSAP10 AT4G26870 ATEXPB3 AT4G29110 PRF4 AT4G30020 BRS1 AT4G30660 ATPRMT5 CYP82C4 AT4G33070 LKR AT4G33420 AT4G33540 RSL2 ADC2 AT4G34760 RHA3B ATPLDDELTA CSDP1 ATMYB73 CYP81D8 mtHsc70-1 ATCSP2 ATBRI1 PLS AT4G39670 AT5G03380 ATIREG2 HD2C C2H2 SIR ATNAS1 AtCHIL PYL5 AT5G05880 ATPGIP1 ATPGIP2 ATS3 ATRH25 ATFLS1 anac081 AIL6 ATWRKY75 Rap2.6L ZIFL1 LEP ATCHS AtCor6.6 TOZ ATGSTF12 Cpn60alpha2 CLT1 AtNIT4 AT5G22890 ATCPSF100 ATSOS3 ATVSP1 AT5G25940 ATSTP13 AT5G27760 BGLU42 ARF8 GORK AT5G38030 Encodes a putative amino acid transporter. ABCB27 ANAC092 RS5 DRB5 ATERF-9 CYP707A3 ATERF-5 HAT2 AT5G47600 mtACP3 AtNSP5 AT5G51830 COR78 ATPMEPCRF OLI2 ATNAS2 AGR AT5G57785 AT5G60730 ATNRT2.4 ATMYB34 PDCB1 AT5G62210 ATMYB96 BT1 ANAC102 AT5G63940 AT5G64250 EXL2 ATCMPG2 ATWRKY51 AT5G65300 AT5G66650
GO:0015031
protein transport		BP1.878e-06AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 MEE67 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ARAC7 ADC2 ARAC3 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0045184
establishment of protein localization		BP2.255e-06AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 MEE67 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ARAC7 ADC2 ARAC3 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0070727
cellular macromolecule localization		BP2.642e-06AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 ADC2 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 PDCB1 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0006810
transport		BP2.684e-06AT1G01490 ATFRO2 AT1G02260 AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 MT1C AT1G07840 ATSYP111 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 NUP155 GAI AT1G15170 AT1G15180 AT1G15420 ATPWP2 ATBOR4 AT1G15480 ICR1 AtMYB51 AT1G18850 AT1G18980 AtCOR47 AT1G21010 AT1G22440 AT1G23000 EDF1 AT1G26470 TOM20-2 AT1G28390 ATNUDX25 AT1G30700 AT1G30960 AT1G33090 ATNUP160 AT1G35350 AT1G50400 EMB1860 ATNAS4 AT1G60080 ATIRT3 TIM13 AT1G62500 AT1G63660 TOM7-2 AT1G64610 LSM8 AT1G67300 IDA AT1G69250 MLP43 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 ATPIN4 AtSOT1 AT2G04090 AT2G04100 AHB1 PIP2;8 MEE15 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtGDU4 AtTic55 AT2G25355 ATCNGC15 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 NIP2;1 AT2G35730 ATTIM44-2 PIP2;2 NAKR2 AT2G37400 AT2G37890 ATWRKY33 ATMTP11 AT2G39725 ATPROT1 AT2G40430 AT2G40700 AT2G42690 AT2G42950 AT2G45730 ATCNGC12 ABCC4 AT3G01860 AT3G02190 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb AtRLP30 AT3G05500 RCI2A TRX AT3G07750 AT3G07860 LTP6 AT3G08943 LAC7 TAC1 AT3G10090 MEE67 AHB2 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATPPC3 AT3G15240 ATCOX17 ATRALF23 APUM24 ATNHD1 TOM40 AtOCT4 AT3G21540 AT3G22160 GABA-T ATRPABC24.3 AT3G22660 AMT1;5 AOC3 AtTRM11 AT3G26450 CCL PMZ AT3G46210 emb2474 COPT2 AT3G47480 AAE3 UGT72E1 ATEBP1 ATCAX3 AT3G52170 ATELP AtFBA8 AT3G53940 ATFER3 EDA7 AT3G57000 AT3G57940 AT3G58060 ATMTP3 BGLU16 AT3G60260 BRH1 UNE11 ATKEA2 MEE49 GLB1 AT4G04940 YAO CRF1 BASS5 AT4G15160 AtCLA1 AT4G15770 GOX3 ATIRT1 Encodes a defensin-like (DEFL) family protein. AT4G22470 AT4G22520 AT4G23670 AtG3Pp2 ACS7 AT4G26600 AT4G27640 AAC3 ARAC7 ACA10 ATPRMT5 ATSDX1 AT4G33420 ADC2 ARAC3 RHA3B MRPL11 AT4G36680 AT4G36790 PLS AT4G39670 TAAC AT5G02170 AT5G03380 ATIREG2 AT5G03850 SIR ATNAS1 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 ATGLR2.5 AAC2 ZIFL1 ATCHS AT5G14520 AT5G14580 AT5G14880 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G19090 CLT1 PHT4;5 AT5G22890 AT5G23830 ATSTP13 ATIREG3 AT5G27395 HTA7 GORK AT5G37990 AT5G38030 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 AT5G41190 ATTOM22-V ATERF-9 AtPP2-A8 AT5G46890 TIM8 AT5G52750 ATPMEPCRF ATNAS2 AGR AT5G59240 DVL18 ATEXO70H7 AT5G60730 ATNRT2.4 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G62890 ATFP3 RPS28 AT5G66540
GO:1901566
organonitrogen compound biosynthetic pro...		BP2.970e-06LIP2 GLX2-4 ATSMO1 ADT6 AMI1 ATATP-PRT2 ATGLX1 ATPWP2 AtMYB51 AT1G23280 AT1G28395 AT1G28530 ATNUDT15 CARB AT1G31660 AT1G48570 RACK1B ATNUC-L1 PAB8 ATMTK AT1G52930 EMB1860 NOP56 ATNAS4 ATATP-PRT1 EMB3108 AT1G63660 AT1G63810 ATMKK9 ATGSTU20 AT1G79150 PPR596 WIN1 AT2G05830 ABH1 ALD1 EMB2762 HO2 ATSMO2 WDR55 AT2G35040 AT2G37020 ATWRKY33 AT2G42690 ATLEUD1 DHDPS2 AT2G45730 ATMS2 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G08030 AT3G09720 OMR1 AT3G10530 AT3G10610 emb2742 AtDJ1A AT3G15460 ADS3 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 AT3G26450 CARA ATNIT1 ATHD2A AT3G49080 emb1796 UGT72E1 SSL5 ATEBP1 AT3G53940 ATPURM AT3G57010 AT3G57020 AT3G57940 AT3G58610 AT3G58660 DHDPS EMB3127 GLB1 DES-1-LIKE AT4G04940 YAO ACS11 ATNDK1 CRF1 AT4G12600 CYP83A1 ELIP2 CYP702A2 AtCLA1 AT4G18440 AK-HSDH AT4G23670 ATFIB2 ACS7 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 ADC2 ARAC3 ATIPS1 AT5G02050 SIR ATNAS1 PDE340 AT5G11240 CARAB-AK-LYS ATIMD1 HEMG2 AT5G16140 VAT1 Cpn60alpha2 AT5G21105 ATHD2 IMS2 ATCPSF100 AT5G46160 AT5G47210 AtNSP5 AT5G53850 ATNAS2 COX15 ATMYB34 PNM1 GR-RBP3 PDCB1 AT5G61880 PSAN AT5G64670
GO:1901700
response to oxygen-containing compound		BP4.535e-06ATCSLD5 UGT1 UGT74E2 encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols MT1C GLP5 AT1G11210 EDF4 GAI ATSRG1 AtMYB51 AT1G18980 ATDHAR1 ARF5 AtCOR47 ERD10 RAP2.4 AT1G22440 STZ RAP2.6 RAP2.1 5PTASE11 JAZ4 RACK1B ATMTK GRI ALDH7B4 ATLOX1 AT1G63720 AT1G64610 ATHVA22C ATMYBL2 AT1G72900 APC13 ATMKK9 ATBS1 ATMYB31 AHL29 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATWRKY40 AtSOT1 AT2G05830 ABH1 ALD1 AHB1 PIP2;8 AT2G20940 ATGRP7 AT2G23120 AtWRKY15 PYL2 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32020 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G34810 SGD9 AT2G35290 PIP2;2 ATEXP3 AKR4C8 LCD1 ATWRKY33 AtERF48 BHLH100 AT2G42690 ABCC4 GASA5 AtRLP30 AT3G05500 RCI2A AT3G06750 AT3G07310 ATPUB9 AT3G08030 LTP6 LAC7 TAC1 AT3G11110 AT3G12900 AT3G13510 AT3G13950 ATPPC3 ATRALF23 RACK1C ATPUB29 PUB25 AtOCT4 AT3G22160 ATRH9 AtGRP4 AOC3 AT3G26450 PMZ AT3G44380 AT3G47480 AtMYB45 AAE3 emb1796 MYB77 AtDWF4 UGT72E1 GATL2 BCS1 LTI30 AtFBA8 AT3G54150 A11 AT3G55430 ATFER3 SIB1 AT3G57020 ATMTP3 BRH1 MARD1 UNE11 AtWRKY22 MEE49 AT4G01870 GLB1 ATSUS3 AT4G08790 CRF1 RHA1B BASS5 ATGRP2 SBP1 ELIP2 ATDI21 5PTASE2 ATIRT1 AT4G22530 AT4G23670 AtSAP10 AT4G29110 PRF4 BRS1 AT4G30660 ATPRMT5 AT4G33070 LKR AT4G33420 ADC2 RHA3B ATPLDDELTA CSDP1 ATMYB73 ATCSP2 ATBRI1 AT4G39670 AT5G03380 ATIREG2 HD2C C2H2 ATNAS1 AtCHIL PYL5 ATPGIP1 ATPGIP2 ATS3 ATRH25 ATFLS1 anac081 ATWRKY75 Rap2.6L ZIFL1 LEP ATCHS AtCor6.6 TOZ ATGSTF12 Cpn60alpha2 AT5G22890 ATVSP1 ATSTP13 BGLU42 GORK Encodes a putative amino acid transporter. ANAC092 RS5 CYP707A3 ATERF-5 AT5G47600 COR78 ATPMEPCRF OLI2 ATNAS2 AGR AT5G57785 ATNRT2.4 ATMYB34 PDCB1 AT5G62210 ATMYB96 BT1 ATCMPG2 ATWRKY51 AT5G65300 AT5G66650
GO:0046907
intracellular transport		BP8.511e-06AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 AT1G07840 ATSYP111 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 NUP155 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G69250 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 AT2G37890 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 AT3G10090 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP AT3G53940 EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 AAC3 ATPRMT5 ADC2 MRPL11 AT4G36680 AT4G39670 AT5G03850 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:1902170
cellular response to reactive nitrogen s...		BP8.716e-06ATMTK AT2G05830 AT3G12900 ATIRT1 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2 ATNRT2.4
GO:0006403
RNA localization		BP1.002e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 ATPRMT5 AT5G03850 AT5G15810 TOZ AT5G17270 RPS28
GO:0006405
RNA export from nucleus		BP1.002e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 ATPRMT5 AT5G03850 AT5G15810 TOZ AT5G17270 RPS28
GO:0050657
nucleic acid transport		BP1.002e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 ATPRMT5 AT5G03850 AT5G15810 TOZ AT5G17270 RPS28
GO:0050658
RNA transport		BP1.002e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 ATPRMT5 AT5G03850 AT5G15810 TOZ AT5G17270 RPS28
GO:0051236
establishment of RNA localization		BP1.002e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 ATPRMT5 AT5G03850 AT5G15810 TOZ AT5G17270 RPS28
GO:0071241
cellular response to inorganic substance		BP1.032e-05ATMTK AT2G05830 AT3G12900 SBP1 ATIRT1 CYP82C4 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2 ATNRT2.4
GO:0033993
response to lipid		BP1.034e-05UGT74E2 AT1G11210 EDF4 GAI ATSRG1 AtMYB51 ARF5 AtCOR47 ERD10 STZ RAP2.6 5PTASE11 RACK1B ALDH7B4 ATLOX1 AT1G63720 AT1G64610 ATHVA22C ATMYBL2 ATBS1 ATMYB31 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATWRKY40 ABH1 PIP2;8 AT2G23120 PYL2 AT2G32020 AT2G35290 PIP2;2 ATEXP3 AtERF48 GASA5 AtRLP30 RCI2A AT3G06750 AT3G07310 ATPUB9 AT3G08030 AT3G11110 ATRALF23 RACK1C AT3G22160 AOC3 PMZ emb1796 AtDWF4 LTI30 AT3G54150 BRH1 MARD1 UNE11 AT4G01870 CRF1 ATDI21 5PTASE2 ATIRT1 BRS1 ADC2 ATPLDDELTA ATMYB73 ATCSP2 ATBRI1 AT4G39670 HD2C PYL5 ATPGIP1 ATS3 Rap2.6L LEP AtCor6.6 ATSTP13 GORK ANAC092 RS5 COR78 PDCB1 ATMYB96 AT5G65300"
GO:0051234
establishment of localization		BP1.036e-05AT1G01490 ATFRO2 AT1G02260 AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 MT1C AT1G07840 ATSYP111 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 NUP155 GAI AT1G15170 AT1G15180 AT1G15420 ATPWP2 ATBOR4 AT1G15480 ICR1 AtMYB51 AT1G18850 AT1G18980 AtCOR47 AT1G21010 AT1G22440 AT1G23000 EDF1 AT1G26470 TOM20-2 AT1G28390 ATNUDX25 AT1G30700 AT1G30960 AT1G33090 ATNUP160 AT1G35350 AT1G50400 EMB1860 ATNAS4 AT1G56500 AT1G60080 ATIRT3 TIM13 AT1G62500 AT1G62780 AT1G63660 TOM7-2 AT1G64610 LSM8 AT1G67300 IDA AT1G69250 MLP43 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 ATPIN4 AtSOT1 AT2G04090 AT2G04100 AHB1 PIP2;8 MEE15 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtGDU4 AtTic55 AT2G25355 ATCNGC15 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 NIP2;1 AT2G35730 ATTIM44-2 PIP2;2 NAKR2 AT2G37400 AT2G37890 ATWRKY33 ATMTP11 AT2G39725 ATPROT1 AT2G40430 AT2G40700 AT2G42690 AT2G42950 AT2G45730 ATCNGC12 ABCC4 AT3G01860 AT3G02190 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb AtRLP30 AT3G05500 RCI2A TRX AT3G07750 AT3G07860 LTP6 AT3G08943 LAC7 TAC1 AT3G10090 MEE67 AHB2 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATPPC3 AT3G15240 ATCOX17 ATRALF23 APUM24 ATNHD1 TOM40 AtOCT4 AT3G21540 AT3G22160 GABA-T ATRPABC24.3 AT3G22660 AMT1;5 AOC3 AtTRM11 AT3G26450 CCL PMZ AT3G46210 emb2474 COPT2 AT3G47480 AAE3 UGT72E1 ATEBP1 ATCAX3 AT3G52170 ATELP AtFBA8 AT3G53940 ATFER3 EDA7 AT3G57000 AT3G57940 AT3G58060 ATMTP3 BGLU16 AT3G60260 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. BRH1 UNE11 ATKEA2 MEE49 GLB1 AT4G04940 YAO CRF1 BASS5 AT4G15160 AtCLA1 AT4G15770 GOX3 ATIRT1 Encodes a defensin-like (DEFL) family protein. AT4G22470 AT4G22520 AT4G23670 AtG3Pp2 ACS7 AT4G26600 AT4G27640 AAC3 ARAC7 ACA10 ATPRMT5 ATSDX1 AT4G33420 ADC2 ARAC3 RHA3B MRPL11 AT4G36680 AT4G36790 PLS AT4G39670 TAAC AT5G02170 AT5G03380 ATIREG2 AT5G03850 SIR ATNAS1 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 ATGLR2.5 AAC2 ZIFL1 ATCHS AT5G14520 AT5G14580 AT5G14880 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G19090 CLT1 PHT4;5 AT5G22890 AT5G23830 ATSTP13 ATIREG3 AT5G27395 HTA7 GORK AT5G37990 AT5G38030 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 AT5G41190 ATTOM22-V ATERF-9 AtPP2-A8 AT5G46890 TIM8 AT5G52750 ATPMEPCRF ATNAS2 AGR AT5G59240 DVL18 ATEXO70H7 AT5G60730 ATNRT2.4 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G62890 ATFP3 RPS28 AT5G66540
GO:0008104
protein localization		BP1.171e-05AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 MEE67 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AtCLA1 AT4G15770 AT4G26600 AT4G27640 ARAC7 ADC2 ARAC3 MRPL11 AT4G36680 AT4G39670 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G66540
GO:0071705
nitrogen compound transport		BP1.288e-05AT1G06720 AT1G07030 MT1C GLP5 AT1G13160 ATPWP2 AT1G18980 AT1G21010 AT1G22440 AT1G28390 ATNUDX25 AT1G30700 ATNUP160 AT1G69250 AAP3 AT1G79150 ATGRP7 AtGDU4 AT2G34357 ATPROT1 AT2G40430 AT2G40700 AT3G03990 AT3G04010 anac047 RPSAb AT3G05500 LAC7 TAC1 AT3G10090 BRL3 ATPPC3 APUM24 AtOCT4 AT3G21540 AMT1;5 AAE3 UGT72E1 EDA7 ATMTP3 YAO CRF1 ATIRT1 AT4G22470 ACS7 AAC3 ATPRMT5 AT4G33420 RHA3B AT4G36790 AT5G02170 ATIREG2 AT5G03850 ATPGIP1 AtmtOM64 ATGLR2.5 AAC2 AT5G15810 TOZ AT5G17270 CLT1 PHT4;5 AT5G22890 ATSTP13 Encodes a putative amino acid transporter. ABCB27 ATERF-9 DVL18 ATNRT2.4 RPS28
GO:1901576
organic substance biosynthetic process		BP1.333e-05AT1G01100 AT1G01210 ANAC003 ATGPAT2 IMPA-6 ATCSLD5 AT1G03730 AtTPX2 AT1G04480 LIP2 encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols GLX2-4 AT1G06380 HPD encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase AT1G07070 ATSTN1 AT1G07280 ATSMO1 AT1G07930 ADT6 ATSYP111 AT1G08940 AMI1 GLP5 AT1G09590 ATATP-PRT2 LRR NRPB10 ATGLX1 RPS5 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 GAI AT1G14960 AT1G15250 ATPWP2 AT1G16220 ATSRG1 HLL AtMYB51 ATWRKY61 ATICS2 ARF5 AT1G21010 AT1G21340 ATFBP7 RAP2.4 AT1G22440 AT1G23280 RPL27A AT1G23410 AT1G25260 EDF1 AT1G26470 AT1G26880 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. AT1G27400 STZ AT1G28395 AT1G28530 ARAB-1 ATNUDT15 CARB NRPA2 AT1G29965 AT1G31660 AT1G32190 PRS2 AT1G33120 AT1G41880 AT1G42440 RAP2.6 RAP2.1 5PTASE11 AT1G48570 RACK1B ATNUC-L1 PAB8 ATMTK POLGAMMA2 PLT2 ATSPP1 AT1G52370 AT1G52930 GRI DRP5A AtDJ1B AT1G53560 ATLOX1 EMB1860 AT1G56045 NOP56 ATNAS4 AT1G56500 AT1G57660 AT1G57860 ATATP-PRT1 AT1G58170 XW6 ARR3 EMB3108 AAC42 ARP2 FMO AT1G62780 AtLPLAT2 AT1G63660 AT1G63810 AT1G64610 AT1G65510 AT1G69250 ATELF5A-3 RPL34 ATMYBL2 ATCAD1 AT1G72900 ATMKK9 AT1G73655 NRP1 ATMYB31 AT1G75670 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATGSTU20 RIP4 AtBAS AT1G79150 PPR596 WIN1 AT1G80750 ATWRKY40 At17.1 ATPIN4 ATHB-17 AT2G01630 AT2G01900 AtPP2-B5 AtPP2-B6 AtSOT1 AIR3 AT2G05830 AT2G09990 ABH1 ALD1 EMB2762 APC10 ATDGK3 AT2G19750 AT2G20210 AT2G20450 AT2G21580 ATGRP7 AtMYB70 AtWRKY15 AT2G25210 AT2G25355 encodes a protein whose sequence is similar to ACC oxidase AT2G26190 HO2 NPC2 HDA13 CKS2 AT2G28450 ATSMO2 ATRPAC14 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G31610 AT2G31790 AT2G32060 AT2G32220 ZFN2 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G33840 WDR55 CYP710A2 AT2G34810 AT2G35040 SGD9 AT2G35430 AT2G36170 BE3 RPL24A AT2G37020 AT2G37190 AT2G37600 ATDET2 ATWRKY33 ATMVD1 AT2G39390 ATMTP11 AT2G40010 AT2G40205 AtERF48 CYP98A3 BHLH100 AT-HSFB3 AT2G42690 AT2G42710 AT2G42720 RPL16A ATLEUD1 AT2G43420 AT2G43500 AT2G44860 DHDPS2 AT2G45710 AT2G45730 ATWRKY23 AT3G01820 AT3G01860 AT3G02190 AT3G03130 ATMS2 AT3G03990 anac047 RPSAb AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06040 AT3G06320 AT3G06530 AT3G06680 AT3G06700 TRX ATPRMT4B NSN1 ATYLMG1-1 AT3G07720 AT3G08030 AT3G08520 TAC1 AT3G09680 AT3G09720 OMR1 AT3G10090 AHB2 AT3G10530 AT3G10610 CYC2 AT3G11580 ATKRS-1 emb2742 AtMYB10 AT3G13040 AT3G13510 CYP90D1 AT3G13882 AT3G13940 AT3G13950 AT3G14190 AT3G14890 AtDJ1A MEE35 AT3G15460 ADS3 AT3G15940 AT3G16080 IAA26 AT3G16565 AT3G16780 RPL3P RACK1C AT3G18600 RLK902 AT3G18760 ATCAD4 AT3G19500 TOM40 PLT1 ATNADK-1 AT3G21330 AT3G22160 AT3G22230 ATRPABC24.3 AT-HSFA6B AT3G23390 AT3G23930 AT3G23940 ATMSH1 ICK3 AT3G25660 AOC3 CRF11 AT3G25940 AtMAD2 AT3G26450 CARA BR6OX2 AT3G43980 AT3G44010 ATNIT1 AT3G44590 ATHD2A AT3G45020 RPS15AD AT3G47480 AtMYB45 AT3G49080 emb1796 MYB77 CYCD3;3 ICK2 AT3G50650 AtDWF4 AT3G50685 UGT72E1 BEH1 GATL2 AT3G50800 GATA18 BCS1 AT3G51280 SSL5 ATEBP1 AT3G51950 FMT ATOFP18 ATELP AtFBA8 ATPAL2 AT3G53890 AT3G53940 FLN1 ATCDT1B ATPURM A11 AT3G55170 RPL23A2 OVA1 AT3G55750 SIB1 AT3G57010 AT3G57020 AT3G57940 AT3G58610 AT3G58640 AT3G58660 AT3G59540 AT3G59670 AT3G60245 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. AT3G60770 DHDPS ARS27A AT3G61610 AT3G61930 UBQ5 EMB3127 AtWRKY22 AtMYB55 GLB1 ATSUS3 DES-1-LIKE AT4G04940 YAO ACS11 ATNDK1 ATGIP1 AT4G10450 CRF1 BASS5 AT4G12600 AT4G12750 CYP83A1 ATGRP2 KINESIN-12A ELIP2 CYP702A2 AtCLA1 NRPD4 AT4G16141 NRPB9B AT4G16770 ATHB-2 HAT1 AT4G18440 AK-HSDH ATK1 AT4G23670 AT4G23760 PGI ATFIB2 AT4G25740 AT4G25890 ACS7 AT4G26230 AT4G26860 AT4G26870 AT4G27640 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G28840 AT4G29390 AT4G29410 ACA10 AT4G30020 AT4G30180 AT4G30800 AT4G30840 ATPRMT5 AT4G31790 AtSHMT3 ATSDX1 AtAUR1 AT4G32920 AT4G33070 AT4G33420 Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis AT4G33865 RSL2 AT4G34555 ADC2 ARAC3 RHA3B MRPL11 CSDP1 ROT3 AT4G36530 BEH2 BLH2 DEAR4 myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen ATMYB73 mtHsc70-1 AT4G39280 ATBRI1 AT4G39670 ATIPS1 ATOFP1 AT5G02050 AT5G02450 AT5G02610 HD2C AT5G03850 GYRB2 SIR ATNAS1 AT5G05180 AtCHIL AtENGase85A ATEIF3G2 AT5G06360 ATUBA2 ATPGIP2 AT5G08180 AT5G08570 PDE340 ATFLS1 anac081 AIL6 AT5G11240 AT5G11750 ATWRKY75 Rap2.6L AAC2 LEP ATCHS CARAB-AK-LYS ATIMD1 HEMG2 ATWRKY72 AT5G15510 AT5G15520 AT5G16140 VAT1 ATGSTF12 AT5G17270 AtMYB56 Cpn60alpha2 AT5G20290 AL5 AT5G21105 ATHD2 AT5G22890 IMS2 ATCPSF100 ATSOS3 AT5G27700 AT5G27770 ARF8 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) ATBR6OX ANAC092 AT5G39850 AT5G40040 RS5 GPDHp NRPB12 ATS ATERF-9 AT5G46160 AT5G46430 AT5G47210 ATERF-5 HAT2 mtACP3 AT5G47700 AT5G47930 AtNSP5 AT5G48590 AT5G48760 AT5G51310 ATMAP65-3 ATPGMP encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. ATFBR1 ATPMEPCRF AT5G53850 AT5G55140 ATNAS2 COX15 ANQ1 AT5G56670 AT5G56710 AT5G57570 AT5G57785 AtcPT4 BSK5 AT5G59240 AT5G59850 AT5G60670 ATMYB34 COBL5 PNM1 GR-RBP3 PDCB1 ANAC100 AT5G61880 AT5G62210 AT5G62300 ATMYB96 AT5G62900 BT1 ANAC102 PSAN RPS28 AT5G64420 AT5G64670 ATWRKY51 AT5G65300 BAM1 AT5G65860 AT5G66230 AT5G66580 AT5G66860 IRX15-L AT5G67510 PSBL
GO:0071732
cellular response to nitric oxide		BP1.653e-05ATMTK AT2G05830 AT3G12900 ATIRT1 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2
GO:0009987
cellular process		BP1.779e-05AT1G01100 AT1G01210 ANAC003 AT1G02260 AT1G02370 ATGPAT2 IMPA-6 ATCSLD5 AT1G03730 AtTPX2 TPR3 AT1G04480 LIP2 UGT1 UGT74E2 GLX2-4 AT1G06380 HPD AT1G07030 AT1G07070 ATSTN1 AT1G07280 ATSMO1 AT1G07930 AT1G08220 ADT6 ATSYP111 CJD1 AT1G08940 AMI1 GLP5 AT1G09590 ATATP-PRT2 AT1G09800 LRR GRP23 AT1G11240 NRPB10 ATGLX1 RPS5 AT1G12244 AT1G12650 EDF4 GAPC-2 ATPSK1 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 DECOY NUP155 GAI AT1G15170 AT1G15180 AT1G15250 AT1G15420 ATPWP2 ATBOR4 AT1G15480 ATECB2 RAD23A AT1G16220 GAPCP-2 ATSRG1 ATGSTU24 ATGSTU25 HLL ATLP-1 AtMYB51 NRP2 AT1G18850 ATWRKY61 ATICS2 AT1G18980 ATDHAR1 ARF5 AtCOR47 AHL27 AT1G21010 AT1G21340 ATFBP7 RAP2.4 Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth. AT1G22440 AT1G23000 AT1G23100 AT1G23280 RPL27A AT1G23410 AT1G25260 EDF1 AT1G26470 AT1G26880 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. TOM20-2 AT1G27400 STZ AT1G28390 AT1G28395 AT1G28530 ARAB-1 ATNUDT15 CARB NRPA2 AT1G29965 ATNUDX25 AT1G30700 AT1G31660 AT1G32190 PRS2 AT1G33090 AT1G33120 AT1G33260 ATNUP160 AT1G35350 ATNR2 AT1G41880 AT1G42440 RAP2.6 RAP2.1 5PTASE11 DYW1 JAZ4 AT1G48570 RACK1B ATNUC-L1 PAB8 PUB26 ATMTK AT1G50400 POLGAMMA2 AT1G50920 AGC2-3 PLT2 ATSPP1 AT1G52370 AT1G52930 GRI DRP5A AtDJ1B AT1G53560 ALDH7B4 ATLOX1 EMB1860 AT1G56045 NOP56 ATNAS4 AT1G56500 SVB AT1G57660 AT1G57860 ATATP-PRT1 AT1G58170 XW6 AT1G59860 ARR3 EMB3108 AT1G60080 AAC42 ATIRT3 AT1G61370 TIM13 ARP2 PPR336 FMO AT1G62780 AtLPLAT2 AT1G63660 AT1G63720 IMP4 AT1G63810 DAA1 AT1G64610 AT1G65510 LSM8 AT1G67300 ACR4 AT1G69210 AT1G69250 ATELF5A-3 RPL34 AT1G69790 AMY3 MLP43 ATMYBL2 AtdNK TFIIIA EDA25 ATCAD1 AT1G72900 AT1G72920 TIR AT1G72940 APC13 ATMKK9 AT1G73655 Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. ENO1 ATBS1 CYP98A9 NRP1 ATMYB31 AT1G75670 AHL29 CDKB2;1 CML38 AAP3 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATGSTU20 RIP4 AtBAS AT1G79150 PPR596 AT1G80440 WIN1 AT1G80750 ATWRKY40 AtJ8 At17.1 ATPIN4 ATHB-17 AT2G01630 AT2G01900 AtPP2-B5 AtPP2-B6 ATGSTZ1 ATEXP15 AtSOT1 RGF3 AT2G04090 AT2G04100 AIR3 AT2G05120 AT2G05830 PFD1 AT2G09990 ABH1 ALD1 UGT73B5 UGT73B4 CYP40 AHB1 PRORP2 PIP2;8 MEE15 EMB2762 STY8 APC10 SDH1-2 ATDGK3 AT2G19385 ATPRMT1A AT2G19750 AT2G20210 AT2G20450 EDA27 AT2G20940 AT2G21510 AT2G21580 ATGRP7 EMB2001 MEL4 AtMYB70 AtWRKY15 ATMES1 AT2G24580 AtENODL14 AT2G25210 AT2G25355 encodes a protein whose sequence is similar to ACC oxidase PYL2 AT2G26190 HO2 CYCB1;4 NPC2 HDA13 CKS2 ATCNGC15 AT2G28450 AT2G28600 AT2G28780 ATSMO2 ATGSTU6 ATGSTU1 ATRPAC14 UGT87A2 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G31610 AT2G31790 AT2G32060 AT2G32220 ZFN2 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G33840 WDR55 NIP2;1 CYP710A2 AT2G34810 AT2G35040 SGD9 AT2G35430 AT2G35730 ATTIM44-2 AT2G36170 BE3 RPL24A AT2G37020 PIP2;2 AT2G37190 AT2G37400 AT2G37600 ATEXP3 AKR4C8 AT2G37890 ATWRKY33 ATMVD1 HTA8 AT2G39390 ATMTP11 AT2G39725 AT2G40010 AT2G40205 AtERF48 AT2G40360 AT2G40700 CYP98A3 BHLH100 AT2G41380 AT-HSFB3 AT2G41730 AT2G42690 AT2G42710 AT2G42720 RPL16A AT2G42950 ATLEUD1 AT2G43220 AT2G43500 EMB2777 AT2G44860 cycp3;1 ATATG8E GCP1 DHDPS2 AT2G45710 AT2G45730 ABIL1 ATCNGC12 AT2G46850 ATWRKY23 AT2G47500 ABCC4 EDA13 RKF3 AT3G01810 AT3G01820 AT3G01860 AT3G02190 AT3G02220 AT3G02640 AT3G03130 ATMS2 AT3G03920 AT3G03990 anac047 RPSAb ATNEK2 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AtRLP30 AT3G05560 AT3G05810 APC11 RCI2A AT3G06040 AT3G06320 AT3G06530 AT3G06680 AT3G06700 TRX AT3G06750 MORF3 ATPRMT4B NSN1 AT3G07310 ATPUB9 AIR12 ATYLMG1-1 AT3G07720 AT3G07750 AT3G07860 AT3G08030 AT3G08520 ATSIK LAC7 TAC1 AT3G09680 AT3G09700 AT3G09720 PIP5K9 OMR1 AT3G10090 AHB2 AT3G10530 AT3G10610 ATMES17 CYC2 AT3G11580 ATKRS-1 AT3G12340 emb2742 NANA DECR AtMYB10 AT3G12860 AT3G12900 BRG3 AT3G13040 AT3G13230 BRL3 AT3G13510 AT3G13882 AT3G13940 AT3G13950 LSM1B AT3G14190 SRF7 AT3G14890 ATPPC3 AtDJ1A RIP1 MEE35 ATCOX17 AT3G15460 ADS3 AT3G15940 NAI2 AT3G16080 JAL30 IAA26 AT3G16565 ATRALF23 AT3G16780 APUM24 RPL3P RACK1C AT3G18600 ATPUB29 RLK902 AT3G18760 ATPREP1 PUB25 AT3G19440 ATCAD4 ATNHD1 AT3G19500 TOM40 AtOCT4 PLT1 ATNADK-1 AT3G21300 AT3G21330 AT3G21540 AT3G22160 GABA-T AT3G22230 ATRPABC24.3 AT3G22660 RDM1 AT3G22750 AT-HSFA6B AtCML11 AT3G23390 AT3G23620 ATIPT7 AtGRP4 AT3G23930 AT3G23940 ATGR1 ATMSH1 ICK3 IDL1 AT3G25660 AOC3 CRF11 AT3G25940 AtMAD2 AtTRM11 AT3G26450 CCL ATPHB4 CARA PMZ AT3G43980 AT3G44010 ATNIT1 AtNIT3 AT3G44590 ATHD2A AtXTH31 AT3G45020 RPS15AD AT3G46210 FLA4 emb2474 COPT2 ATSMC2 AT3G47480 BIR6 AT3G48900 AtMYB45 AAE3 AT3G49080 emb1796 AT3G49630 AT3G49640 AT3G49810 MYB77 CYCD3;3 ICK2 AT3G50650 AtDWF4 AT3G50685 UGT72E1 BEH1 GATL2 AT3G50800 AT3G50850 GATA18 BCS1 AT3G51280 SSL5 IMK2 ATEBP1 ATCAX3 AT3G51950 FMT AT3G52170 ATOFP18 ATELP AtFBA8 AT3G53220 ATPAL2 AT3G53890 AT3G53940 FLN1 AT3G54150 ATCDT1B ATPURM A11 AT3G55170 RPL23A2 OVA1 AT3G55750 ROC2 ATFER3 IMK3 SIB1 EDA7 AT3G57000 AT3G57010 AT3G57020 AT3G57940 AT3G58060 AT3G58610 AT3G58640 AT3G58660 ATMTP3 AT3G59540 AT3G59670 AT3G59710 BGLU16 AT3G60245 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. CER7 AT3G60770 DHDPS ARS27A BRH1 AT3G61610 AT3G61930 UBQ5 ATGSTF13 AtTIR1 GAE3 EMB3127 AtWRKY22 MEE49 AtMYB55 AT4G01870 GLB1 ATSUS3 DES-1-LIKE AT4G04940 YAO ACS11 ATNDK1 ATGIP1 RH39 ATDET1 AT4G10450 MTSSB AT4G11100 CRF1 RHA1B BASS5 AT4G12600 AT4G12750 AT4G12830 CYP83A1 ATGRP2 ATWEX SBP1 KINESIN-12A ELIP2 CYP702A2 AtCLA1 MAA3 AT4G15640 AT4G15770 NRPD4 AT4G16141 NRPB9B AT4G16670 ATHB-2 AT4G17000 HAT1 ALMT12 5PTASE2 GOX3 AT4G18440 AT4G18593 CYP707A1 ATIRT1 AK-HSDH MORF1 AAH smB ATK1 SCRL26 Encodes a defensin-like (DEFL) family protein. AT4G22290 AT4G22530 AT4G23670 AT4G23760 ATTRE1 EMB140 AT4G24350 PGI TPD1 AtG3Pp2 ATFKBP53 AtSAP10 ATFIB2 AT4G25730 AT4G25740 AT4G25790 ATXTH14 AT4G25890 ACS7 AT4G26230 AT4G26600 AT4G26860 AT4G26870 AT4G27640 AT4G27660 ATEXPB3 AAC3 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G28840 ARAC7 PRF4 AT4G29390 AT4G29410 ATPRMT11 ACA10 AT4G30020 AT4G30180 RUXF BRS1 AT4G30660 AT4G30800 scpl29 AT4G30840 ATPRMT5 AT4G31790 AtENODL15 CYP82C4 AtSHMT3 ATSDX1 AtAUR1 AT4G32920 AT4G33070 LKR AtCDC20.2 AT4G33420 Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis AT4G33865 RSL2 AT4G34555 ADC2 ARAC3 RHA3B MRPL11 ATPLDDELTA CSDP1 ROT3 AT4G36530 AT4G36680 BEH2 AT4G36790 BLH2 DEAR4 AT4G37090 myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen ATMYB73 mtHsc70-1 STY46 AT4G38660 ATCSP2 AT4G38890 AT4G39280 ATBRI1 PLS AT4G39670 ATIPS1 TAAC ATOFP1 AT5G02050 AT5G02080 AT5G02450 AT5G02580 AT5G02610 GSTL1 ATIREG2 HD2C AT5G03850 GYRB2 SIR ATNAS1 AT5G05180 AtCHIL PYL5 AtENGase85A UGT76C2 ATEIF3G2 AT5G06360 AT5G06410 ATUBA2 AT5G06630 EXT10 ATPGIP1 ATPGIP2 AT5G08180 AT5G08570 AT5G08600 PDE340 anac081 AtmtOM64 AIL6 ATGLR2.5 AT5G11240 AT5G11750 ATWRKY75 Rap2.6L AAC2 ZIFL1 AT5G13830 LEP ATCHS CARAB-AK-LYS ATIMD1 HEMG2 AT5G14580 AT5G14600 AT5G14880 ATWRKY72 AT5G15510 AT5G15520 AT5G15550 AT5G15750 AT5G15810 AT5G16140 VAT1 TOZ AT5G17160 ATGSTF12 AT5G17270 AT5G17670 AtMYB56 Cpn60alpha2 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase AT5G20160 AT5G20290 PHT4;5 AL5 BGAL7 AT5G20950 AT5G21105 AT5G22100 AtNIT4 ATHD2 AT5G22890 IMS2 ATCPSF100 ATSOS3 PGL4 ATSTP13 ATIREG3 HTA7 AT5G27700 AT5G27770 AT5G35910 BGLU42 ARF8 GORK encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G38030 AT5G38200 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 ANAC092 AT5G39850 AT5G40040 RS5 GPDHp NRPB12 DRB5 AT5G41190 BTI3 ATS ATTOM22-V ATERF-9 AtPP2-A8 CYP707A3 AT5G46160 AT5G46430 AT5G47210 ATERF-5 HAT2 mtACP3 AT5G47700 AT5G47930 GFA2 ATXTH20 AtNSP5 AT5G48240 AT5G48360 AT5G48590 AT5G48760 AT5G49900 AT5G50180 TIM8 AT5G51310 ATMAP65-3 ATPGMP encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. AT5G52380 ATFBR1 AT5G52750 ATPMEPCRF AT5G53850 AHL AT5G55140 EDM2 AT5G55400 OLI2 ATNAS2 COX15 ANQ1 AT5G56670 AT5G56710 AGR AT5G57170 RID2 AT5G57570 AtcPT4 BSK5 AT5G59240 AT5G59270 ATEXO70H7 AT5G59850 AT5G60270 AT5G60670 ATNRT2.4 ATMYB34 COBL5 PNM1 GR-RBP3 PDCB1 ANAC100 AT5G61510 AT5G61880 AT5G62030 PRH75 AT5G62210 AT5G62300 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ATMYB96 AT5G62890 AT5G62900 FOLB2 BT1 ATFP3 ANAC102 AT5G63940 PSAN RPS28 AT5G64250 AT5G64420 ATCMPG2 AT5G64670 ATWRKY51 AT5G65300 BAM1 AT5G65860 AT5G66080 AT5G66230 AT5G66540 AT5G66580 AT5G66860 IRX15-L ATEB1C RHS19 AT5G67510 PSBL
GO:0019693
ribose phosphate metabolic process		BP1.790e-05LIP2 GAPC-2 ATPWP2 AT1G23280 AT1G28530 ATNUDT15 AT1G31660 AT1G48570 RACK1B ATNUC-L1 AT1G52930 EMB1860 NOP56 EMB3108 AT1G62780 AT1G63660 AT1G63810 AT1G79150 PPR596 EMB2762 SDH1-2 WDR55 AT2G35040 AT2G37020 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G15460 AT3G16780 RACK1C AT3G18600 TOM40 AT3G23940 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AtFBA8 AT3G53940 ATPURM AT3G57940 AT3G58660 AT4G04940 YAO ATNDK1 CRF1 CYP83A1 AT4G18440 ATFIB2 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 AT4G31790 AT5G02050 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 PGL4 AT5G47210 ATPGMP PNM1 GR-RBP3 AT5G61880 PSAN AT5G64670
GO:0097305
response to alcohol		BP1.790e-05UGT74E2 AT1G11210 EDF4 GAI ATSRG1 AtMYB51 ARF5 AtCOR47 ERD10 STZ RAP2.6 5PTASE11 RACK1B ALDH7B4 ATLOX1 AT1G63720 AT1G64610 ATHVA22C ATMYBL2 ATBS1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATWRKY40 ABH1 PIP2;8 AT2G23120 PYL2 AT2G32020 AT2G35290 PIP2;2 AtERF48 AtRLP30 RCI2A ATPUB9 AT3G11110 ATRALF23 RACK1C AT3G22160 AOC3 PMZ emb1796 AtDWF4 LTI30 AT3G54150 BRH1 MARD1 UNE11 AT4G01870 CRF1 ATDI21 5PTASE2 ATIRT1 BRS1 ADC2 ATPLDDELTA ATMYB73 ATCSP2 ATBRI1 AT4G39670 HD2C PYL5 ATPGIP1 ATS3 Rap2.6L AtCor6.6 ATSTP13 GORK ANAC092 RS5 COR78 ATMYB96 AT5G65300
GO:0071248
cellular response to metal ion		BP2.197e-05ATMTK AT2G05830 AT3G12900 SBP1 ATIRT1 CYP82C4 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2
GO:0090407
organophosphate biosynthetic process		BP2.395e-05ATGPAT2 LIP2 GAPC-2 ATPWP2 AT1G23280 AT1G23410 AT1G28395 AT1G28530 ATNUDT15 AT1G31660 PRS2 AT1G42440 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G52930 EMB1860 NOP56 AT1G56500 EMB3108 ARP2 AT1G62780 AT1G63660 AT1G63810 AT1G65510 AT1G69250 AT1G79150 PPR596 EMB2762 HO2 NPC2 HDA13 WDR55 AT2G35040 AT2G37020 ATMVD1 ATMTP11 AT2G45730 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G09720 AT3G10530 AT3G10610 ATKRS-1 emb2742 AT3G15460 ADS3 AT3G16780 RACK1C AT3G18600 TOM40 ATNADK-1 AT3G23940 AT3G25660 CARA ATHD2A AT3G49080 emb1796 ATEBP1 AT3G53940 ATPURM AT3G57940 AT3G58610 AT3G58660 AT3G59670 GLB1 AT4G04940 YAO ATNDK1 ATGIP1 CRF1 AT4G12600 CYP83A1 AtCLA1 AT4G18440 AK-HSDH AT4G23760 PGI ATFIB2 AT4G26860 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 ATSDX1 CSDP1 mtHsc70-1 AT4G39280 ATIPS1 AT5G02050 AT5G05180 AT5G08180 PDE340 AT5G11240 Cpn60alpha2 ATHD2 ATCPSF100 GPDHp AT5G47210 ATPGMP AT5G59240 PNM1 GR-RBP3 AT5G61880 AT5G64420 AT5G64670 AT5G65860
GO:0051168
nuclear export		BP2.449e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 ATPRMT5 AT5G03850 AT5G15810 TOZ AT5G17270 RPS28
GO:0051179
localization		BP2.459e-05AT1G01490 ATFRO2 AT1G02260 AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 MT1C AT1G07840 ATSYP111 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 NUP155 GAI AT1G15170 AT1G15180 AT1G15420 ATPWP2 ATBOR4 AT1G15480 ICR1 AtMYB51 AT1G18850 AT1G18980 AtCOR47 AT1G21010 AT1G22440 AT1G23000 EDF1 AT1G26470 TOM20-2 AT1G28390 ATNUDX25 AT1G30700 AT1G30960 AT1G33090 ATNUP160 AT1G35350 AT1G50400 EMB1860 ATNAS4 AT1G56500 AT1G60080 ATIRT3 TIM13 AT1G62500 AT1G62780 AT1G63660 TOM7-2 AT1G64610 LSM8 AT1G67300 IDA AT1G69250 MLP43 AT1G72900 APC13 AT1G75670 AHL29 AAP3 AT1G79150 PPR596 ATWRKY40 ATPIN4 AtPP2-B6 AtSOT1 AT2G04090 AT2G04100 ABH1 AHB1 PIP2;8 MEE15 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtGDU4 AtTic55 AT2G25355 ATCNGC15 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 NIP2;1 AT2G35730 ATTIM44-2 PIP2;2 NAKR2 AT2G37400 AT2G37890 ATWRKY33 ATMTP11 AT2G39725 ATPROT1 AT2G40430 AT2G40700 AT2G42690 AT2G42950 AT2G45730 ATCNGC12 ABCC4 AT3G01860 AT3G02190 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb AtRLP30 AT3G05500 RCI2A TRX AT3G07750 AT3G07860 LTP6 AT3G08943 LAC7 TAC1 AT3G10090 MEE67 AHB2 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATPPC3 AT3G15240 ATCOX17 ATRALF23 APUM24 ATNHD1 TOM40 AtOCT4 AT3G21540 AT3G22160 GABA-T ATRPABC24.3 AT3G22660 AtCML11 AMT1;5 AOC3 AtTRM11 AT3G26450 CCL PMZ AT3G46210 emb2474 COPT2 AT3G47480 AAE3 emb1796 UGT72E1 BCS1 ATEBP1 ATCAX3 AT3G52170 ATELP AtFBA8 AT3G53940 ATFER3 EDA7 AT3G57000 AT3G57940 AT3G58060 ATMTP3 BGLU16 AT3G60260 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. BRH1 UNE11 ATKEA2 MEE49 GLB1 AT4G04940 YAO CRF1 BASS5 AT4G15160 AtCLA1 AT4G15770 5PTASE2 GOX3 ATIRT1 Encodes a defensin-like (DEFL) family protein. AT4G22470 AT4G22520 AT4G23670 AtG3Pp2 ACS7 AT4G26600 AT4G27640 AAC3 ARAC7 ACA10 ATPRMT5 ATSDX1 AT4G33420 ADC2 ARAC3 RHA3B MRPL11 AT4G36680 AT4G36790 PLS AT4G39670 TAAC AT5G02170 AT5G03380 ATIREG2 AT5G03850 SIR ATNAS1 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 ATGLR2.5 AAC2 ZIFL1 ATCHS AT5G14520 AT5G14580 AT5G14880 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G19090 CLT1 PHT4;5 AT5G22890 AT5G23830 ATSTP13 ATIREG3 AT5G27395 HTA7 GORK AT5G37990 AT5G38030 AT5G38720 Encodes a putative amino acid transporter. AT5G38890 ABCB27 AT5G41190 ATTOM22-V ATERF-9 AtPP2-A8 AT5G46890 TIM8 AT5G52750 ATPMEPCRF AT5G55400 ATNAS2 AGR AT5G59240 DVL18 ATEXO70H7 AT5G60730 ATNRT2.4 GR-RBP3 PDCB1 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G62890 ATFP3 RPS28 AT5G66540
GO:0008152
metabolic process		BP2.734e-05AT1G01100 AT1G01210 ATFRO2 ANAC003 ATGPAT2 IMPA-6 ATCSLD5 AT1G03230 AT1G03730 AtTPX2 TPR3 AT1G04480 LIP2 UGT1 UGT74E2 encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols GLX2-4 AT1G06380 HPD encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase AT1G06720 AT1G07070 ATSTN1 AT1G07280 ATSMO1 AT1G07930 ADT6 ATSYP111 CJD1 AT1G08940 AMI1 GLP5 AT1G09590 ATATP-PRT2 AT1G09800 LRR GRP23 scpl31 AT1G11240 NRPB10 ATGLX1 RPS5 AT1G12244 AT1G12650 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 DECOY NUP155 GAI AT1G14960 AT1G15250 ATPWP2 AT1G15480 ATECB2 RAD23A AT1G16220 GAPCP-2 ATSRG1 ATGSTU24 ATGSTU25 HLL AtMYB51 AT1G18850 ATWRKY61 ATICS2 ATDHAR1 ARF5 AtCOR47 AT1G21010 AT1G21340 ATFBP7 RAP2.4 AtUGT85A2 AT1G22440 AT1G22950 AT1G23000 AT1G23100 AT1G23280 RPL27A AT1G23410 AT1G25260 EDF1 AT1G26390 AT1G26470 AT1G26880 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. AT1G27400 STZ AT1G28390 AT1G28395 AT1G28530 AT1G28580 ARAB-1 ATNUDT15 AT1G29180 CARB NRPA2 AT1G29965 ATNUDX25 AT1G30700 AT1G31660 AT1G32190 PRS2 AT1G33120 AT1G33260 ATNUP160 ATNR2 AT1G41880 AT1G42440 RAP2.6 RAP2.1 5PTASE11 DYW1 AT1G48570 RACK1B ATNUC-L1 PAB8 PUB26 ATMTK AT1G50400 POLGAMMA2 AT1G50920 AGC2-3 PLT2 ATSPP1 IAR3 AT1G52370 AT1G52930 GRI DRP5A AtDJ1B AT1G53530 AT1G53560 GLL22 ALDH7B4 ATLOX1 EMB1860 AT1G56045 NOP56 ATNAS4 AT1G56500 AT1G57660 AT1G57860 ATATP-PRT1 AT1G58170 XW6 AT1G59860 ARR3 AT1G59960 AT1G59970 EMB3108 AT1G60080 AAC42 AT1G61370 TIM13 ARP2 FMO AT1G62780 AtLPLAT2 AT1G63660 IMP4 AT1G63810 AT1G64610 AT1G64760 CYP89A7 CYP89A5 AT1G65510 LSM8 AT1G66250 IDA ACR4 AT1G69250 ATELF5A-3 RPL34 AT1G69790 AMY3 ATMYBL2 AtdNK ATCAD1 AT1G72900 AT1G72940 APC13 ATMKK9 AT1G73655 Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. ENO1 CYP98A9 NRP1 ATMYB31 AT1G75670 AHL29 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATGSTU20 RIP4 AtBAS AT1G79150 PPR596 WIN1 AT1G80750 ATWRKY40 AtJ8 At17.1 ATPIN4 ATHB-17 AT2G01630 AT2G01900 AtPP2-B5 AtPP2-B6 ATGSTZ1 ATEXP15 AtSOT1 RGF3 AIR3 AT2G05830 PFD1 AT2G09990 ABH1 ALD1 UGT73B5 UGT73B4 CYP40 AHB1 PRORP2 EMB2762 AT2G17600 STY8 APC10 SDH1-2 ATDGK3 ATPRMT1A AT2G19750 AT2G20210 AT2G20450 EDA27 NDB4 AT2G20940 AT2G21510 AT2G21580 ATGRP7 SCPL12 MEL4 AtMYB70 AtWRKY15 ATMES1 AT2G24580 AtTic55 AtENODL14 AT2G25210 AT2G25355 encodes a protein whose sequence is similar to ACC oxidase PYL2 AT2G26190 HO2 CYCB1;4 NPC2 HDA13 CKS2 AT2G28450 AT2G28600 ATSMO2 ATGSTU6 ATGSTU1 ATRPAC14 NDA2 UGT87A2 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G31610 AT2G31790 AT2G32020 AT2G32060 AT2G32220 ZFN2 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G33840 WDR55 AT2G34357 CYP710A2 AT2G34810 AT2G35040 SGD9 AT2G35430 AT2G35730 AT2G36170 BE3 RPL24A AT2G37020 AT2G37190 AT2G37600 AKR4C8 ATDET2 ATWRKY33 ATMVD1 HTA8 AT2G39020 AT2G39390 ATMTP11 AT2G40010 AT2G40205 AtERF48 AT2G40360 AT2G40430 AT2G40700 CYP98A3 BHLH100 AT2G41250 AT2G41380 AT-HSFB3 AT2G41730 AT2G42690 AT2G42710 AT2G42720 RPL16A ATLEUD1 AT2G43220 AT2G43420 AT2G43500 EMB2777 AT2G44860 cycp3;1 ATATG8E GCP1 DHDPS2 AT2G45710 AT2G45730 AT2G46850 ATWRKY23 EDA13 RKF3 AT3G01310 AT3G01810 AT3G01820 AT3G01860 AT3G02190 AT3G02220 AT3G02640 AT3G03130 ATMS2 AT3G03920 AT3G03980 AT3G03990 AT3G04010 anac047 RPSAb ATNEK2 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AtRLP30 AT3G05560 RCI2A AT3G06040 AT3G06320 AT3G06530 AT3G06680 AT3G06700 TRX MORF3 ATPRMT4B NSN1 AT3G07320 ATPUB9 AIR12 ATYLMG1-1 AT3G07720 AT3G07750 AT3G08030 AT3G08520 ATSIK LAC7 TAC1 AT3G09680 AT3G09700 AT3G09720 PIP5K9 OMR1 AT3G10090 AHB2 AT3G10530 AT3G10610 ATMES17 AT3G11210 UGT76B1 CYC2 AT3G11580 ATKRS-1 scpl16 SCPL15 AT3G12340 emb2742 NANA DECR AtMYB10 AT3G12900 AT3G13040 AT3G13230 BRL3 AT3G13510 CYP90D1 AT3G13882 AT3G13940 AT3G13950 LSM1B AT3G14190 SRF7 CYP72A7 AT3G14890 ATPPC3 AtDJ1A RIP1 MEE35 AT3G15460 ADS3 AT3G15940 AT3G16080 JAL30 IAA26 AT3G16565 AT3G16780 APUM24 RPL3P RACK1C AT3G18600 ATPUB29 RLK902 AT3G18760 ATPREP1 PUB25 AT3G19440 ATCAD4 AT3G19500 TOM40 CYP705A20 CYP705A23 AtOCT4 PLT1 ATNADK-1 AT3G21300 AT3G21330 AT3G21540 AT3G22160 GABA-T AT3G22230 ATRPABC24.3 AT3G22660 RDM1 AT3G22750 AT-HSFA6B AT3G23390 AT3G23620 ATIPT7 AtGRP4 AT3G23930 AT3G23940 ATGR1 ATMSH1 ICK3 AT3G25660 AOC3 CRF11 AT3G25940 AtMAD2 AtTRM11 AT3G26450 ATPHB4 CARA AT3G27950 PMZ BR6OX2 AT3G43980 AT3G44010 ATNIT1 AtNIT3 AT3G44590 ATHD2A AtXTH31 AT3G45020 RPS15AD AT3G46210 emb2474 AT3G46700 AT3G47000 ATSMC2 AT3G47480 BIR6 CEP3 ATCXE12 AT3G48900 AtMYB45 AAE3 AT3G49080 emb1796 AT3G49630 AT3G49640 AT3G49810 MYB77 CYCD3;3 ICK2 AT3G50650 AtDWF4 AT3G50685 UGT72E1 BEH1 GATL2 AT3G50800 AT3G50850 GATA18 BCS1 AT3G51280 SSL5 IMK2 ATEBP1 ATCAX3 AT3G51950 FMT ATOFP18 ATELP AtFBA8 UGT73C7 AT3G53220 AtCDC48B ATPAL2 AT3G53890 AT3G53940 FLN1 AT3G54150 ATCDT1B ATPURM A11 AT3G55170 RPL23A2 AT3G55290 OVA1 AT3G55430 AT3G55750 ROC2 ATFER3 IMK3 SIB1 EDA7 AT3G57000 AT3G57010 AT3G57020 AT3G57940 AT3G58470 AT3G58610 AT3G58640 AT3G58660 ATMTP3 AT3G59540 AT3G59670 AT3G59710 BGLU16 AT3G60245 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. CER7 AT3G60770 DHDPS ARS27A AT3G61610 AT3G61930 UBQ5 AT3G62280 ATGSTF13 AtTIR1 PLA GAE3 EMB3127 AtWRKY22 MEE49 AtMYB55 AT4G01870 GLB1 ATSUS3 ATMSRB6 DES-1-LIKE AT4G04940 YAO ACS11 AT4G08790 ATNDK1 ATGIP1 RH39 ATDET1 AT4G10450 AtGH9C3 MTSSB AT4G11100 CRF1 RHA1B BASS5 AT4G12600 AT4G12750 AT4G12830 CYP83A1 ATGRP2 ATWEX SBP1 KINESIN-12A ELIP2 CYP702A2 CYP702A3 CYP705A2 CYP705A3 AtCLA1 AT4G15640 AT4G15770 NRPD4 AT4G16141 NRPB9B AT4G16770 ATHB-2 HAT1 5PTASE2 GOX3 AT4G18440 AT4G18593 CYP707A1 AK-HSDH MORF1 AAH smB ATK1 AT4G22290 AT4G22530 AT4G23670 AT4G23760 ATTRE1 EMB140 AT4G24350 PGI ATFKBP53 AtSAP10 ATFIB2 AT4G25730 AT4G25740 ATXTH14 AT4G25890 ACS7 AT4G26230 AT4G26600 AT4G26860 AT4G26870 AT4G27640 BGLU10 NDB1 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G28830 AT4G28840 PRF4 AT4G29390 AT4G29410 ATPRMT11 ACA10 AT4G30020 CDEF1 AT4G30180 RUXF BRS1 AT4G30800 scpl29 AT4G30840 ATPRMT5 AT4G31790 AtENODL15 CYP82C4 AtSHMT3 ATSDX1 AtAUR1 AT4G32920 AT4G33070 LKR AT4G33420 AT4G33540 Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis AT4G33865 RSL2 AT4G34480 AT4G34555 ADC2 ARAC3 RHA3B MRPL11 ATPLDDELTA CSDP1 ROT3 AT4G36530 BEH2 BLH2 DEAR4 AtPLAIVA myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen ATMYB73 CYP81H1 CYP81D5 CYP81D8 mtHsc70-1 STY46 ATCSP2 AT4G38890 AT4G39280 ATBRI1 AT4G39670 ATIPS1 TAAC ATOFP1 AT5G02050 AT5G02450 AT5G02580 AT5G02610 GSTL1 AT5G03490 HD2C AT5G03850 GYRB2 CYP84A4 SIR ATNAS1 AT5G05180 AtCHIL AtENGase85A UGT76C2 AT5G05880 ATEIF3G2 AT5G06360 AT5G06410 ATUBA2 ATPGIP1 ATPGIP2 AT5G07030 AT5G08180 AT5G08570 AT5G08600 PDE340 ATFLS1 anac081 AIL6 CYP81K2 AT5G11240 AT5G11750 ATWRKY75 Rap2.6L AAC2 AT5G13830 LEP ATCHS CARAB-AK-LYS ATIMD1 HEMG2 AT5G14520 AT5G14580 AT5G14600 ATWRKY72 AT5G15180 AT5G15510 AT5G15520 AT5G15550 AT5G15810 AT5G16140 VAT1 TOZ AT5G17040 AT5G17160 ATGSTF12 AT5G17270 AT5G17670 AtMYB56 Cpn60alpha2 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase AT5G20160 AT5G20290 AL5 BGAL7 AT5G20950 AT5G21105 AT5G22100 AtNIT4 ATHD2 AT5G22890 IMS2 ATCPSF100 ATSOS3 PGL4 ATSTP13 AT5G27700 AT5G27770 AT5G35910 BGLU42 ARF8 AT5G38000 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G38200 ATBR6OX ANAC092 AT5G39850 AT5G40040 RS5 AT5G40590 GPDHp NRPB12 DRB5 AT5G41190 ATS encodes a protein whose sequence is similar to ACC oxidase ATERF-9 AT5G44730 CYP707A3 AT5G46160 AT5G46430 AT5G47210 ATERF-5 HAT2 mtACP3 AT5G47700 AT5G47930 GFA2 ATXTH20 AtNSP5 AT5G48240 AT5G48360 AT5G48590 AT5G48760 AT5G49900 AT5G50180 TIM8 AT5G51310 ATMAP65-3 ATPGMP AT5G51830 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. ATFBR1 AT5G52750 ATPMEPCRF AT5G53850 AHL AT5G55140 AT5G55180 OLI2 ATNAS2 COX15 ANQ1 AT5G56670 AT5G56710 RID2 AT5G57570 AT5G57785 AtcPT4 BSK5 AT5G59240 AT5G59270 AT5G59850 AT5G60270 AT5G60670 AT5G60730 ATMYB34 COBL5 PNM1 GR-RBP3 PDCB1 ANAC100 AT5G61510 AT5G61880 AT5G62030 PRH75 AT5G62210 AT5G62300 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ATMYB96 AT5G62900 FOLB2 BT1 ANAC102 UVR8 AT5G63940 PSAN RPS28 AT5G64250 AT5G64420 ATCMPG2 AT5G64670 ATWRKY51 AT5G65205 AT5G65300 BAM1 AT5G65860 AT5G66080 AT5G66230 AT5G66540 AT5G66580 AT5G66860 IRX15-L ATEB1C RHS19 AT5G67510 PSBL
GO:0009414
response to water deprivation		BP2.779e-05ATCSLD5 UGT74E2 AT1G11210 AtCOR47 ERD10 RAP2.4 STZ RAP2.6 RAP2.1 ALDH7B4 AT1G63720 ATHVA22C ATGRP7 AT2G23120 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. PIP2;2 AKR4C8 ATWRKY33 BHLH100 ABCC4 LTP6 AtOCT4 AT3G22160 ATRH9 AtGRP4 PMZ AT3G44380 LTI30 ATSUS3 ATGRP2 ATDI21 5PTASE2 AT4G30660 ADC2 CSDP1 ATCSP2 HD2C ATRH25 ATWRKY75 Rap2.6L ZIFL1 AtCor6.6 ATSTP13 GORK ANAC092 RS5 CYP707A3 COR78 ATMYB96
GO:0009415
response to water		BP3.693e-05ATCSLD5 UGT74E2 AT1G11210 AtCOR47 ERD10 RAP2.4 STZ RAP2.6 RAP2.1 ALDH7B4 AT1G63720 ATHVA22C ATGRP7 AT2G23120 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. PIP2;2 AKR4C8 ATWRKY33 BHLH100 ABCC4 LTP6 AtOCT4 AT3G22160 ATRH9 AtGRP4 PMZ AT3G44380 LTI30 ATSUS3 ATGRP2 ATDI21 5PTASE2 AT4G30660 ADC2 CSDP1 ATCSP2 HD2C ATRH25 ATWRKY75 Rap2.6L ZIFL1 AtCor6.6 ATSTP13 GORK ANAC092 RS5 CYP707A3 COR78 ATMYB96
GO:0033036
macromolecule localization		BP3.835e-05AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07840 ATSYP111 AT1G08940 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G60080 TIM13 AT1G62500 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G72900 APC13 AT1G75670 AHL29 AAP3 AT1G79150 PPR596 ATWRKY40 AtPP2-B6 AtSOT1 ABH1 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 LTP6 AT3G08943 AT3G10090 MEE67 AT3G12340 AT3G12390 AT3G12860 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 emb1796 BCS1 ATEBP1 AT3G52170 ATELP EDA7 AT3G57000 AT3G57940 MEE49 AT4G04940 YAO CRF1 AT4G15160 AtCLA1 AT4G15770 5PTASE2 AT4G22470 AT4G22520 AT4G26600 AT4G27640 ARAC7 ATPRMT5 ADC2 ARAC3 MRPL11 AT4G36680 AT4G39670 AT5G03850 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V AT5G46890 TIM8 ATPMEPCRF AT5G59240 GR-RBP3 PDCB1 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540
GO:0010033
response to organic substance		BP3.913e-05ATFRO2 ATCSLD5 UGT1 UGT74E2 encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols ATSYP111 AT1G08940 LRR AT1G11210 EDF4 GAI ATSRG1 ATGSTU24 ATGSTU25 AtMYB51 ATDHAR1 ARF5 AtCOR47 ERD10 EDF1 STZ AT1G30700 ATNUP160 RAP2.6 5PTASE11 JAZ4 RACK1B ATMTK GRI ALDH7B4 ATLOX1 ARR3 AT1G63720 AT1G64610 LSM8 IDA ACR4 ATHVA22C ATMYBL2 AT1G72900 APC13 ATMKK9 ATBS1 ATMYB31 AT1G75580 AHL29 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. AT1G80440 ATWRKY40 MLP328 ATGSTZ1 AtSOT1 AIR3 AT2G05830 ABH1 ALD1 UGT73B5 UGT73B4 AHB1 PIP2;8 APC10 AT2G23120 AtWRKY15 PYL2 HDA13 AT2G28780 ATGSTU1 UGT87A2 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32020 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G34810 SGD9 AT2G35290 AT2G35730 PIP2;2 ATEXP3 ATWRKY33 AtERF48 AT2G41380 AT2G42690 ATWRKY23 GASA5 AtRLP30 AT3G05500 RCI2A AT3G06750 AT3G07310 ATPUB9 AIR12 AT3G08030 AHB2 AT3G11110 CYC2 AT3G12900 BRL3 AT3G13510 AT3G13950 IAA26 ATRALF23 RACK1C ATPUB29 PUB25 AtOCT4 AT3G22160 GABA-T RDM1 AOC3 AtMAD2 AT3G26450 PMZ ATSMC2 AT3G47480 AtMYB45 emb1796 MYB77 AtDWF4 GATL2 BCS1 LTI30 AtFBA8 AT3G54150 A11 AT3G55430 SIB1 AT3G57020 BRH1 AtTIR1 MARD1 UNE11 AtWRKY22 MEE49 AT4G01870 GLB1 ATSUS3 AT4G08790 CRF1 RHA1B BASS5 ELIP2 ATDI21 NRPD4 ATHB-2 5PTASE2 ATIRT1 AT4G22530 AT4G23670 ATEXPB3 AT4G29110 AT4G30020 BRS1 ATPRMT5 AT4G33070 LKR RSL2 ADC2 AT4G34760 RHA3B ATPLDDELTA ATMYB73 CYP81D8 ATCSP2 ATBRI1 PLS AT4G39670 AT5G03380 HD2C C2H2 ATNAS1 AtCHIL PYL5 ATPGIP1 ATPGIP2 ATS3 ATFLS1 anac081 AIL6 ATWRKY75 Rap2.6L LEP ATCHS AtCor6.6 TOZ ATGSTF12 AT5G22890 ATCPSF100 ATVSP1 AT5G25940 ATSTP13 AT5G27760 BGLU42 ARF8 GORK Encodes a putative amino acid transporter. ANAC092 RS5 DRB5 ATERF-9 CYP707A3 ATERF-5 HAT2 mtACP3 AtNSP5 COR78 ATPMEPCRF ATNAS2 AGR AT5G57785 ATMYB34 PDCB1 AT5G62210 ATMYB96 BT1 ANAC102 AT5G63940 ATCMPG2 ATWRKY51 AT5G65300 AT5G66650
GO:0071731
response to nitric oxide		BP4.347e-05ATMTK AT2G05830 AT3G12900 ATIRT1 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2
GO:0071281
cellular response to iron ion		BP4.672e-05ATMTK AT2G05830 AT3G12900 ATIRT1 CYP82C4 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2
GO:0009723
response to ethylene		BP5.432e-05GAI AtMYB51 EDF1 STZ ATMTK ALDH7B4 AT1G63720 AT1G64610 IDA ATMYBL2 ATMKK9 CML38 ATWRKY40 AT2G05830 UGT73B5 UGT73B4 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT3G12900 AOC3 PMZ MYB77 AT3G54150 AT4G01870 5PTASE2 ATIRT1 ADC2 ATMYB73 CYP81D8 PLS AT4G39670 ATNAS1 ATWRKY75 Rap2.6L AT5G25940 AT5G27760 BGLU42 Encodes a putative amino acid transporter. ANAC092 ATERF-9 ATERF-5 ATNAS2 AGR AT5G65300
GO:0071704
organic substance metabolic process		BP6.223e-05AT1G01100 AT1G01210 ANAC003 ATGPAT2 IMPA-6 ATCSLD5 AT1G03230 AT1G03730 AtTPX2 TPR3 AT1G04480 LIP2 UGT1 UGT74E2 encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols GLX2-4 AT1G06380 HPD encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase AT1G06720 AT1G07070 ATSTN1 AT1G07280 ATSMO1 AT1G07930 ADT6 ATSYP111 CJD1 AT1G08940 AMI1 GLP5 AT1G09590 ATATP-PRT2 AT1G09800 LRR GRP23 scpl31 AT1G11240 NRPB10 ATGLX1 RPS5 AT1G12244 AT1G12650 AT1G13160 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. AT1G14060 DECOY NUP155 GAI AT1G14960 AT1G15250 ATPWP2 AT1G15480 ATECB2 RAD23A AT1G16220 GAPCP-2 ATSRG1 ATGSTU24 HLL AtMYB51 AT1G18850 ATWRKY61 ATICS2 ATDHAR1 ARF5 AtCOR47 AT1G21010 AT1G21340 ATFBP7 RAP2.4 AT1G22440 AT1G23000 AT1G23100 AT1G23280 RPL27A AT1G23410 AT1G25260 EDF1 AT1G26470 AT1G26880 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. AT1G27400 STZ AT1G28390 AT1G28395 AT1G28530 AT1G28580 ARAB-1 ATNUDT15 CARB NRPA2 AT1G29965 ATNUDX25 AT1G31660 AT1G32190 PRS2 AT1G33120 AT1G33260 ATNUP160 ATNR2 AT1G41880 AT1G42440 RAP2.6 RAP2.1 5PTASE11 DYW1 AT1G48570 RACK1B ATNUC-L1 PAB8 PUB26 ATMTK AT1G50400 POLGAMMA2 AT1G50920 AGC2-3 PLT2 ATSPP1 IAR3 AT1G52370 AT1G52930 GRI DRP5A AtDJ1B AT1G53530 AT1G53560 GLL22 ALDH7B4 ATLOX1 EMB1860 AT1G56045 NOP56 ATNAS4 AT1G56500 AT1G57660 AT1G57860 ATATP-PRT1 AT1G58170 XW6 AT1G59860 ARR3 AT1G59970 EMB3108 AT1G60080 AAC42 AT1G61370 TIM13 ARP2 FMO AT1G62780 AtLPLAT2 AT1G63660 IMP4 AT1G63810 AT1G64610 AT1G64760 AT1G65510 LSM8 AT1G66250 IDA ACR4 AT1G69250 ATELF5A-3 RPL34 AT1G69790 AMY3 ATMYBL2 AtdNK ATCAD1 AT1G72900 APC13 ATMKK9 AT1G73655 Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. ENO1 CYP98A9 NRP1 ATMYB31 AT1G75670 AHL29 CDKB2;1 CML38 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATGSTU20 RIP4 AtBAS AT1G79150 PPR596 WIN1 AT1G80750 ATWRKY40 AtJ8 At17.1 ATPIN4 ATHB-17 AT2G01630 AT2G01900 AtPP2-B5 AtPP2-B6 ATGSTZ1 ATEXP15 AtSOT1 RGF3 AIR3 AT2G05830 PFD1 AT2G09990 ABH1 ALD1 CYP40 PRORP2 EMB2762 STY8 APC10 SDH1-2 ATDGK3 ATPRMT1A AT2G19750 AT2G20210 AT2G20450 EDA27 AT2G20940 AT2G21510 AT2G21580 ATGRP7 SCPL12 MEL4 AtMYB70 AtWRKY15 ATMES1 AT2G24580 AtENODL14 AT2G25210 AT2G25355 encodes a protein whose sequence is similar to ACC oxidase PYL2 AT2G26190 HO2 CYCB1;4 NPC2 HDA13 CKS2 AT2G28450 AT2G28600 ATSMO2 ATGSTU1 ATRPAC14 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G31610 AT2G31790 AT2G32060 AT2G32220 ZFN2 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G33840 WDR55 AT2G34357 CYP710A2 AT2G34810 AT2G35040 SGD9 AT2G35430 AT2G36170 BE3 RPL24A AT2G37020 AT2G37190 AT2G37600 AKR4C8 ATDET2 ATWRKY33 ATMVD1 HTA8 AT2G39390 ATMTP11 AT2G40010 AT2G40205 AtERF48 AT2G40360 AT2G40430 AT2G40700 CYP98A3 BHLH100 AT-HSFB3 AT2G42690 AT2G42710 AT2G42720 RPL16A ATLEUD1 AT2G43420 AT2G43500 EMB2777 AT2G44860 cycp3;1 GCP1 DHDPS2 AT2G45710 AT2G45730 AT2G46850 ATWRKY23 EDA13 RKF3 AT3G01810 AT3G01820 AT3G01860 AT3G02190 AT3G02220 AT3G02640 AT3G03130 ATMS2 AT3G03920 AT3G03990 AT3G04010 anac047 RPSAb ATNEK2 AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 RCI2A AT3G06040 AT3G06320 AT3G06530 AT3G06680 AT3G06700 TRX MORF3 ATPRMT4B NSN1 AT3G07320 ATPUB9 AIR12 ATYLMG1-1 AT3G07720 AT3G07750 AT3G08030 AT3G08520 ATSIK LAC7 TAC1 AT3G09680 AT3G09700 AT3G09720 PIP5K9 OMR1 AT3G10090 AHB2 AT3G10530 AT3G10610 ATMES17 AT3G11210 CYC2 AT3G11580 ATKRS-1 scpl16 SCPL15 AT3G12340 emb2742 NANA DECR AtMYB10 AT3G13040 AT3G13230 BRL3 AT3G13510 CYP90D1 AT3G13882 AT3G13940 AT3G13950 LSM1B AT3G14190 SRF7 AT3G14890 ATPPC3 AtDJ1A RIP1 MEE35 AT3G15460 ADS3 AT3G15940 AT3G16080 JAL30 IAA26 AT3G16565 AT3G16780 APUM24 RPL3P RACK1C AT3G18600 ATPUB29 RLK902 AT3G18760 ATPREP1 PUB25 AT3G19440 ATCAD4 AT3G19500 TOM40 AtOCT4 PLT1 ATNADK-1 AT3G21300 AT3G21330 AT3G21540 AT3G22160 GABA-T AT3G22230 ATRPABC24.3 AT3G22660 RDM1 AT3G22750 AT-HSFA6B AT3G23390 AT3G23620 ATIPT7 AtGRP4 AT3G23930 AT3G23940 ATGR1 ATMSH1 ICK3 AT3G25660 AOC3 CRF11 AT3G25940 AtMAD2 AtTRM11 AT3G26450 ATPHB4 CARA AT3G27950 BR6OX2 AT3G43980 AT3G44010 ATNIT1 AtNIT3 AT3G44590 ATHD2A AtXTH31 AT3G45020 RPS15AD AT3G46210 emb2474 AT3G47000 ATSMC2 AT3G47480 BIR6 CEP3 AT3G48900 AtMYB45 AAE3 AT3G49080 emb1796 AT3G49640 AT3G49810 MYB77 CYCD3;3 ICK2 AT3G50650 AtDWF4 AT3G50685 UGT72E1 BEH1 GATL2 AT3G50800 AT3G50850 GATA18 BCS1 AT3G51280 SSL5 IMK2 ATEBP1 AT3G51950 FMT ATOFP18 ATELP AtFBA8 AT3G53220 AtCDC48B ATPAL2 AT3G53890 AT3G53940 FLN1 ATCDT1B ATPURM A11 AT3G55170 RPL23A2 OVA1 AT3G55430 AT3G55750 ROC2 IMK3 SIB1 EDA7 AT3G57000 AT3G57010 AT3G57020 AT3G57940 AT3G58610 AT3G58640 AT3G58660 AT3G59540 AT3G59670 AT3G59710 BGLU16 AT3G60245 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. CER7 AT3G60770 DHDPS ARS27A AT3G61610 AT3G61930 UBQ5 AT3G62280 AtTIR1 PLA GAE3 EMB3127 AtWRKY22 MEE49 AtMYB55 AT4G01870 GLB1 ATSUS3 DES-1-LIKE AT4G04940 YAO ACS11 ATNDK1 ATGIP1 RH39 ATDET1 AT4G10450 AtGH9C3 MTSSB AT4G11100 CRF1 RHA1B BASS5 AT4G12600 AT4G12750 AT4G12830 CYP83A1 ATGRP2 ATWEX KINESIN-12A ELIP2 CYP702A2 AtCLA1 AT4G15640 AT4G15770 NRPD4 AT4G16141 NRPB9B AT4G16770 ATHB-2 HAT1 5PTASE2 AT4G18440 AT4G18593 CYP707A1 AK-HSDH MORF1 AAH smB ATK1 AT4G22290 AT4G22530 AT4G23670 AT4G23760 ATTRE1 EMB140 AT4G24350 PGI ATFKBP53 AtSAP10 ATFIB2 AT4G25730 AT4G25740 ATXTH14 AT4G25890 ACS7 AT4G26230 AT4G26600 AT4G26860 AT4G26870 AT4G27640 BGLU10 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G28840 PRF4 AT4G29390 AT4G29410 ATPRMT11 ACA10 AT4G30020 CDEF1 AT4G30180 RUXF BRS1 AT4G30800 scpl29 AT4G30840 ATPRMT5 AT4G31790 AtENODL15 AtSHMT3 ATSDX1 AtAUR1 AT4G32920 AT4G33070 LKR AT4G33420 Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis AT4G33865 RSL2 AT4G34480 AT4G34555 ADC2 ARAC3 RHA3B MRPL11 ATPLDDELTA CSDP1 ROT3 AT4G36530 BEH2 BLH2 DEAR4 AtPLAIVA myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen ATMYB73 mtHsc70-1 STY46 AT4G38890 AT4G39280 ATBRI1 AT4G39670 ATIPS1 TAAC ATOFP1 AT5G02050 AT5G02450 AT5G02580 AT5G02610 GSTL1 HD2C AT5G03850 GYRB2 SIR ATNAS1 AT5G05180 AtCHIL AtENGase85A UGT76C2 ATEIF3G2 AT5G06360 AT5G06410 ATUBA2 ATPGIP2 AT5G07030 AT5G08180 AT5G08570 AT5G08600 PDE340 ATFLS1 anac081 AIL6 AT5G11240 AT5G11750 ATWRKY75 Rap2.6L AAC2 AT5G13830 LEP ATCHS CARAB-AK-LYS ATIMD1 HEMG2 AT5G14520 AT5G14580 AT5G14600 ATWRKY72 AT5G15510 AT5G15520 AT5G15550 AT5G15810 AT5G16140 VAT1 TOZ AT5G17160 ATGSTF12 AT5G17270 AT5G17670 AtMYB56 Cpn60alpha2 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase AT5G20160 AT5G20290 AL5 BGAL7 AT5G20950 AT5G21105 AT5G22100 AtNIT4 ATHD2 AT5G22890 IMS2 ATCPSF100 ATSOS3 PGL4 AT5G27700 AT5G27770 AT5G35910 BGLU42 ARF8 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G38200 ATBR6OX ANAC092 AT5G39850 AT5G40040 RS5 GPDHp NRPB12 DRB5 AT5G41190 ATS ATERF-9 CYP707A3 AT5G46160 AT5G46430 AT5G47210 ATERF-5 HAT2 mtACP3 AT5G47700 AT5G47930 GFA2 ATXTH20 AtNSP5 AT5G48240 AT5G48360 AT5G48590 AT5G48760 AT5G49900 AT5G50180 TIM8 AT5G51310 ATMAP65-3 ATPGMP AT5G51830 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. ATFBR1 ATPMEPCRF AT5G53850 AHL AT5G55140 AT5G55180 OLI2 ATNAS2 COX15 ANQ1 AT5G56670 AT5G56710 RID2 AT5G57570 AT5G57785 AtcPT4 BSK5 AT5G59240 AT5G59270 AT5G59850 AT5G60270 AT5G60670 ATMYB34 COBL5 PNM1 GR-RBP3 PDCB1 ANAC100 AT5G61880 AT5G62030 PRH75 AT5G62210 AT5G62300 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ATMYB96 AT5G62900 FOLB2 BT1 ANAC102 UVR8 AT5G63940 PSAN RPS28 AT5G64250 AT5G64420 ATCMPG2 AT5G64670 ATWRKY51 AT5G65300 BAM1 AT5G65860 AT5G66080 AT5G66230 AT5G66540 AT5G66580 AT5G66860 IRX15-L ATEB1C AT5G67510 PSBL
GO:0034470
ncRNA processing		BP7.135e-05LIP2 ATPWP2 AT1G31660 ATNUC-L1 AT1G52930 IMP4 ABH1 PRORP2 EMB2762 EDA27 AT2G40360 AT2G44860 EDA13 AT3G03920 RPSAb AT3G04920 TRX AT3G07750 emb2742 AT3G13230 TOM40 ATIPT7 AtGRP4 AtTRM11 ATHD2A AT3G49640 AT3G53890 FLN1 ROC2 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. AT4G04940 RH39 AT4G12600 ATGRP2 ATFIB2 AT4G25730 AT4G26600 AT4G38890 AT5G08600 AT5G11240 AT5G14600 AT5G15550 AT5G15810 TOZ AT5G20160 AT5G20290 AT5G27700 AT5G41190 ATFBR1 OLI2 RID2 AT5G59240 AT5G66540
GO:0006364
rRNA processing		BP7.398e-05LIP2 ATPWP2 AT1G31660 ATNUC-L1 AT1G52930 IMP4 EMB2762 EDA27 AT2G40360 AT2G44860 EDA13 AT3G03920 RPSAb AT3G04920 TRX AT3G07750 emb2742 AT3G13230 TOM40 AtGRP4 ATHD2A AT3G53890 FLN1 ROC2 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. AT4G04940 RH39 AT4G12600 ATGRP2 ATFIB2 AT4G25730 AT4G26600 AT5G08600 AT5G11240 AT5G15550 TOZ AT5G20160 AT5G20290 AT5G27700 AT5G41190 ATFBR1 OLI2 RID2 AT5G59240 AT5G66540
GO:0080167
response to karrikin		BP8.150e-05UGT74E2 AT1G25275 AT1G80530 AT2G16660 AT2G39980 ATCAD4 AtFBA8 ATPAL2 A11 AT4G24110 LKR ADC2 CYP81D8 AtCHIL ATFLS1 ZIFL1 AT5G18470 DGR2 COR27 AT5G57785 AT5G62210
GO:0016072
rRNA metabolic process		BP8.491e-05LIP2 ATPWP2 AT1G31660 ATNUC-L1 AT1G52930 IMP4 EMB2762 EDA27 AT2G40360 AT2G44860 EDA13 AT3G03920 RPSAb AT3G04920 TRX AT3G07750 emb2742 AT3G13230 TOM40 AtGRP4 ATHD2A AT3G53890 FLN1 ROC2 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. AT4G04940 RH39 AT4G12600 ATGRP2 ATFIB2 AT4G25730 AT4G26600 AT5G08600 AT5G11240 AT5G15550 TOZ AT5G20160 AT5G20290 AT5G27700 AT5G41190 ATFBR1 OLI2 RID2 AT5G59240 AT5G66540
GO:1901564
organonitrogen compound metabolic proces...		BP8.906e-05LIP2 UGT1 UGT74E2 GLX2-4 HPD ATSMO1 ADT6 AMI1 ATATP-PRT2 ATGLX1 GAPC-2 ATPWP2 AtMYB51 AT1G23280 AT1G28395 AT1G28530 ATNUDT15 CARB AT1G31660 PRS2 AT1G48570 RACK1B ATNUC-L1 PAB8 ATMTK AT1G52930 ALDH7B4 EMB1860 NOP56 ATNAS4 ATATP-PRT1 EMB3108 AT1G62780 AT1G63660 AT1G63810 ACR4 ATCAD1 ATMKK9 CYP98A9 ATGSTU20 AT1G79150 PPR596 WIN1 AT2G05830 ABH1 ALD1 EMB2762 SDH1-2 AT2G24580 HO2 ATSMO2 ATGSTU1 AT2G33840 WDR55 AT2G35040 AT2G37020 AKR4C8 ATWRKY33 AT2G42690 ATLEUD1 DHDPS2 AT2G45730 ATMS2 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G06530 ATPRMT4B ATYLMG1-1 AT3G08030 AT3G09720 PIP5K9 OMR1 AT3G10530 AT3G10610 ATMES17 ATKRS-1 emb2742 AT3G13040 AtDJ1A AT3G15460 ADS3 AT3G16565 AT3G16780 RACK1C AT3G18600 TOM40 AtOCT4 ATNADK-1 GABA-T ATIPT7 AT3G23940 ATGR1 AtTRM11 AT3G26450 CARA ATNIT1 ATHD2A AAE3 AT3G49080 emb1796 UGT72E1 SSL5 ATEBP1 AtFBA8 ATPAL2 AT3G53940 ATPURM OVA1 AT3G57010 AT3G57020 AT3G57940 AT3G58610 AT3G58660 DHDPS EMB3127 GLB1 DES-1-LIKE AT4G04940 YAO ACS11 ATNDK1 CRF1 AT4G12600 CYP83A1 ELIP2 CYP702A2 AtCLA1 AT4G18440 AK-HSDH AAH AT4G22530 AT4G23670 AT4G24350 ATFIB2 ACS7 AT4G26870 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29410 ACA10 ATPRMT5 AT4G31790 AtSHMT3 ATSDX1 LKR AT4G33420 ADC2 ARAC3 AT4G39280 ATIPS1 AT5G02050 SIR ATNAS1 UGT76C2 PDE340 AT5G11240 Rap2.6L CARAB-AK-LYS ATIMD1 HEMG2 AT5G16140 VAT1 Cpn60alpha2 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase AT5G21105 ATHD2 IMS2 ATCPSF100 PGL4 AT5G38200 AT5G46160 AT5G47210 AtNSP5 AT5G49900 ATPGMP AT5G53850 ATNAS2 COX15 ATMYB34 PNM1 GR-RBP3 PDCB1 AT5G61880 FOLB2 PSAN AT5G64250 AT5G64670
GO:0015931
nucleobase-containing compound transport		BP9.997e-05AT1G06720 AT1G13160 ATPWP2 ATNUP160 AAP3 AT1G79150 ATGRP7 AT2G34357 AT2G40430 AT2G40700 RPSAb AT3G10090 APUM24 AT3G21540 EDA7 YAO CRF1 AAC3 ATPRMT5 AT5G03850 AtmtOM64 AAC2 AT5G15810 TOZ AT5G17270 RPS28
GO:1901360
organic cyclic compound metabolic proces...		BP1.042e-04AT1G01210 ANAC003 IMPA-6 ATCSLD5 AtTPX2 LIP2 UGT1 UGT74E2 HPD encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase ATSTN1 ATSMO1 ADT6 ATSYP111 AMI1 ATATP-PRT2 AT1G09800 GRP23 AT1G11240 NRPB10 AT1G12244 AT1G12650 EDF4 GAPC-2 Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress. NUP155 AT1G14960 ATPWP2 AT1G15480 ATECB2 RAD23A HLL AtMYB51 AT1G18850 ATWRKY61 ARF5 AT1G21340 RAP2.4 AT1G22440 AT1G23280 AT1G23410 AT1G25260 EDF1 AT1G26470 AT1G26880 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. AT1G27400 STZ AT1G28395 AT1G28530 ATNUDT15 CARB NRPA2 ATNUDX25 AT1G31660 PRS2 AT1G42440 RAP2.6 RAP2.1 DYW1 AT1G48570 RACK1B ATNUC-L1 PAB8 AT1G50400 POLGAMMA2 AT1G50920 PLT2 AT1G52930 GRI DRP5A ALDH7B4 EMB1860 NOP56 ATNAS4 AT1G56500 ATATP-PRT1 AT1G58170 ARR3 EMB3108 AT1G60080 AAC42 TIM13 ARP2 AT1G62780 AT1G63660 IMP4 AT1G63810 AT1G64610 LSM8 AT1G69250 ATMYBL2 AtdNK ATCAD1 ATMKK9 ATMYB31 AT1G75670 CDKB2;1 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATGSTU20 RIP4 AtBAS AT1G79150 PPR596 AT1G80750 ATWRKY40 ATHB-17 AT2G01630 ATGSTZ1 AtSOT1 AT2G05830 ABH1 PRORP2 EMB2762 APC10 SDH1-2 AT2G20450 EDA27 AT2G21580 ATGRP7 AtMYB70 AtWRKY15 ATMES1 AT2G24580 HO2 HDA13 CKS2 AT2G28450 AT2G28600 ATSMO2 ATGSTU1 ATRPAC14 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32060 AT2G32220 ZFN2 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G33840 WDR55 CYP710A2 AT2G35040 SGD9 AT2G35430 AT2G36170 RPL24A AT2G37020 AT2G37190 AKR4C8 ATDET2 ATWRKY33 ATMVD1 HTA8 AT2G40010 AtERF48 AT2G40360 AT2G40700 CYP98A3 BHLH100 AT-HSFB3 AT2G42710 AT2G42720 RPL16A ATLEUD1 AT2G43420 AT2G43500 AT2G44860 GCP1 AT2G45710 AT2G45730 ATWRKY23 EDA13 AT3G01820 AT3G02220 AT3G03130 AT3G03920 AT3G03990 anac047 RPSAb AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06040 AT3G06530 AT3G06700 TRX MORF3 ATPRMT4B NSN1 ATYLMG1-1 AT3G07720 AT3G07750 AT3G08030 LAC7 TAC1 AT3G09720 AT3G10530 AT3G10610 ATMES17 CYC2 AT3G11580 ATKRS-1 AT3G12340 emb2742 AtMYB10 AT3G13040 AT3G13230 AT3G13510 CYP90D1 AT3G13940 AT3G13950 LSM1B AT3G14190 AT3G14890 AtDJ1A RIP1 MEE35 AT3G15460 ADS3 AT3G16080 IAA26 AT3G16565 AT3G16780 APUM24 RACK1C AT3G18600 AT3G19440 ATCAD4 AT3G19500 TOM40 AtOCT4 PLT1 ATNADK-1 AT3G21300 AT3G21330 AT3G21540 ATRPABC24.3 AT3G22660 RDM1 AT-HSFA6B AT3G23620 ATIPT7 AtGRP4 AT3G23940 ATMSH1 ICK3 CRF11 AT3G25940 AtMAD2 AtTRM11 ATPHB4 CARA BR6OX2 ATNIT1 AT3G44590 ATHD2A AT3G46210 emb2474 ATSMC2 AT3G47480 BIR6 AT3G48900 AtMYB45 AAE3 AT3G49080 emb1796 AT3G49640 MYB77 CYCD3;3 ICK2 AT3G50650 AtDWF4 UGT72E1 BEH1 GATA18 BCS1 AT3G51280 ATEBP1 AT3G51950 ATOFP18 AtFBA8 ATPAL2 AT3G53890 AT3G53940 FLN1 ATCDT1B ATPURM OVA1 ROC2 SIB1 AT3G57010 AT3G57940 AT3G58610 AT3G58660 AT3G59540 AT3G59670 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. CER7 AT3G60770 ARS27A GAE3 EMB3127 AtWRKY22 AtMYB55 GLB1 AT4G04940 YAO ATNDK1 RH39 ATDET1 AT4G10450 AT4G11100 CRF1 AT4G12600 AT4G12750 AT4G12830 CYP83A1 ATGRP2 ATWEX KINESIN-12A ELIP2 CYP702A2 AtCLA1 AT4G15640 AT4G15770 NRPD4 AT4G16141 NRPB9B ATHB-2 HAT1 AT4G18440 AK-HSDH MORF1 AAH smB ATK1 AT4G22530 EMB140 AT4G24350 ATFKBP53 ATFIB2 AT4G25730 AT4G26600 AT4G26870 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G28840 AT4G29390 AT4G29410 ACA10 AT4G30180 RUXF AT4G30800 AT4G30840 ATPRMT5 AT4G31790 AtSHMT3 ATSDX1 AtAUR1 AT4G33420 RSL2 ARAC3 MRPL11 CSDP1 ROT3 BEH2 BLH2 DEAR4 myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen ATMYB73 mtHsc70-1 AT4G38890 AT4G39280 AT4G39670 ATOFP1 AT5G02050 HD2C GYRB2 SIR ATNAS1 AT5G05180 AT5G06360 ATUBA2 ATPGIP2 AT5G08180 AT5G08600 PDE340 anac081 AIL6 AT5G11240 ATWRKY75 Rap2.6L AT5G13830 LEP ATCHS HEMG2 AT5G14580 AT5G14600 ATWRKY72 AT5G15510 AT5G15520 AT5G15550 AT5G15810 AT5G16140 TOZ AT5G17270 AtMYB56 Cpn60alpha2 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase AT5G20160 AT5G20290 AL5 AT5G21105 AT5G22100 ATHD2 AT5G22890 IMS2 ATCPSF100 PGL4 AT5G27700 AT5G27770 AT5G35910 ARF8 ATBR6OX ANAC092 NRPB12 DRB5 AT5G41190 ATS ATERF-9 AT5G46160 AT5G47210 ATERF-5 HAT2 mtACP3 AT5G48240 AT5G48360 AT5G48760 TIM8 ATMAP65-3 ATPGMP encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. ATFBR1 AT5G55140 OLI2 ATNAS2 COX15 ANQ1 AT5G56670 RID2 AT5G59240 AT5G59850 ATMYB34 COBL5 PNM1 GR-RBP3 ANAC100 AT5G61880 PRH75 ATMYB96 FOLB2 BT1 ANAC102 PSAN AT5G64250 AT5G64420 AT5G64670 ATWRKY51 AT5G65860 AT5G66540 PSBL
GO:0001101
response to acid chemical		BP1.217e-04ATCSLD5 UGT1 UGT74E2 MT1C GLP5 AT1G11210 GAI ATSRG1 AtMYB51 AT1G18980 ATDHAR1 AtCOR47 ERD10 RAP2.4 AT1G22440 STZ RAP2.6 RAP2.1 5PTASE11 JAZ4 RACK1B GRI ALDH7B4 ATLOX1 AT1G63720 AT1G64610 ATHVA22C ATMYBL2 AT1G72900 ATMYB31 CML38 ATWRKY40 AtSOT1 ABH1 ALD1 AHB1 PIP2;8 ATGRP7 AT2G23120 PYL2 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G32020 AT2G34810 PIP2;2 ATEXP3 AKR4C8 ATWRKY33 AtERF48 BHLH100 ABCC4 GASA5 AtRLP30 RCI2A AT3G06750 AT3G07310 ATPUB9 AT3G08030 LTP6 LAC7 TAC1 AT3G13950 ATPPC3 RACK1C AtOCT4 AT3G22160 ATRH9 AtGRP4 AOC3 PMZ AT3G44380 AT3G47480 AtMYB45 AAE3 emb1796 MYB77 AtDWF4 UGT72E1 GATL2 LTI30 AT3G54150 SIB1 ATMTP3 MARD1 AT4G01870 ATSUS3 CRF1 BASS5 ATGRP2 ATDI21 5PTASE2 ATIRT1 AT4G30660 AT4G33070 AT4G33420 ADC2 ATPLDDELTA CSDP1 ATMYB73 ATCSP2 AT4G39670 ATIREG2 HD2C PYL5 ATPGIP1 ATPGIP2 ATS3 ATRH25 anac081 ATWRKY75 Rap2.6L ZIFL1 LEP ATCHS AtCor6.6 AT5G22890 ATVSP1 ATSTP13 GORK ANAC092 RS5 CYP707A3 COR78 ATNRT2.4 ATMYB34 PDCB1 ATMYB96 BT1 ATWRKY51 AT5G65300
GO:1990267
response to transition metal nanoparticl...		BP1.355e-04MT1C ATWRKY61 ATDHAR1 ATMTK MLP328 AT2G05830 ATGRP7 ATMTP11 AT3G07720 TAC1 AT3G12900 ATCOX17 ATFER3 ATMTP3 ATIRT1 AtSAP10 CYP82C4 ATNAS1 BGLU42 Encodes a putative amino acid transporter. ATNAS2
GO:0006807
nitrogen compound metabolic process		BP1.411e-04AT1G01210 ANAC003 IMPA-6 ATCSLD5 AtTPX2 LIP2 UGT1 UGT74E2 GLX2-4 HPD ATSTN1 ATSMO1 ADT6 AMI1 ATATP-PRT2 AT1G09800 GRP23 AT1G11240 NRPB10 ATGLX1 AT1G12244 AT1G12650 EDF4 GAPC-2 NUP155 ATPWP2 AT1G15480 ATECB2 RAD23A HLL AtMYB51 AT1G18850 ATWRKY61 ARF5 AT1G21340 RAP2.4 AT1G23280 AT1G23410 AT1G25260 EDF1 AT1G26470 AT1G26880 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. AT1G27400 STZ AT1G28395 AT1G28530 ATNUDT15 CARB NRPA2 ATNUDX25 AT1G31660 PRS2 ATNR2 AT1G42440 RAP2.6 RAP2.1 DYW1 AT1G48570 RACK1B ATNUC-L1 PAB8 ATMTK AT1G50400 POLGAMMA2 AT1G50920 PLT2 AT1G52930 DRP5A ALDH7B4 EMB1860 NOP56 ATNAS4 AT1G56500 ATATP-PRT1 ARR3 EMB3108 AT1G60080 AAC42 TIM13 ARP2 AT1G62780 AT1G63660 IMP4 AT1G63810 LSM8 ACR4 AT1G69250 ATMYBL2 AtdNK ATCAD1 ATMKK9 CYP98A9 ATMYB31 AT1G75670 CDKB2;1 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. ATGSTU20 RIP4 AT1G79150 PPR596 WIN1 AT1G80750 ATWRKY40 ATHB-17 AT2G01630 AT2G05830 ABH1 ALD1 PRORP2 EMB2762 APC10 SDH1-2 AT2G20450 EDA27 AT2G21580 ATGRP7 AtMYB70 AtWRKY15 AT2G24580 HO2 HDA13 CKS2 AT2G28450 AT2G28600 ATSMO2 ATGSTU1 ATRPAC14 AT2G32060 AT2G32220 ZFN2 encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. AT2G33840 WDR55 AT2G35040 SGD9 AT2G35430 AT2G36170 RPL24A AT2G37020 AT2G37190 AKR4C8 ATWRKY33 HTA8 AT2G40010 AtERF48 AT2G40360 AT2G40700 BHLH100 AT-HSFB3 AT2G42690 AT2G42710 AT2G42720 RPL16A ATLEUD1 AT2G43500 AT2G44860 GCP1 DHDPS2 AT2G45710 AT2G45730 ATWRKY23 EDA13 AT3G01820 AT3G02220 AT3G03130 ATMS2 AT3G03920 anac047 RPSAb AT3G04920 SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein AT3G05560 AT3G06040 AT3G06530 AT3G06700 TRX MORF3 ATPRMT4B NSN1 ATYLMG1-1 AT3G07750 AT3G08030 TAC1 AT3G09720 PIP5K9 OMR1 AT3G10530 AT3G10610 ATMES17 CYC2 AT3G11580 ATKRS-1 AT3G12340 emb2742 AtMYB10 AT3G13040 AT3G13230 AT3G13510 AT3G13940 LSM1B AT3G14190 AT3G14890 AtDJ1A RIP1 MEE35 AT3G15460 ADS3 AT3G16080 IAA26 AT3G16565 AT3G16780 APUM24 RACK1C AT3G18600 AT3G19440 AT3G19500 TOM40 AtOCT4 PLT1 ATNADK-1 AT3G21300 AT3G21330 AT3G21540 GABA-T ATRPABC24.3 AT3G22660 RDM1 AT-HSFA6B AT3G23620 ATIPT7 AtGRP4 AT3G23940 ATGR1 ATMSH1 ICK3 CRF11 AT3G25940 AtMAD2 AtTRM11 AT3G26450 ATPHB4 CARA ATNIT1 AtNIT3 AT3G44590 ATHD2A AT3G46210 emb2474 ATSMC2 BIR6 AT3G48900 AtMYB45 AAE3 AT3G49080 emb1796 AT3G49640 MYB77 CYCD3;3 ICK2 AT3G50650 UGT72E1 BEH1 GATA18 AT3G51280 SSL5 ATEBP1 AT3G51950 ATOFP18 AtFBA8 ATPAL2 AT3G53890 AT3G53940 FLN1 ATCDT1B ATPURM OVA1 ROC2 AT3G57010 AT3G57020 AT3G57940 AT3G58610 AT3G58660 AT3G59540 AT3G59670 EDA14 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. CER7 AT3G60770 DHDPS ARS27A GAE3 EMB3127 AtWRKY22 AtMYB55 GLB1 DES-1-LIKE AT4G04940 YAO ACS11 AT4G08790 ATNDK1 RH39 ATDET1 AT4G10450 AT4G11100 CRF1 AT4G12600 AT4G12750 AT4G12830 CYP83A1 ATGRP2 ATWEX KINESIN-12A ELIP2 CYP702A2 AtCLA1 AT4G15640 AT4G15770 NRPD4 AT4G16141 NRPB9B ATHB-2 HAT1 AT4G18440 AK-HSDH MORF1 AAH smB ATK1 AT4G22530 AT4G23670 EMB140 AT4G24350 ATFKBP53 ATFIB2 AT4G25730 ACS7 AT4G26600 AT4G26870 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G28840 AT4G29390 AT4G29410 ACA10 AT4G30180 RUXF AT4G30800 AT4G30840 ATPRMT5 AT4G31790 AtSHMT3 ATSDX1 AtAUR1 LKR AT4G33420 RSL2 ADC2 ARAC3 MRPL11 CSDP1 BEH2 BLH2 DEAR4 myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen ATMYB73 mtHsc70-1 AT4G38890 AT4G39280 ATIPS1 ATOFP1 AT5G02050 HD2C GYRB2 SIR ATNAS1 AT5G05180 UGT76C2 AT5G06360 ATUBA2 ATPGIP2 AT5G08180 AT5G08600 PDE340 anac081 AIL6 AT5G11240 ATWRKY75 Rap2.6L AT5G13830 LEP CARAB-AK-LYS ATIMD1 HEMG2 AT5G14580 AT5G14600 ATWRKY72 AT5G15510 AT5G15520 AT5G15550 AT5G15810 AT5G16140 VAT1 TOZ AT5G17270 AtMYB56 Cpn60alpha2 similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase AT5G20160 AT5G20290 AL5 AT5G21105 AT5G22100 AtNIT4 ATHD2 AT5G22890 IMS2 ATCPSF100 PGL4 AT5G27700 AT5G27770 AT5G35910 ARF8 AT5G38200 ANAC092 NRPB12 DRB5 AT5G41190 ATS ATERF-9 AT5G46160 AT5G47210 ATERF-5 HAT2 mtACP3 AtNSP5 AT5G48240 AT5G48360 AT5G48760 AT5G49900 TIM8 ATMAP65-3 ATPGMP encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. ATFBR1 AT5G53850 AT5G55140 OLI2 ATNAS2 COX15 ANQ1 AT5G56670 RID2 AT5G59240 AT5G59850 ATMYB34 PNM1 GR-RBP3 PDCB1 ANAC100 AT5G61880 PRH75 ATMYB96 FOLB2 BT1 ANAC102 PSAN AT5G64250 AT5G64420 AT5G64670 ATWRKY51 AT5G65860 AT5G66540 PSBL
GO:0051649
establishment of localization in cell		BP1.568e-04AT1G02370 IMPA-6 TPR3 AT1G06720 AT1G07030 AT1G07840 ATSYP111 AT1G08940 GLP5 LRR AT1G11240 AT1G13160 EDF4 AT1G14060 NUP155 AT1G15420 ATPWP2 AT1G15480 AtMYB51 AT1G18850 AT1G26470 TOM20-2 ATNUP160 EMB1860 AT1G56500 AT1G60080 TIM13 AT1G62780 AT1G63660 TOM7-2 AT1G64610 LSM8 IDA AT1G69250 AT1G72900 AT1G75670 AAP3 AT1G79150 PPR596 ATWRKY40 AtSOT1 ATDGK3 AT2G18900 AT2G19385 ATGRP7 AtTic55 AT2G25355 AT2G28450 Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. AT2G34357 ATTIM44-2 AT2G37400 AT2G37890 ATWRKY33 AT2G39725 AT2G40430 AT2G40700 AT2G45730 AT3G01860 AT3G02190 AT3G03920 RPSAb AtRLP30 TRX AT3G07750 AT3G07860 AT3G08943 AT3G10090 AT3G12340 AT3G12390 AT3G12860 BRL3 AT3G13950 ATCOX17 APUM24 TOM40 AT3G21540 AT3G22160 ATRPABC24.3 AT3G22660 AOC3 AtTRM11 PMZ AT3G46210 emb2474 AT3G47480 ATEBP1 AT3G52170 ATELP AT3G53940 EDA7 AT3G57000 AT3G57940 Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. MEE49 AT4G04940 YAO CRF1 AT4G15770 AT4G26600 AT4G27640 AAC3 ATPRMT5 ADC2 MRPL11 AT4G36680 AT4G39670 AT5G03850 ATEIF3G2 ATPGIP1 ATPGIP2 ATRH25 AtmtOM64 AAC2 AT5G14520 AT5G14580 AT5G15550 AT5G15750 AT5G15810 TOZ AT5G17270 AT5G17670 AT5G27395 AT5G38720 AT5G38890 AT5G41190 ATTOM22-V TIM8 ATPMEPCRF AT5G59240 ATEXO70H7 GR-RBP3 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. RPS28 AT5G66540