GOID	TERM	ONTOLOGY	pValue	Genes
GO:0001510	RNA methylation	BP	1.24577645387274e-23	AT1G18850//AT1G25260//RPL10B//RACK1B//AT1G52930//G-H2AX//TIM13//IMP4//AT2G20450//EDA27//HDA13//AT2G32060//AT2G32220//HTA8//RPL16A//AT2G45710//AT3G06530//AT3G07750//AT3G10610//AT3G15460//AT3G16080//RACK1C//ATPHB4//AT3G28900//ATHD2A//emb2474//AT3G47370//ROC2//AT3G58700//AT4G10450//AT4G12600//AT4G15640//AT4G15770//AT4G30800//AT5G02050//HD2C//AT5G08180//AT5G15520//AT5G20160//ATPHB3//TIM8//AT5G59850
GO:0043414	macromolecule methylation	BP	1.01306101966957e-19	ATPCNA1//AT1G18850//AT1G25260//RPL10B//RACK1B//AT1G52930//G-H2AX//TIM13//IMP4//ATPRMT1A//AT2G20450//EDA27//HDA13//ATPCNA2//AT2G32060//AT2G32220//HTA8//AT2G39795//RPL16A//AT2G45710//AT3G06530//AT3G07750//AT3G10610//AT3G15460//AT3G16080//RACK1C//ATPHB4//AT3G28900//ATHD2A//emb2474//AT3G47370//ROC2//AT3G58700//AT4G10450//AT4G12600//AT4G15640//AT4G15770//RRP41L//ATPRMT11//AT4G30800//AT4G31810//AT5G02050//HD2C//AT5G08180//AT5G15520//AT5G20160//ATPHB3//POLA3//TIM8//AT5G59850//GR-RBP3//AT5G67200
GO:0032259	methylation	BP	2.06038948496697e-19	ATPCNA1//AT1G18850//AT1G25260//RPL10B//RACK1B//AT1G52930//G-H2AX//TIM13//IMP4//ATPRMT1A//AT2G20450//EDA27//HDA13//ATPCNA2//AT2G32060//AT2G32220//HTA8//AT2G39795//RPL16A//AT2G45710//AT3G06530//AT3G07750//AT3G10610//AT3G15460//AT3G16080//RACK1C//ATPHB4//AT3G28900//ATHD2A//emb2474//AT3G47370//ROC2//AT3G58700//AT4G10450//AT4G12600//AT4G15640//AT4G15770//RRP41L//ATPRMT11//AT4G30800//AT4G31810//AT5G02050//HD2C//AT5G08180//AT5G15520//AT5G20160//ATPHB3//POLA3//TIM8//AT5G59850//GR-RBP3//AT5G67200
GO:0016144	S-glycoside biosynthetic process	BP	3.97575117649782e-17	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0019758	glycosinolate biosynthetic process	BP	3.97575117649782e-17	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0019761	glucosinolate biosynthetic process	BP	3.97575117649782e-17	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0009987	cellular process	BP	4.82366643052473e-17	ATERF10//AT1G04770//UGT1//ADS1//AT1G06830//AT1G07070//ATPCNA1//AT1G08220//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G18850//ATEXP11//AT1G21140//AT1G21440//AT1G23100//AT1G25260//AT1G26470//AT-EXP10//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G51380//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//AtLPLAT2//AT1G63720//IMP4//FMO//CYP735A2//AT1G68200//ATNUDT1//ATELF5A-3//AT-EXP1//ATH8//PG2//AT1G71870//CLE1//ATSOT18//ATBS1//NRP1//BLH11//AHL29//ATPDI6//GNR1//ATGSTU20//AT1G78990//CYCA2;4//ATPIN4//ATEXP15//AT2G04020//RGF3//ABCC13//AT2G09990//AHB1//PIP2;8//AT2G18410//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//CYP79B3//MEL4//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATEXP6//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//CLE4//CLE7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//AT2G36580//AtXTH32//AT2G37400//UMAMIT12//AT2G37470//AT2G37600//AT2G37690//HTA8//ATEXP4//AT2G39795//AT2G40590//AT2G41480//AT2G41890//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//ATCB5-C//AT2G46850//IAA20//AK3//ATGSTF11//GDH3//GLP8//AT3G06530//AtRABA5b//ATYLMG1-1//AT3G07750//HCC1//AT3G09680//AT3G10610//AT3G12370//AT3G12900//AT3G13230//BRL3//AT3G14390//AT3G15460//AT3G15680//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//BCAT4//AT3G20240//PLT1//AT3G23325//ATIPT7//ATSAHH2//AtGRP4//IDL1//CYP71B15//ATPHB4//AT3G28900//GLV3//AT3G43980//ATHD2A//AtXTH31//AT3G45930//AT3G46320//emb2474//DUT1//ATPHS2//AT3G47370//AT3G49320//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//PIP2;5//ATPDI1//ATPURM//UBC14//ROC2//AT3G57010//AT3G58700//ATMTP3//IPMI1//IAA30//ATGSTF13//UMAMIT29//APR//PSBQ//AT4G10450//AT4G11190//BASS5//AT4G12600//AtENODL19//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G17720//AT4G18440//ATIRT1//APR3//ACS7//AR192//RRP41L//ATEXPB3//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ARAC7//ADS1//ATPRMT11//AT4G29690//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CYP82C4//AT4G33905//CSDP1//AT4G36680//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//HD2C//TFL-1//SIR//ATNAS1//LAC12//CBB3//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AT5G10390//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AT5G15750//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//AtENODL13//HTA7//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G38030//AT5G38890//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//ATXTH20//KAT5//TIM8//AT5G53070//PTAC15//AT5G57170//AT5G57890//AT5G59240//AT5G59850//AT5G59970//AT5G60670//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G65920//AT5G66080//RALFL34//AT5G67200//RLK
GO:0009451	RNA modification	BP	1.94646976245792e-16	AT1G18850//AT1G25260//RPL10B//RACK1B//AT1G52930//G-H2AX//TIM13//IMP4//AT2G20450//EDA27//HDA13//AT2G32060//AT2G32220//HTA8//RPL16A//AT2G45710//AT3G06530//AT3G07750//AT3G10610//AT3G15460//AT3G16080//RACK1C//ATPHB4//AT3G28900//ATHD2A//emb2474//AT3G47370//ROC2//AT3G58700//AT4G10450//AT4G12600//AT4G15640//AT4G15770//AT4G30800//AT5G02050//HD2C//AT5G08180//AT5G15520//AT5G20160//ATPHB3//TIM8//AT5G59850
GO:1901137	carbohydrate derivative biosynthetic pro...	BP	6.71921325872272e-16	FMO//CYP79F2//ATSOT17//AT1G21440//AT1G31660//RACK1B//AT1G52930//EMB3108//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//WDR55//UMAMIT12//AT2G37690//AT2G39795//ATLEUD1//ATSPX3//ATCB5-C//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//BCAT4//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//ATIPS1//AT5G02050//SIR//AtPPa6//AT5G11240//ATIMD1//IMS3//IMS2//GR-RBP3
GO:0016143	S-glycoside metabolic process	BP	9.44785021418238e-16	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0019757	glycosinolate metabolic process	BP	9.44785021418238e-16	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0019760	glucosinolate metabolic process	BP	9.44785021418238e-16	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0044550	secondary metabolite biosynthetic proces...	BP	9.79407146575165e-14	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//CYP71B15//IPMI1//APR//AT4G11190//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//TRA2//ATIMD1//IMS3//IMS2
GO:0071704	organic substance metabolic process	BP	5.32969051943504e-13	AT1G03220//AT1G03230//ATERF10//UGT1//ADS1//AT1G07070//ATPCNA1//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G18850//AT1G20380//AT1G21440//AT1G23100//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//AtLPLAT2//IMP4//AtGH9C2//FMO//CYP735A2//AT1G68200//ATELF5A-3//ATH8//PG2//AT1G71870//ATSOT18//NRP1//BLH11//AHL29//ATPDI6//GNR1//ATGSTU20//CYCA2;4//ATPIN4//ATEXP15//AT2G04020//RGF3//AT2G09990//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//CYP79B3//MEL4//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//AT2G36580//AtXTH32//UMAMIT12//AT2G37600//AT2G37690//HTA8//AT2G39795//AT2G40590//AT2G41480//AT2G41890//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//AT2G46170//ATCB5-C//AT2G46850//IAA20//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//AT3G07750//HCC1//AT3G09680//AT3G10610//AT3G12370//AT3G13230//BRL3//CYP90D1//AT3G14390//AT3G15460//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//BCAT4//BE1//PLT1//AT3G23325//ATIPT7//ATSAHH2//AtGRP4//CYP71B15//ATPHB4//AT3G28900//BR6OX2//AT3G43980//ATHD2A//AtXTH31//emb2474//DUT1//ATPHS2//AT3G47370//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPDI1//ATPURM//UBC14//ROC2//AT3G57010//AT3G58700//IPMI1//AT3G61820//IAA30//PLA//APR//PSBQ//AT4G10450//AtGH9C3//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//AT4G16770//ATHB-2//AT4G18440//ACS7//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G29690//AT4G30180//AT4G30800//AT4G31020//AT4G31810//AT4G33905//CSDP1//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//HD2C//SIR//ATNAS1//LAC12//CBB3//AT5G07030//CYP75B1//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//ATXTH20//KAT5//TIM8//AT5G53070//PTAC15//AT5G57785//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//HIPL2//ALX8//AT5G65920//AT5G66080//AT5G66530//AT5G67200//RLK
GO:0019748	secondary metabolic process	BP	8.27670420815303e-13	UGT1//FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//ATGSTU20//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//ATGSTF7//AT2G31790//UMAMIT12//AT2G41480//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//CYP71B15//ATBCAT-3//IPMI1//ATGSTF13//APR//AT4G11190//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//LAC12//AtPPa6//AT5G12110//TRA2//ATIMD1//IMS3//IMS2
GO:0044237	cellular metabolic process	BP	1.60970385688997e-12	ATERF10//UGT1//ADS1//AT1G07070//ATPCNA1//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G18850//AT1G21440//AT1G23100//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//AtLPLAT2//IMP4//FMO//CYP735A2//AT1G68200//ATELF5A-3//ATH8//PG2//AT1G71870//ATSOT18//NRP1//BLH11//AHL29//ATPDI6//GNR1//ATGSTU20//CYCA2;4//ATEXP15//AT2G04020//AT2G09990//AHB1//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//CYP79B3//MEL4//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//AT2G36580//AtXTH32//UMAMIT12//AT2G37600//AT2G37690//HTA8//AT2G39795//AT2G40590//AT2G41480//AT2G41890//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//ATCB5-C//AT2G46850//IAA20//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//AT3G07750//HCC1//AT3G09680//AT3G10610//AT3G12370//AT3G13230//BRL3//AT3G14390//AT3G15460//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//BCAT4//PLT1//AT3G23325//ATIPT7//ATSAHH2//AtGRP4//CYP71B15//ATPHB4//AT3G28900//AT3G43980//ATHD2A//AtXTH31//emb2474//DUT1//ATPHS2//AT3G47370//ATBCAT-3//CYCD3;3//AT3G50230//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPDI1//ATPURM//UBC14//ROC2//AT3G57010//AT3G58700//IPMI1//IAA30//ATGSTF13//APR//PSBQ//AT4G10450//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//APR3//ACS7//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G29690//AT4G30180//AT4G30800//AT4G31020//AT4G31810//AT4G33905//CSDP1//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//HD2C//SIR//ATNAS1//LAC12//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//ATXTH20//KAT5//TIM8//AT5G53070//PTAC15//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G65920//AT5G66080//AT5G67200//RLK
GO:0044281	small molecule metabolic process	BP	1.94318335896838e-12	UGT1//ADS1//ATPCNA1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//AT1G31660//RACK1B//AT1G52930//GRI//EMB3108//ASP4//FMO//ATH8//AT1G71870//ATSOT18//NRP1//ATPDI6//GNR1//ATGSTU20//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATGSTF7//AT2G31790//WDR55//CYP710A2//AT2G36580//UMAMIT12//AT2G37690//AT2G39795//ATLEUD1//AT2G44040//ATCB5-C//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//HCC1//AT3G10610//CYP90D1//AT3G14390//AT3G15460//RACK1C//BCAT4//ATSAHH2//CYP71B15//BR6OX2//ATHD2A//DUT1//ATBCAT-3//AtDWF4//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPDI1//ATPURM//AT3G57010//IPMI1//APR//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G31810//AT4G33905//CSDP1//ATIPS1//AT5G02050//SIR//ATNAS1//CBB3//AT5G08180//AtPPa6//ATMIPS3//AT5G11240//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//KAT5//AT5G57890//AT5G59240//GR-RBP3//PDCB1//AT5G62210//ALX8
GO:1901659	glycosyl compound biosynthetic process	BP	3.24569124814226e-12	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0006807	nitrogen compound metabolic process	BP	6.06140476256539e-12	ATERF10//UGT1//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//IMP4//FMO//CYP735A2//AT1G68200//ATSOT18//BLH11//GNR1//ATGSTU20//CYCA2;4//AT2G20450//EDA27//CYP79B3//AT2G24700//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G32060//AT2G32220//WDR55//AT2G37690//HTA8//AT2G39795//AT2G42710//RPL16A//ATLEUD1//AT2G44040//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G14390//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//AT3G23325//ATIPT7//ATSAHH2//AtGRP4//CYP71B15//ATPHB4//AT3G28900//ATHD2A//emb2474//DUT1//AT3G47370//ATBCAT-3//CYCD3;3//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//ROC2//AT3G57010//AT3G58700//IPMI1//IAA30//APR//AT4G10450//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//ACS7//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G30180//AT4G30800//AT4G31810//CSDP1//CYCD5;1//ATIPS1//AT5G02050//HD2C//SIR//ATNAS1//AT5G08180//AtPPa6//AIL6//AT5G11240//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//TIM8//PTAC15//AT5G57890//AT5G59240//AT5G59850//GR-RBP3//PDCB1//AT5G62290//ALX8//AT5G67200
GO:0009058	biosynthetic process	BP	1.29017582428591e-11	ATERF10//ADS1//AT1G07070//ATPCNA1//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G21440//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//AAC42//ASP4//AtLPLAT2//FMO//CYP735A2//AT1G68200//ATELF5A-3//ATH8//PG2//ATSOT18//NRP1//BLH11//GNR1//ATGSTU20//CYCA2;4//ATPIN4//AT2G04020//AT2G09990//AT2G19750//AT2G20450//CYP79B3//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//UMAMIT12//AT2G37600//AT2G37690//AT2G39795//AT2G40590//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//AK3//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G09680//AT3G10610//AT3G12370//CYP90D1//AT3G14390//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//ATIPT7//ATSAHH2//CYP71B15//AT3G28900//BR6OX2//AT3G43980//ATHD2A//emb2474//DUT1//ATPHS2//AT3G47370//CYCD3;3//AtDWF4//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//AT3G58700//IPMI1//IAA30//APR//PSBQ//AT4G10450//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G16770//ATHB-2//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CSDP1//CYCD5;1//ATBRI1//ATIPS1//AT5G02050//HD2C//SIR//ATNAS1//CBB3//CYP75B1//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//POLA3//ATERF-9//mtACP3//KAT5//TIM8//AT5G53070//PTAC15//AT5G57785//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62210//ALX8//AT5G67200"
GO:0042446	hormone biosynthetic process	BP	1.37897591901765e-11	ATSOT17//CYP735A2//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//ATCB5-C//CYP90D1//BCAT4//ATIPT7//CYP71B15//BR6OX2//AtDWF4//TRP3//AT3G57010//APR//CYP83A1//SIR//CBB3//AtPPa6//IMS3//IMS2
GO:1901566	organonitrogen compound biosynthetic pro...	BP	1.53036590205659e-11	encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G31660//RACK1B//AT1G52930//EMB3108//CYP735A2//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//WDR55//AT2G37690//AT2G39795//ATLEUD1//AT2G44040//ATCB5-C//AK3//AT3G06530//ATYLMG1-1//AT3G10610//AT3G14390//AT3G15460//RACK1C//BCAT4//ATSAHH2//CYP71B15//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//IPMI1//APR//AT4G12600//ATLEUC1//CYP83A1//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//ATIPS1//AT5G02050//SIR//ATNAS1//AtPPa6//AT5G11240//ATIMD1//IMS3//IMS2//AT5G57890//GR-RBP3//PDCB1
GO:1901576	organic substance biosynthetic process	BP	1.82581362110943e-11	ATERF10//ADS1//AT1G07070//ATPCNA1//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G21440//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//AAC42//ASP4//AtLPLAT2//FMO//CYP735A2//AT1G68200//ATELF5A-3//ATH8//PG2//ATSOT18//NRP1//BLH11//ATGSTU20//CYCA2;4//ATPIN4//AT2G04020//AT2G09990//AT2G19750//AT2G20450//CYP79B3//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//UMAMIT12//AT2G37600//AT2G37690//AT2G39795//AT2G40590//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//AK3//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G09680//AT3G10610//AT3G12370//CYP90D1//AT3G14390//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//ATSAHH2//CYP71B15//AT3G28900//BR6OX2//AT3G43980//ATHD2A//DUT1//ATPHS2//AT3G47370//CYCD3;3//AtDWF4//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//AT3G58700//IPMI1//IAA30//APR//AT4G10450//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G16770//ATHB-2//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CSDP1//CYCD5;1//ATBRI1//ATIPS1//AT5G02050//HD2C//SIR//ATNAS1//CBB3//CYP75B1//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//POLA3//ATERF-9//mtACP3//KAT5//AT5G53070//PTAC15//AT5G57785//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62210//ALX8//AT5G67200
GO:0010817	regulation of hormone levels	BP	4.53243338023047e-11	ATSOT17//CYP735A2//PG2//ATSOT18//ATGSTU20//ATPIN4//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//ATCB5-C//CYP90D1//BCAT4//ATIPT7//CYP71B15//BR6OX2//GLV3//AtDWF4//TRP3//AT3G57010//APR//CYP83A1//ATBRI1//SIR//CBB3//AtPPa6//IMS3//IMS2
GO:0071840	cellular component organization or bioge...	BP	4.93516700793978e-11	AT1G04770//UGT1//AT1G07070//ATPCNA1//AT1G08220//AT1G15250//AT1G18850//ATEXP11//AT1G25260//AT1G26470//AT-EXP10//AT1G31660//RACK1B//AT1G50400//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//TIM13//IMP4//ATELF5A-3//AT-EXP1//ATH8//PG2//NRP1//CYCA2;4//ATPIN4//ATEXP15//AT2G18410//ATPRMT1A//AT2G20450//EDA27//CYP79B3//ATEXP6//ATPCNA2//WDR55//AtXTH32//AT2G37400//AT2G37470//HTA8//ATEXP4//AT2G39795//AT2G40590//AT2G41480//AT2G45710//ATYLMG1-1//AT3G07750//HCC1//AT3G10610//AT3G12370//AT3G13230//AT3G15680//AT3G16080//ATIPT7//ATSAHH2//AtGRP4//CYP71B15//AT3G28900//ATHD2A//AtXTH31//AT3G45930//AT3G46320//emb2474//AT3G49320//AtDWF4//TRP3//ROC2//UMAMIT29//AT4G12600//AtENODL19//AT4G15770//ATHB-2//AT4G22380//AR192//RRP41L//ATEXPB3//ARAC7//ATPRMT11//AT4G30800//AT4G31810//CSDP1//AT4G36680//ATBRI1//SIR//ATNAS1//CBB3//AT5G08180//AtPPa6//AT5G10390//AT5G11240//AT5G11750//AT5G15750//AT5G20160//AT5G22100//LSU2//AtENODL13//HTA7//AT5G38890//ATPHB3//POLA3//TIM8//AT5G53070//PTAC15//AT5G59240//AT5G59850//AT5G59970//AT5G60670//GR-RBP3//PDCB1//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G67200
GO:0044711	single-organism biosynthetic process	BP	6.92363055410287e-11	ADS1//ATPCNA1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//AT1G31660//RACK1B//AT1G52930//GRI//EMB3108//ASP4//AtLPLAT2//FMO//ATELF5A-3//PG2//ATSOT18//NRP1//ATGSTU20//CYCA2;4//ATPIN4//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//HDA13//ATSMO2//ATPCNA2//ATGSTF7//AT2G31790//WDR55//CYP710A2//UMAMIT12//AT2G37690//AT2G39795//ATLEUD1//AT2G44040//ATSPX3//ATCB5-C//AK3//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G10610//CYP90D1//AT3G14390//AT3G15460//RACK1C//BCAT4//ATSAHH2//CYP71B15//BR6OX2//ATHD2A//ATPHS2//CYCD3;3//AtDWF4//LPPepsilon1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//IPMI1//APR//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//CSDP1//CYCD5;1//ATBRI1//ATIPS1//AT5G02050//SIR//ATNAS1//CBB3//CYP75B1//AT5G08180//AtPPa6//ATMIPS3//AT5G11240//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//KAT5//PTAC15//AT5G57890//AT5G59240//GR-RBP3//PDCB1//AT5G62210//ALX8
GO:0042445	hormone metabolic process	BP	9.4566618530328e-11	ATSOT17//CYP735A2//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//ATCB5-C//CYP90D1//BCAT4//ATIPT7//CYP71B15//BR6OX2//AtDWF4//TRP3//AT3G57010//APR//CYP83A1//SIR//CBB3//AtPPa6//IMS3//IMS2
GO:1901360	organic cyclic compound metabolic proces...	BP	1.10176273492388e-10	ATERF10//UGT1//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//IMP4//CYP735A2//AT1G68200//ATSOT18//BLH11//ATGSTU20//CYCA2;4//AT2G20450//EDA27//CYP79B3//AT2G24700//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G32060//AT2G32220//WDR55//CYP710A2//AT2G37690//HTA8//AT2G39795//AT2G41480//AT2G42710//RPL16A//ATLEUD1//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G07750//AT3G10610//AT3G12370//AT3G13230//CYP90D1//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//AT3G23325//ATIPT7//AtGRP4//CYP71B15//ATPHB4//AT3G28900//BR6OX2//ATHD2A//emb2474//DUT1//AT3G47370//CYCD3;3//AtDWF4//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//ROC2//AT3G57010//AT3G58700//IAA30//APR//AT4G10450//AT4G11190//AT4G12600//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G30180//AT4G30800//AT4G31810//CSDP1//CYCD5;1//AT5G02050//HD2C//SIR//ATNAS1//LAC12//CBB3//AT5G08180//AtPPa6//AIL6//AT5G11240//TRA2//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//TIM8//PTAC15//AT5G57890//AT5G59240//AT5G59850//GR-RBP3//AT5G62290//ALX8//AT5G67200
GO:0008152	metabolic process	BP	1.41629559272297e-10	ATFRO2//AT1G03220//AT1G03230//ATERF10//UGT1//ADS1//AT1G07070//ATPCNA1//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G18850//AT1G20380//AT1G21440//AT1G23100//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//AtLPLAT2//IMP4//AT1G64185//AtGH9C2//FMO//CYP735A2//AT1G68200//ATELF5A-3//ATH8//PG2//AT1G71870//ATSOT18//NRP1//BLH11//AHL29//ATPDI6//GNR1//ATGSTU20//CYCA2;4//ATPIN4//ATEXP15//AT2G04020//RGF3//AT2G09990//AHB1//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//CYP79B3//MEL4//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//AT2G36580//AtXTH32//UMAMIT12//AT2G37600//AT2G37690//HTA8//AT2G39020//AT2G39795//AT2G40590//AT2G41480//AT2G41890//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//AT2G46170//ATCB5-C//AT2G46850//IAA20//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//AT3G07750//HCC1//AT3G09680//AT3G10610//AT3G12370//AT3G12900//AT3G13230//BRL3//CYP90D1//AT3G14390//AT3G15460//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//BCAT4//BE1//PLT1//AT3G23325//ATIPT7//ATSAHH2//AtGRP4//CYP71B15//ATPHB4//AT3G28900//BR6OX2//AT3G43980//ATHD2A//AtXTH31//emb2474//DUT1//ATPHS2//AT3G47370//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPDI1//ATPURM//UBC14//ROC2//AT3G57010//AT3G58700//ATMTP3//IPMI1//AT3G61820//IAA30//ATGSTF13//PLA//APR//ATMSRB4//PSBQ//SAPX//AT4G08780//AT4G10450//AtGH9C3//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//AT4G16770//ATHB-2//AT4G18440//APR3//ACS7//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G29690//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CYP82C4//AT4G33905//CSDP1//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//HD2C//SIR//ATNAS1//PRX52//LAC12//CBB3//AT5G07030//CYP75B1//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//NIC3//AT5G23690//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//ATXTH20//KAT5//TIM8//AT5G53070//PTAC15//AT5G57785//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//HIPL2//ALX8//AT5G65920//AT5G66080//AT5G66530//AT5G67200//RLK
GO:0009684	indoleacetic acid biosynthetic process	BP	1.54442050428653e-10	ATSOT17//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2
GO:0044249	cellular biosynthetic process	BP	1.69001019827492e-10	ATERF10//ADS1//AT1G07070//ATPCNA1//FMO//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//CYP79F2//ATSOT17//AT1G21440//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//AAC42//ASP4//AtLPLAT2//FMO//CYP735A2//AT1G68200//ATELF5A-3//ATH8//ATSOT18//BLH11//GNR1//ATGSTU20//CYCA2;4//AT2G04020//AT2G09990//AT2G19750//AT2G20450//CYP79B3//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G31790//AT2G32060//AT2G32220//WDR55//CYP710A2//UMAMIT12//AT2G37600//AT2G37690//AT2G39795//AT2G40590//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//AK3//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G09680//AT3G10610//AT3G12370//AT3G14390//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//ATIPT7//ATSAHH2//CYP71B15//AT3G28900//AT3G43980//ATHD2A//emb2474//DUT1//ATPHS2//AT3G47370//CYCD3;3//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//AT3G58700//IPMI1//IAA30//APR//PSBQ//AT4G10450//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//ATHB-2//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CSDP1//CYCD5;1//ATIPS1//AT5G02050//HD2C//SIR//ATNAS1//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//POLA3//ATERF-9//mtACP3//TIM8//AT5G53070//PTAC15//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62210//ALX8//AT5G67200
GO:0009683	indoleacetic acid metabolic process	BP	2.06062399950566e-10	ATSOT17//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2
GO:0044272	sulfur compound biosynthetic process	BP	3.81366801883424e-10	FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//ATSAHH2//CYP71B15//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0042435	indole-containing compound biosynthetic ...	BP	3.91390849654021e-10	ATSOT17//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2//AT5G57890
GO:0044699	single-organism process	BP	4.24243855341521e-10	ATFRO2//ATERF10//UGT1//ADS1//AT1G06830//ATPCNA1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G18850//ATEXP11//AT1G21440//AT1G26470//AT-EXP10//ATERF12//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AT1G51380//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//TIM13//ASP4//AtLPLAT2//AT1G63720//FMO//CYP735A2//DVL5//ATELF5A-3//AT-EXP1//ATH8//PG2//AT1G71870//CLE1//ATSOT18//ATBS1//NRP1//SRS5//AHL29//ATPDI6//GNR1//ATGSTU20//AT1G78990//CYCA2;4//ATPIN4//ATEXP15//AT2G04020//RGF3//ABCC13//AHB1//PIP2;8//AT2G18410//AT2G18900//ATPRMT1A//EDA27//LAX2//CYP79B3//AtGDU4//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATEXP6//ATSMO2//ATPCNA2//ATGSTF7//CLE4//CLE7//AT2G31790//AT2G33620//WDR55//CYP710A2//AT2G36580//AT2G37400//UMAMIT12//AT2G37690//HTA8//ATEXP4//AT2G39795//AT2G41480//AT2G41890//ATLEUD1//AT2G44040//cycp3;1//ATSPX3//MAP1A//AT2G46170//ATCB5-C//IAA20//AK3//ATGSTF11//GDH3//GLP8//AT3G06530//AtRABA5b//ATYLMG1-1//AT3G07750//HCC1//MEE67//AT3G10610//AT3G12900//BRL3//CYP90D1//AT3G14390//AT3G15240//AT3G15460//RACK1C//ATUNG//BCAT4//AT3G20240//BE1//PLT1//ATIPT7//ATSAHH2//IDL1//CYP71B15//BR6OX2//GLV3//AtGDU6//ATHD2A//emb2474//DUT1//ATPHS2//AT3G49320//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//GATA18//LPPepsilon1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//PIP2;5//ATPDI1//ATPURM//ROC2//AT3G57010//ATMTP3//IPMI1//AHL18//IAA30//ATGSTF13//PLA//UMAMIT29//APR//ATMSRB4//PSBQ//SAPX//AT4G08780//AT4G11190//BASS5//AT4G12600//AtENODL19//ATLEUC1//CYP83A1//AT4G15770//AT4G16680//AT4G16770//ATHB-2//AT4G18440//ATIRT1//APR3//AtSWEET14//ATGDU2//ACS7//AR192//RRP41L//ATEXPB3//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ARAC7//ADS1//ATPRMT11//AT4G29690//AT4G30800//AT4G31810//CYP82C4//AT4G33905//CSDP1//AT4G36680//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//HD2C//TFL-1//SIR//ATNAS1//PRX52//LAC12//CBB3//CYP75B1//AT5G08180//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G12110//TRA2//LEP//ATIMD1//AT5G15750//AtbZIP3//IMS3//IMS2//AT5G23830//AtENODL13//DGR2//HTA7//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G38030//AT5G38890//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//KAT5//AAP6//AtSWEET13//TIM8//PTAC15//FLA1//AT5G57170//AT5G57890//AT5G59240//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G66530//RALFL34//AT5G67200//RLK
GO:0006790	sulfur compound metabolic process	BP	5.68064695754035e-10	FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//ATSMO2//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//ATSAHH2//CYP71B15//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//APR3//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2//PDCB1//ALX8"
GO:0009851	auxin biosynthetic process	BP	7.94989369057069e-10	ATSOT17//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2
GO:0042430	indole-containing compound metabolic pro...	BP	1.01053186572473e-09	ATSOT17//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2//AT5G57890
GO:0044238	primary metabolic process	BP	1.32454760138186e-09	AT1G03220//AT1G03230//ATERF10//UGT1//ADS1//AT1G07070//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G15250//AT1G16220//ATSOT17//AT1G18850//AT1G20380//AT1G23100//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//AtLPLAT2//IMP4//AtGH9C2//FMO//AT1G68200//ATELF5A-3//ATH8//PG2//AT1G71870//ATSOT18//NRP1//BLH11//AHL29//ATPDI6//ATGSTU20//CYCA2;4//ATPIN4//AT2G04020//AT2G09990//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//CYP79B3//AT2G24700//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//AT2G32060//AT2G32220//WDR55//CYP710A2//AT2G36580//AT2G37600//AT2G37690//HTA8//AT2G39795//AT2G40590//AT2G41890//AT2G42710//RPL16A//ATLEUD1//AT2G44040//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//AT2G46170//ATCB5-C//AT2G46850//IAA20//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//AT3G07750//AT3G09680//AT3G10610//AT3G12370//AT3G13230//BRL3//CYP90D1//AT3G14390//AT3G15460//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//BCAT4//BE1//PLT1//AT3G23325//ATIPT7//ATSAHH2//AtGRP4//ATPHB4//AT3G28900//BR6OX2//AT3G43980//ATHD2A//emb2474//DUT1//ATPHS2//AT3G47370//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//BEH1//GATA18//LPPepsilon1//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPDI1//ATPURM//UBC14//ROC2//AT3G57010//AT3G58700//IPMI1//AT3G61820//IAA30//PLA//APR//PSBQ//AT4G10450//AtGH9C3//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//ACS7//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G29690//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CSDP1//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//HD2C//SIR//CBB3//AT5G07030//AT5G08180//AT5G09500//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G11750//AT5G12110//TRA2//LEP//ATIMD1//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//ATXTH20//KAT5//TIM8//AT5G53070//PTAC15//AT5G57890//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//PDCB1//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//HIPL2//ALX8//AT5G65920//AT5G66080//AT5G66530//AT5G67200//RLK
GO:0034641	cellular nitrogen compound metabolic pro...	BP	1.53828733691635e-09	ATERF10//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//ASP4//IMP4//CYP735A2//AT1G68200//ATSOT18//BLH11//GNR1//ATGSTU20//CYCA2;4//AT2G20450//EDA27//CYP79B3//AT2G24700//HDA13//ATRPAC14//ATPCNA2//ATGSTF7//AT2G32060//AT2G32220//WDR55//AT2G37690//HTA8//AT2G39795//AT2G42710//RPL16A//ATLEUD1//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//AT3G23325//ATIPT7//AtGRP4//CYP71B15//ATPHB4//AT3G28900//ATHD2A//emb2474//DUT1//AT3G47370//CYCD3;3//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//ROC2//AT3G57010//AT3G58700//IAA30//APR//AT4G10450//AT4G12600//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G30180//AT4G30800//AT4G31810//CSDP1//CYCD5;1//AT5G02050//HD2C//SIR//ATNAS1//AT5G08180//AtPPa6//AIL6//AT5G11240//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//TIM8//PTAC15//AT5G57890//AT5G59240//AT5G59850//GR-RBP3//AT5G62290//ALX8//AT5G67200
GO:0034754	cellular hormone metabolic process	BP	1.69213763632282e-09	ATSOT17//CYP735A2//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//ATIPT7//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2
GO:0044763	single-organism cellular process	BP	1.87217165876303e-09	ATERF10//UGT1//ADS1//AT1G06830//ATPCNA1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//ATEXP11//AT1G21440//AT-EXP10//ATERF12//AT1G31660//RACK1B//AT1G50400//PLT2//AT1G51380//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//TIM13//ASP4//AtLPLAT2//AT1G63720//FMO//ATELF5A-3//AT-EXP1//ATH8//PG2//AT1G71870//CLE1//ATSOT18//ATBS1//NRP1//AHL29//ATPDI6//GNR1//ATGSTU20//AT1G78990//CYCA2;4//ATPIN4//ATEXP15//RGF3//ABCC13//AHB1//PIP2;8//ATPRMT1A//EDA27//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATEXP6//ATSMO2//ATPCNA2//ATGSTF7//CLE4//CLE7//AT2G31790//WDR55//CYP710A2//AT2G36580//UMAMIT12//AT2G37690//HTA8//ATEXP4//AT2G39795//AT2G41480//AT2G41890//ATLEUD1//AT2G44040//cycp3;1//ATSPX3//ATCB5-C//AK3//ATGSTF11//GDH3//GLP8//AT3G06530//AtRABA5b//ATYLMG1-1//HCC1//AT3G10610//BRL3//AT3G14390//AT3G15460//RACK1C//ATUNG//BCAT4//AT3G20240//PLT1//ATIPT7//ATSAHH2//IDL1//CYP71B15//GLV3//ATHD2A//emb2474//DUT1//ATPHS2//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//LPPepsilon1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//PIP2;5//ATPDI1//ATPURM//ROC2//ATMTP3//IPMI1//ATGSTF13//UMAMIT29//APR//PSBQ//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//ATHB-2//AT4G18440//ATIRT1//APR3//ACS7//AR192//RRP41L//ATEXPB3//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ARAC7//ADS1//ATPRMT11//AT4G29690//AT4G30800//AT4G31810//AT4G33905//CSDP1//CYCD5;1//ATBRI1//ATIPS1//TAAC//AT5G02050//TFL-1//SIR//ATNAS1//LAC12//CBB3//AT5G08180//AtPPa6//ATMIPS3//AIL6//AT5G11240//AT5G12110//TRA2//ATIMD1//AtbZIP3//IMS3//IMS2//AtENODL13//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G38030//ATPHB3//POLA3//ATERF-9//mtACP3//CYP708//KAT5//TIM8//PTAC15//AT5G57170//AT5G57890//AT5G59240//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//RALFL34//AT5G67200//RLK
GO:0042254	ribosome biogenesis	BP	2.06508333773994e-09	AT1G07070//AT1G15250//AT1G25260//AT1G31660//RACK1B//AT1G52930//IMP4//AT2G20450//EDA27//AT2G40590//AT2G45710//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G16080//AtGRP4//AT3G28900//ATHD2A//ROC2//AT4G12600//AT4G15770//AT4G22380//AT5G11240//AT5G11750//AT5G20160//AT5G22100//AT5G53070//AT5G59240//AT5G60670
GO:0009850	auxin metabolic process	BP	2.12492010789898e-09	ATSOT17//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//SIR//AtPPa6//IMS3//IMS2
GO:1901135	carbohydrate derivative metabolic proces...	BP	2.77630765384104e-09	FMO//CYP79F2//ATSOT17//AT1G21440//AT1G31660//RACK1B//AT1G52930//EMB3108//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//WDR55//UMAMIT12//AT2G37690//AT2G39795//ATLEUD1//ATSPX3//ATCB5-C//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//BCAT4//ATHD2A//DUT1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//ATIPS1//AT5G02050//SIR//AtPPa6//AT5G11240//ATIMD1//IMS3//IMS2//GR-RBP3
GO:1901564	organonitrogen compound metabolic proces...	BP	2.78401530179703e-09	UGT1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G31660//RACK1B//AT1G52930//EMB3108//ASP4//FMO//CYP735A2//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//WDR55//AT2G37690//AT2G39795//ATLEUD1//AT2G44040//ATCB5-C//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//AT3G10610//AT3G14390//AT3G15460//RACK1C//BCAT4//ATIPT7//ATSAHH2//CYP71B15//ATHD2A//DUT1//ATBCAT-3//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//IPMI1//APR//AT4G12600//ATLEUC1//CYP83A1//AT4G18440//ACS7//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//ATIPS1//AT5G02050//SIR//ATNAS1//AtPPa6//AT5G11240//ATIMD1//IMS3//IMS2//AT5G57890//GR-RBP3//PDCB1
GO:0022613	ribonucleoprotein complex biogenesis	BP	3.46095839218729e-09	AT1G07070//AT1G15250//AT1G25260//AT1G31660//RACK1B//AT1G52930//IMP4//AT2G20450//EDA27//AT2G40590//AT2G45710//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G16080//AtGRP4//AT3G28900//ATHD2A//ROC2//AT4G12600//AT4G15770//AT4G22380//AT5G11240//AT5G11750//AT5G20160//AT5G22100//AT5G53070//AT5G59240//AT5G60670
GO:0006725	cellular aromatic compound metabolic pro...	BP	4.24858967484465e-09	ATERF10//UGT1//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//IMP4//CYP735A2//AT1G68200//ATSOT18//BLH11//ATGSTU20//CYCA2;4//AT2G20450//EDA27//CYP79B3//AT2G24700//HDA13//ATRPAC14//ATPCNA2//ATGSTF7//AT2G32060//AT2G32220//WDR55//AT2G37690//HTA8//AT2G39795//AT2G41480//AT2G42710//RPL16A//ATLEUD1//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//AT3G23325//ATIPT7//AtGRP4//CYP71B15//ATPHB4//AT3G28900//ATHD2A//emb2474//DUT1//AT3G47370//CYCD3;3//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//ROC2//AT3G58700//IAA30//APR//AT4G10450//AT4G11190//AT4G12600//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G30180//AT4G30800//AT4G31810//CSDP1//CYCD5;1//AT5G02050//HD2C//SIR//LAC12//AT5G08180//AtPPa6//AIL6//AT5G11240//TRA2//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//TIM8//PTAC15//AT5G57890//AT5G59240//AT5G59850//GR-RBP3//AT5G62290//ALX8//AT5G67200
GO:0006626	protein targeting to mitochondrion	BP	4.47345016866906e-09	AT1G18850//AT1G26470//TIM13//AT2G18410//AT2G37400//AT3G07750//HCC1//emb2474//AT3G49320//AT4G15770//AR192//AT4G36680//AT5G15750//AT5G38890//ATPHB3//TIM8//GR-RBP3//AT5G62290
GO:0070585	protein localization to mitochondrion	BP	4.47345016866906e-09	AT1G18850//AT1G26470//TIM13//AT2G18410//AT2G37400//AT3G07750//HCC1//emb2474//AT3G49320//AT4G15770//AR192//AT4G36680//AT5G15750//AT5G38890//ATPHB3//TIM8//GR-RBP3//AT5G62290
GO:0072655	establishment of protein localization to...	BP	4.47345016866906e-09	AT1G18850//AT1G26470//TIM13//AT2G18410//AT2G37400//AT3G07750//HCC1//emb2474//AT3G49320//AT4G15770//AR192//AT4G36680//AT5G15750//AT5G38890//ATPHB3//TIM8//GR-RBP3//AT5G62290
GO:0046483	heterocycle metabolic process	BP	6.08011675558978e-09	ATERF10//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//IMP4//CYP735A2//AT1G68200//ATSOT18//BLH11//ATGSTU20//CYCA2;4//AT2G20450//EDA27//CYP79B3//AT2G24700//HDA13//ATRPAC14//ATPCNA2//ATGSTF7//AT2G32060//AT2G32220//WDR55//AT2G37690//HTA8//AT2G39795//AT2G42710//RPL16A//ATLEUD1//ATSPX3//AT2G45710//ATWRKY43//ATCB5-C//IAA20//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//BCAT4//PLT1//AT3G23325//ATIPT7//AtGRP4//CYP71B15//ATPHB4//AT3G28900//ATHD2A//emb2474//DUT1//AT3G47370//CYCD3;3//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//ROC2//AT3G58700//IAA30//APR//AT4G10450//AT4G12600//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G30180//AT4G30800//AT4G31810//CSDP1//CYCD5;1//AT5G02050//HD2C//SIR//ATNAS1//AT5G08180//AtPPa6//AIL6//AT5G11240//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//IMS3//IMS2//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//TIM8//PTAC15//AT5G57890//AT5G59240//AT5G59850//GR-RBP3//AT5G62290//ALX8//AT5G67200
GO:0007005	mitochondrion organization	BP	6.85498241122305e-09	AT1G08220//AT1G18850//AT1G26470//TIM13//AT2G18410//AT2G37400//AT3G07750//HCC1//emb2474//AT3G49320//AT4G15770//AR192//AT4G36680//AT5G15750//AT5G38890//ATPHB3//TIM8//GR-RBP3//AT5G62290
GO:1901657	glycosyl compound metabolic process	BP	1.14447545399726e-08	FMO//CYP79F2//ATSOT17//AT1G21440//FMO//ATSOT18//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//AT2G31790//UMAMIT12//ATLEUD1//ATCB5-C//ATGSTF11//BCAT4//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2
GO:0006839	mitochondrial transport	BP	2.11675289131503e-08	AT1G18850//AT1G26470//TIM13//AT2G18410//AT2G37400//AT3G07750//HCC1//AT3G20240//emb2474//AT3G49320//AT4G15770//AR192//AT4G36680//AT5G15750//AT5G38890//ATPHB3//TIM8//GR-RBP3//AT5G62290
GO:0006949	syncytium formation	BP	3.515515002688e-08	AT-EXP10//AT-EXP1//ATEXP15//ATEXP6//ATEXP4//ATEXPB3//AT5G57170//RALFL34
GO:0006220	pyrimidine nucleotide metabolic process	BP	3.96482906079108e-08	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//DUT1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0009165	nucleotide biosynthetic process	BP	4.64411579118582e-08	ATPCNA1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G31660//RACK1B//AT1G52930//EMB3108//HDA13//WDR55//AT2G37690//AT2G39795//AT3G06530//ATYLMG1-1//AT3G10610//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G12600//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//CSDP1//AT5G02050//AT5G08180//AT5G11240//AT5G59240//GR-RBP3
GO:1901293	nucleoside phosphate biosynthetic proces...	BP	5.07757655272537e-08	ATPCNA1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G31660//RACK1B//AT1G52930//EMB3108//HDA13//WDR55//AT2G37690//AT2G39795//AT3G06530//ATYLMG1-1//AT3G10610//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G12600//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//CSDP1//AT5G02050//AT5G08180//AT5G11240//AT5G59240//GR-RBP3
GO:0009220	pyrimidine ribonucleotide biosynthetic p...	BP	7.89063645068212e-08	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0009218	pyrimidine ribonucleotide metabolic proc...	BP	1.03801250897281e-07	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0050896	response to stimulus	BP	1.35744857973338e-07	ATFRO2//AT1G03220//AT1G03230//ATERF10//UGT1//AT1G05710//ADS1//ATSOT17//AT1G21140//RPL10B//ATERF12//AGP5//RACK1B//GRI//ARR3//AT1G63720//ATNUDT1//AT-EXP1//PG2//AT1G71870//CLE1//ATBS1//NRP1//AT1G75590//AHL29//ATPDI6//GNR1//ATGSTU20//AT1G78990//CYCA2;4//ATPIN4//AHB1//PIP2;8//AT2G20940//LAX2//CYP79B3//MEL4//PYL2//HDA13//ATEXP6//ATPCNA2//ATGSTF7//CLE4//CLE7//HTA8//AT2G39795//ATSPX3//MAP1A//AT2G46170//ATCB5-C//IAA20//ATGSTF11//GDH3//AtRABA5b//AT3G12900//BRL3//AT3G15240//RACK1C//ATUNG//ATPUB29//BCAT4//ATSAHH2//AtGRP4//CYP71B15//GLV3//DUT1//ATPHS2//ATBCAT-3//AT3G50230//AtDWF4//LPPepsilon1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//PIP2;5//ATPDI1//ROC2//ATMTP3//IAA30//SAPX//AT4G08780//AT4G11190//BASS5//AtENODL19//ATLEUC1//CYP83A1//ATHB-2//AT4G17720//ATIRT1//AR192//ATEXPB3//ARAC7//ADS1//AT4G30650//AT4G31810//CYP82C4//AT4G33905//CSDP1//ATBRI1//TAAC//HD2C//TFL-1//SIR//ATNAS1//PRX52//CBB3//CYP75B1//AtPPa6//ATMIPS3//AIL6//AT5G12110//TRA2//LEP//ATIMD1//AtbZIP3//IMS3//LSU2//DGR2//AT5G26220//HTA7//AT5G38030//AT5G38940//ATPHB3//ATERF-9//mtACP3//CYP708//KAT5//AAP6//AT5G57170//AT5G57785//AT5G57890//GR-RBP3//PDCB1//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G67200//RLK
GO:0065008	regulation of biological quality	BP	1.35933887452313e-07	ATFRO2//AT1G06830//ATSOT17//CYP735A2//ATH8//PG2//ATSOT18//AHL29//ATPDI6//ATGSTU20//ATPIN4//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//ATCB5-C//HCC1//CYP90D1//BCAT4//ATIPT7//CYP71B15//BR6OX2//GLV3//AtDWF4//TRP3//ATPDI1//AT3G57010//APR//PSBQ//CYP83A1//ATIRT1//APR3//ATBRI1//SIR//CBB3//AtPPa6//ATMIPS3//IMS3//IMS2//AT5G62290
GO:0006221	pyrimidine nucleotide biosynthetic proce...	BP	1.76413767348539e-07	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:1901605	alpha-amino acid metabolic process	BP	3.2597986112278e-07	encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//ASP4//FMO//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//AT2G44040//ATCB5-C//AK3//AT3G14390//BCAT4//ATSAHH2//TRP3//IPMI1//APR//CYP83A1//ACS7//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2//AT5G57890//PDCB1
GO:0072527	pyrimidine-containing compound metabolic...	BP	3.3811139910177e-07	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//DUT1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0072528	pyrimidine-containing compound biosynthe...	BP	4.22910990259299e-07	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0022622	root system development	BP	4.75093799245671e-07	RACK1B//PLT2//PG2//ATBS1//NRP1//ATPIN4//RGF3//LAX2//IAA20//RACK1C//PLT1//IDL1//IAA30//ATHB-2//ATIRT1//ATBRI1//CBB3//AIL6//DGR2//ATPHB3//CYP708//FLA1
GO:0048364	root development	BP	4.75093799245671e-07	RACK1B//PLT2//PG2//ATBS1//NRP1//ATPIN4//RGF3//LAX2//IAA20//RACK1C//PLT1//IDL1//IAA30//ATHB-2//ATIRT1//ATBRI1//CBB3//AIL6//DGR2//ATPHB3//CYP708//FLA1
GO:0065007	biological regulation	BP	5.47678891837296e-07	ATFRO2//ATERF10//AT1G06830//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//ATSOT17//AT1G26470//ATERF12//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//GRI//ARR3//AT1G63720//CYP735A2//AT1G68200//ATELF5A-3//AT-EXP1//ATH8//PG2//CLE1//ATSOT18//ATBS1//BLH11//AHL29//ATPDI6//ATGSTU20//AT1G78990//CYCA2;4//ATPIN4//RGF3//AHB1//ATPRMT1A//LAX2//CYP79B3//AT2G24700//AtGDU4//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATPCNA2//ATGSTF7//CLE4//CLE7//HTA8//AT2G39795//ATLEUD1//cycp3;1//ATSPX3//ATWRKY43//ATCB5-C//IAA20//GDH3//AtRABA5b//HCC1//BRL3//CYP90D1//JAL30//AT3G19500//BCAT4//PLT1//ATIPT7//CYP71B15//BR6OX2//GLV3//AtGDU6//ATBCAT-3//CYCD3;3//AT3G50230//AtDWF4//BEH1//GATA18//AT3G54390//TRP3//ATPDI1//ROC2//AT3G57010//IAA30//PLA//APR//PSBQ//AT4G11190//CYP83A1//ATHB-2//ATIRT1//APR3//ATGDU2//RRP41L//ARAC7//ADS1//ATPRMT11//AT4G30180//AT4G30800//AT4G31810//CYCD5;1//ATBRI1//HD2C//TFL-1//SIR//CBB3//AT5G08180//AtPPa6//ATMIPS3//AIL6//AT5G11240//LEP//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//POLA3//ATERF-9//mtACP3//PTAC15//GR-RBP3//PDCB1//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G67200//RLK
GO:0006996	organelle organization	BP	5.96036767992352e-07	AT1G04770//UGT1//ATPCNA1//AT1G08220//AT1G18850//AT1G26470//AT1G50400//AT1G52930//G-H2AX//TIM13//ATH8//NRP1//AT2G18410//ATPRMT1A//EDA27//ATEXP6//ATPCNA2//WDR55//AT2G37400//AT2G37470//HTA8//AT2G39795//ATYLMG1-1//AT3G07750//HCC1//AT3G10610//ATIPT7//ATSAHH2//AT3G45930//AT3G46320//emb2474//AT3G49320//AtENODL19//AT4G15770//AR192//RRP41L//ARAC7//ATPRMT11//AT4G30800//AT4G31810//CSDP1//AT4G36680//SIR//AT5G08180//AT5G10390//AT5G15750//LSU2//AtENODL13//HTA7//AT5G38890//ATPHB3//POLA3//TIM8//PTAC15//AT5G59970//GR-RBP3//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G67200
GO:0044283	small molecule biosynthetic process	BP	9.02729508010543e-07	ADS1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//GRI//ASP4//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//CYP710A2//ATLEUD1//AT2G44040//ATCB5-C//AK3//CYP90D1//AT3G14390//BCAT4//ATSAHH2//CYP71B15//BR6OX2//AtDWF4//TRP3//ATPURM//AT3G57010//IPMI1//APR//ATLEUC1//CYP83A1//ACS7//ATIPS1//SIR//ATNAS1//CBB3//AtPPa6//ATMIPS3//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//AT5G57890//PDCB1//AT5G62210//ALX8
GO:0044710	single-organism metabolic process	BP	1.02169885998414e-06	ATFRO2//UGT1//ADS1//ATPCNA1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//AT1G31660//RACK1B//AT1G52930//GRI//EMB3108//ASP4//AtLPLAT2//FMO//CYP735A2//ATELF5A-3//ATH8//PG2//AT1G71870//ATSOT18//NRP1//ATPDI6//GNR1//ATGSTU20//CYCA2;4//ATPIN4//AT2G04020//ATPRMT1A//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//PYL2//HDA13//ATSMO2//ATPCNA2//ATGSTF7//AT2G31790//WDR55//CYP710A2//AT2G36580//UMAMIT12//AT2G37690//HTA8//AT2G39795//AT2G41480//ATLEUD1//AT2G44040//ATSPX3//AT2G46170//ATCB5-C//AK3//ATGSTF11//GDH3//AT3G06530//ATYLMG1-1//HCC1//AT3G10610//AT3G12900//CYP90D1//AT3G14390//AT3G15460//RACK1C//ATUNG//BCAT4//ATIPT7//ATSAHH2//CYP71B15//BR6OX2//ATHD2A//DUT1//ATPHS2//ATBCAT-3//CYCD3;3//AtDWF4//LPPepsilon1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPDI1//ATPURM//AT3G57010//IPMI1//ATGSTF13//PLA//APR//ATMSRB4//SAPX//AT4G08780//AT4G11190//BASS5//AT4G12600//ATLEUC1//CYP83A1//AT4G16770//AT4G18440//APR3//ACS7//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G29690//AT4G30800//AT4G31810//CYP82C4//AT4G33905//CSDP1//CYCD5;1//ATBRI1//ATIPS1//AT5G02050//SIR//ATNAS1//PRX52//LAC12//CBB3//CYP75B1//AT5G08180//AtPPa6//ATMIPS3//AT5G11240//AT5G12110//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//POLA3//mtACP3//CYP708//KAT5//PTAC15//AT5G57890//AT5G59240//GR-RBP3//PDCB1//AT5G62210//ALX8//AT5G66530//AT5G67200
GO:0009260	ribonucleotide biosynthetic process	BP	1.272681075076e-06	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G37690//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0046390	ribose phosphate biosynthetic process	BP	1.272681075076e-06	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G37690//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:1901362	organic cyclic compound biosynthetic pro...	BP	1.31652071316235e-06	ATERF10//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G26470//ATERF12//NRPA2//AT1G31660//RACK1B//PLT2//AtWIP5//AT1G52930//GRI//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//AAC42//CYP735A2//AT1G68200//ATSOT18//BLH11//ATGSTU20//CYP79B3//AT2G24700//HDA13//ATSMO2//ATRPAC14//ATPCNA2//ATGSTF7//WDR55//CYP710A2//AT2G37690//AT2G39795//AT2G42710//ATLEUD1//ATSPX3//ATWRKY43//ATCB5-C//IAA20//AT3G06530//ATYLMG1-1//AT3G10610//AT3G12370//CYP90D1//AT3G15460//RACK1C//AT3G19500//BCAT4//PLT1//CYP71B15//BR6OX2//ATHD2A//AtDWF4//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//IAA30//APR//AT4G11190//AT4G12600//CYP83A1//ATHB-2//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G31810//CSDP1//AT5G02050//HD2C//SIR//ATNAS1//CBB3//AT5G08180//AtPPa6//AIL6//AT5G11240//TRA2//LEP//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//POLA3//ATERF-9//PTAC15//AT5G57890//AT5G59240//GR-RBP3//ALX8//AT5G67200
GO:0006520	cellular amino acid metabolic process	BP	1.31756739925934e-06	UGT1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//ASP4//FMO//ATSOT18//ATGSTU20//CYP79B3//ATGSTF7//ATLEUD1//AT2G44040//ATCB5-C//AK3//GDH3//AT3G14390//BCAT4//ATSAHH2//ATBCAT-3//TRP3//IPMI1//APR//ATLEUC1//CYP83A1//ACS7//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2//AT5G57890//PDCB1
GO:0044271	cellular nitrogen compound biosynthetic ...	BP	1.70541533139904e-06	ATERF10//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G26470//ATERF12//NRPA2//AT1G31660//RACK1B//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//AAC42//CYP735A2//AT1G68200//ATSOT18//BLH11//GNR1//ATGSTU20//CYP79B3//AT2G24700//HDA13//ATRPAC14//ATPCNA2//ATGSTF7//WDR55//AT2G37690//AT2G39795//AT2G42710//ATLEUD1//ATSPX3//ATWRKY43//ATCB5-C//IAA20//AT3G06530//ATYLMG1-1//AT3G10610//AT3G12370//AT3G15460//RACK1C//AT3G19500//BCAT4//PLT1//CYP71B15//ATHD2A//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//AT3G57010//IAA30//APR//AT4G12600//CYP83A1//ATHB-2//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G31810//CSDP1//AT5G02050//HD2C//SIR//ATNAS1//AT5G08180//AtPPa6//AIL6//AT5G11240//LEP//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//POLA3//ATERF-9//PTAC15//AT5G57890//AT5G59240//GR-RBP3//ALX8//AT5G67200
GO:0044085	cellular component biogenesis	BP	1.86558290010699e-06	UGT1//AT1G07070//AT1G08220//AT1G15250//AT1G25260//AT1G31660//RACK1B//AT1G52930//G-H2AX//IMP4//PG2//NRP1//CYCA2;4//AT2G20450//EDA27//ATEXP6//AtXTH32//AT2G37470//AT2G40590//AT2G45710//AT3G07750//HCC1//AT3G10610//AT3G12370//AT3G13230//AT3G16080//AtGRP4//AT3G28900//ATHD2A//AtXTH31//AT3G45930//AT3G46320//ROC2//AT4G12600//AtENODL19//AT4G15770//AT4G22380//ATBRI1//CBB3//AT5G10390//AT5G11240//AT5G11750//AT5G20160//AT5G22100//HTA7//AT5G53070//AT5G59240//AT5G59970//AT5G60670//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8
GO:0009117	nucleotide metabolic process	BP	1.9462612598384e-06	ATPCNA1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G31660//RACK1B//AT1G52930//EMB3108//CYP79B3//HDA13//WDR55//AT2G37690//AT2G39795//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G10610//AT3G15460//RACK1C//ATHD2A//DUT1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G12600//CYP83A1//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G31810//CSDP1//AT5G02050//AT5G08180//AT5G11240//AT5G59240//GR-RBP3
GO:0006753	nucleoside phosphate metabolic process	BP	2.19004394719466e-06	ATPCNA1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G31660//RACK1B//AT1G52930//EMB3108//CYP79B3//HDA13//WDR55//AT2G37690//AT2G39795//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G10610//AT3G15460//RACK1C//ATHD2A//DUT1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G12600//CYP83A1//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G31810//CSDP1//AT5G02050//AT5G08180//AT5G11240//AT5G59240//GR-RBP3
GO:0043412	macromolecule modification	BP	2.33628625219666e-06	ATPCNA1//AT1G16220//AT1G18850//AT1G25260//RPL10B//AT1G32190//RACK1B//AT1G52930//G-H2AX//TIM13//IMP4//ATELF5A-3//ATH8//AHL29//CYCA2;4//AT2G04020//ATPRMT1A//AT2G20450//EDA27//HDA13//ATPCNA2//AT2G32060//AT2G32220//HTA8//AT2G39795//AT2G41890//RPL16A//AT2G44230//cycp3;1//MAP1A//AT2G45710//AT2G46850//AT3G06530//AT3G07750//AT3G10610//BRL3//AT3G15460//AT3G16080//RACK1C//ATPUB29//ATPHB4//AT3G28900//ATHD2A//emb2474//AT3G47370//CYCD3;3//AT3G50230//LPPepsilon1//ROC2//AT3G58700//PSBQ//AT4G10450//AT4G12600//AT4G15640//AT4G15770//RRP41L//ATPRMT11//AT4G30800//AT4G31020//AT4G31810//CYCD5;1//AT5G02050//HD2C//AT5G08180//AT5G15520//AT5G20160//ATPHB3//POLA3//TIM8//AT5G59850//GR-RBP3//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//AT5G65920//AT5G66080//AT5G67200//RLK
GO:0043436	oxoacid metabolic process	BP	2.40090260966934e-06	UGT1//ADS1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//GRI//ASP4//FMO//AT1G71870//ATSOT18//NRP1//GNR1//ATGSTU20//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//PYL2//ATSMO2//ATGSTF7//AT2G31790//AT2G36580//UMAMIT12//ATLEUD1//AT2G44040//ATCB5-C//AK3//ATGSTF11//GDH3//HCC1//AT3G14390//BCAT4//ATSAHH2//CYP71B15//ATBCAT-3//TRP3//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ACS7//AT4G31810//AT4G33905//ATIPS1//SIR//ATNAS1//AtPPa6//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//KAT5//AT5G57890//PDCB1//AT5G62210//ALX8
GO:0006139	nucleobase-containing compound metabolic...	BP	2.44447464359027e-06	ATERF10//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//EMB3108//AAC42//TIM13//IMP4//AT1G68200//BLH11//CYCA2;4//AT2G20450//EDA27//CYP79B3//AT2G24700//HDA13//ATRPAC14//ATPCNA2//AT2G32060//AT2G32220//WDR55//AT2G37690//HTA8//AT2G39795//AT2G42710//RPL16A//ATSPX3//AT2G45710//ATWRKY43//IAA20//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G15460//AT3G16080//RACK1C//ATUNG//AT3G19500//PLT1//AT3G23325//ATIPT7//AtGRP4//ATPHB4//AT3G28900//ATHD2A//emb2474//DUT1//AT3G47370//CYCD3;3//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//ROC2//AT3G58700//IAA30//AT4G10450//AT4G12600//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AT4G18440//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G30180//AT4G30800//AT4G31810//CSDP1//CYCD5;1//AT5G02050//HD2C//AT5G08180//AIL6//AT5G11240//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//TIM8//PTAC15//AT5G59240//AT5G59850//GR-RBP3//AT5G62290//ALX8//AT5G67200
GO:0006082	organic acid metabolic process	BP	2.49265167861566e-06	UGT1//ADS1//FMO//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//CYP79F2//ATSOT17//AT1G21440//GRI//ASP4//FMO//AT1G71870//ATSOT18//NRP1//GNR1//ATGSTU20//CYP79B3//encodes a protein whose sequence is similar to ACC oxidase//PYL2//ATSMO2//ATGSTF7//AT2G31790//AT2G36580//UMAMIT12//ATLEUD1//AT2G44040//ATCB5-C//AK3//ATGSTF11//GDH3//HCC1//AT3G14390//BCAT4//ATSAHH2//CYP71B15//ATBCAT-3//TRP3//IPMI1//APR//BASS5//ATLEUC1//CYP83A1//ACS7//AT4G31810//AT4G33905//ATIPS1//SIR//ATNAS1//AtPPa6//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//KAT5//AT5G57890//PDCB1//AT5G62210//ALX8
GO:0016070	RNA metabolic process	BP	2.78346817654014e-06	ATERF10//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//AT1G18850//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//RACK1B//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//AAC42//TIM13//IMP4//AT1G68200//BLH11//AT2G20450//EDA27//AT2G24700//HDA13//ATRPAC14//AT2G32060//AT2G32220//HTA8//AT2G42710//RPL16A//ATSPX3//AT2G45710//ATWRKY43//IAA20//AT3G06530//AT3G07750//AT3G10610//AT3G12370//AT3G13230//AT3G15460//AT3G16080//RACK1C//AT3G19500//PLT1//AT3G23325//ATIPT7//AtGRP4//ATPHB4//AT3G28900//ATHD2A//emb2474//AT3G47370//BEH1//GATA18//AT3G54390//ROC2//AT3G58700//IAA30//AT4G10450//AT4G12600//AT4G15640//AT4G15770//ATHB-2//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G30800//CSDP1//AT5G02050//HD2C//AT5G08180//AIL6//AT5G11240//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//AT5G23690//LSU2//ATPHB3//POLA3//ATERF-9//mtACP3//TIM8//PTAC15//AT5G59240//AT5G59850//AT5G62290//ALX8//AT5G67200
GO:0009628	response to abiotic stimulus	BP	3.31610546789563e-06	AT1G03220//AT1G03230//RPL10B//ARR3//AT1G63720//AT-EXP1//PG2//NRP1//AHL29//ATPDI6//GNR1//ATGSTU20//ATPIN4//AHB1//AT2G20940//MEL4//ATEXP6//ATGSTF7//AT2G39795//MAP1A//AT2G46170//IAA20//BCAT4//ATSAHH2//AtGRP4//CYP71B15//GLV3//ATPHS2//LPPepsilon1//TRP3//ATPDI1//IAA30//AtENODL19//ATLEUC1//CYP83A1//ATHB-2//ATIRT1//AR192//AT4G30650//AT4G31810//CSDP1//ATBRI1//TAAC//HD2C//TFL-1//SIR//CBB3//CYP75B1//AtPPa6//ATIMD1//AtbZIP3//IMS3//DGR2//HTA7//AT5G38940//ATPHB3//KAT5//AAP6//AT5G57785//GR-RBP3//AT5G62210//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8
GO:0072330	monocarboxylic acid biosynthetic process	BP	3.5059407634415e-06	ADS1//ATSOT17//GRI//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//ATCB5-C//BCAT4//CYP71B15//TRP3//APR//CYP83A1//ACS7//SIR//ATNAS1//AtPPa6//TRA2//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//AT5G62210//ALX8
GO:1901607	alpha-amino acid biosynthetic process	BP	3.64390089938483e-06	encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//ATSOT18//CYP79B3//ATLEUD1//AT2G44040//AK3//AT3G14390//BCAT4//ATSAHH2//TRP3//IPMI1//APR//CYP83A1//ACS7//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2//AT5G57890
GO:0016043	cellular component organization	BP	4.06269353750739e-06	AT1G04770//UGT1//ATPCNA1//AT1G08220//AT1G18850//ATEXP11//AT1G26470//AT-EXP10//RACK1B//AT1G50400//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//TIM13//ATELF5A-3//AT-EXP1//ATH8//PG2//NRP1//CYCA2;4//ATPIN4//ATEXP15//AT2G18410//ATPRMT1A//EDA27//CYP79B3//ATEXP6//ATPCNA2//WDR55//AT2G37400//AT2G37470//HTA8//ATEXP4//AT2G39795//AT2G41480//ATYLMG1-1//AT3G07750//HCC1//AT3G10610//AT3G15680//ATIPT7//ATSAHH2//AtGRP4//CYP71B15//AT3G45930//AT3G46320//emb2474//AT3G49320//AtDWF4//TRP3//UMAMIT29//AtENODL19//AT4G15770//ATHB-2//AR192//RRP41L//ATEXPB3//ARAC7//ATPRMT11//AT4G30800//AT4G31810//CSDP1//AT4G36680//ATBRI1//SIR//ATNAS1//CBB3//AT5G08180//AtPPa6//AT5G10390//AT5G15750//LSU2//AtENODL13//HTA7//AT5G38890//ATPHB3//POLA3//TIM8//PTAC15//AT5G59850//AT5G59970//GR-RBP3//PDCB1//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G67200
GO:0044260	cellular macromolecule metabolic process	BP	4.72388359925843e-06	ATERF10//AT1G07070//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//AT1G15250//AT1G16220//AT1G18850//AT1G23100//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//AAC42//TIM13//IMP4//AT1G68200//ATELF5A-3//ATH8//PG2//BLH11//AHL29//ATPDI6//ATGSTU20//CYCA2;4//ATEXP15//AT2G04020//AT2G09990//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//MEL4//AT2G24700//HDA13//ATRPAC14//ATPCNA2//AT2G32060//AT2G32220//AtXTH32//AT2G37600//HTA8//AT2G39795//AT2G40590//AT2G41890//AT2G42710//RPL16A//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//AT2G46850//IAA20//ATGSTF11//AT3G06530//AT3G07750//AT3G09680//AT3G10610//AT3G12370//AT3G13230//BRL3//AT3G15460//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//PLT1//AT3G23325//ATIPT7//AtGRP4//ATPHB4//AT3G28900//AT3G43980//ATHD2A//AtXTH31//emb2474//DUT1//ATPHS2//AT3G47370//CYCD3;3//AT3G50230//BEH1//GATA18//LPPepsilon1//AT3G54390//ATPDI1//UBC14//ROC2//AT3G58700//IAA30//PSBQ//AT4G10450//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CSDP1//CYCD5;1//TAAC//AT5G02050//HD2C//AT5G08180//AT5G09500//AIL6//AT5G11240//AT5G11750//AT5G12110//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//AT5G23690//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//ATXTH20//TIM8//AT5G53070//PTAC15//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G65920//AT5G66080//AT5G67200//RLK
GO:0018130	heterocycle biosynthetic process	BP	5.50538549881248e-06	ATERF10//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//AT1G26470//ATERF12//NRPA2//AT1G31660//RACK1B//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//ARR3//EMB3108//AAC42//CYP735A2//AT1G68200//ATSOT18//BLH11//ATGSTU20//CYP79B3//AT2G24700//HDA13//ATRPAC14//ATPCNA2//ATGSTF7//WDR55//AT2G37690//AT2G39795//AT2G42710//ATLEUD1//ATSPX3//ATWRKY43//ATCB5-C//IAA20//AT3G06530//ATYLMG1-1//AT3G10610//AT3G12370//AT3G15460//RACK1C//AT3G19500//BCAT4//PLT1//CYP71B15//ATHD2A//BEH1//GATA18//AT3G54390//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//TRP3//ATPURM//IAA30//APR//AT4G12600//CYP83A1//ATHB-2//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G30180//AT4G31810//CSDP1//AT5G02050//HD2C//SIR//ATNAS1//AT5G08180//AtPPa6//AIL6//AT5G11240//LEP//AtbZIP3//AtMYB56//IMS3//IMS2//LSU2//POLA3//ATERF-9//PTAC15//AT5G57890//AT5G59240//GR-RBP3//ALX8//AT5G67200
GO:0008652	cellular amino acid biosynthetic process	BP	5.64471328756419e-06	encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//ATSOT18//CYP79B3//ATLEUD1//AT2G44040//AK3//AT3G14390//BCAT4//ATSAHH2//TRP3//IPMI1//APR//ATLEUC1//CYP83A1//ACS7//ATIPS1//SIR//AtPPa6//ATIMD1//IMS3//IMS2//AT5G57890//PDCB1
GO:0043170	macromolecule metabolic process	BP	5.84248794841881e-06	AT1G03220//AT1G03230//ATERF10//AT1G07070//ATPCNA1//encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.//AT1G15250//AT1G16220//AT1G18850//AT1G20380//AT1G23100//AT1G25260//AT1G26470//RPL10B//ATERF12//NRPA2//AT1G31660//AT1G32190//RACK1B//AT1G50400//PLT2//AtWIP5//AT1G52930//Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.//G-H2AX//ARR3//AAC42//TIM13//IMP4//AT1G68200//ATELF5A-3//ATH8//PG2//BLH11//AHL29//ATPDI6//ATGSTU20//CYCA2;4//ATPIN4//ATEXP15//AT2G04020//RGF3//AT2G09990//ATPRMT1A//AT2G19750//AT2G20450//EDA27//AT2G20940//MEL4//AT2G24700//HDA13//ATRPAC14//ATPCNA2//AT2G32060//AT2G32220//AtXTH32//AT2G37600//HTA8//AT2G39795//AT2G40590//AT2G41890//AT2G42710//RPL16A//AT2G44230//cycp3;1//ATSPX3//MAP1A//AT2G45710//ATWRKY43//AT2G46850//IAA20//ATGSTF11//AT3G06530//AT3G07750//AT3G09680//AT3G10610//AT3G12370//AT3G13230//BRL3//AT3G15460//AT3G16080//JAL30//RACK1C//ATUNG//ATPUB29//AT3G19500//PLT1//AT3G23325//ATIPT7//AtGRP4//ATPHB4//AT3G28900//AT3G43980//ATHD2A//AtXTH31//emb2474//DUT1//ATPHS2//AT3G47370//CYCD3;3//AT3G50230//BEH1//GATA18//LPPepsilon1//AT3G54390//ATPDI1//UBC14//ROC2//AT3G58700//AT3G61820//IAA30//PSBQ//AT4G10450//AT4G12600//ATLEUC1//CYP83A1//AT4G15640//AT4G15770//ATHB-2//AR192//RRP41L//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//ATPRMT11//AT4G30180//AT4G30800//AT4G31020//AT4G31810//CSDP1//CYCD5;1//ATBRI1//TAAC//AT5G02050//HD2C//CBB3//AT5G07030//AT5G08180//AT5G09500//AIL6//AT5G11240//AT5G11750//AT5G12110//LEP//AT5G15520//AtbZIP3//AtMYB56//AT5G20160//AT5G22100//AT5G23690//LSU2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//AT5G39850//ATPHB3//POLA3//ATERF-9//mtACP3//ATXTH20//TIM8//AT5G53070//PTAC15//AT5G59240//AT5G59850//AT5G60670//GR-RBP3//AT5G62290//Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein.  DOMINO1 is located in the nucleus.  Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm.  DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.//ALX8//AT5G65920//AT5G66080//AT5G67200//RLK
GO:0016053	organic acid biosynthetic process	BP	5.88372041636625e-06	ADS1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//GRI//ASP4//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//AT2G44040//ATCB5-C//AK3//AT3G14390//BCAT4//ATSAHH2//CYP71B15//TRP3//IPMI1//APR//ATLEUC1//CYP83A1//ACS7//ATIPS1//SIR//ATNAS1//AtPPa6//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//AT5G57890//PDCB1//AT5G62210//ALX8
GO:0046394	carboxylic acid biosynthetic process	BP	5.88372041636625e-06	ADS1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//ATSOT17//GRI//ASP4//ATSOT18//ATGSTU20//CYP79B3//ATSMO2//ATGSTF7//ATLEUD1//AT2G44040//ATCB5-C//AK3//AT3G14390//BCAT4//ATSAHH2//CYP71B15//TRP3//IPMI1//APR//ATLEUC1//CYP83A1//ACS7//ATIPS1//SIR//ATNAS1//AtPPa6//TRA2//ATIMD1//IMS3//IMS2//encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)//mtACP3//AT5G57890//PDCB1//AT5G62210//ALX8
GO:0009825	multidimensional cell growth	BP	6.38316247871769e-06	ATEXP11//AT-EXP10//PG2//ATPIN4//ATEXP15//ATEXP6//ATEXP4//ATBRI1//CBB3
GO:0055086	nucleobase-containing small molecule met...	BP	8.80883913603132e-06	ATPCNA1//encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis//AT1G31660//RACK1B//AT1G52930//EMB3108//CYP79B3//HDA13//WDR55//AT2G37690//AT2G39795//ATGSTF11//AT3G06530//ATYLMG1-1//AT3G10610//AT3G15460//RACK1C//ATHD2A//DUT1//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G12600//CYP83A1//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G29690//AT4G31810//CSDP1//AT5G02050//AT5G08180//AT5G11240//AT5G59240//GR-RBP3
GO:0009259	ribonucleotide metabolic process	BP	9.85925992037179e-06	AT1G31660//RACK1B//AT1G52930//EMB3108//WDR55//AT2G37690//AT2G39795//AT3G06530//ATYLMG1-1//AT3G15460//RACK1C//ATHD2A//encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis//ATPURM//AT4G18440//AR192//This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase//AT4G31810//AT5G02050//AT5G11240//GR-RBP3
GO:0009828	plant-type cell wall loosening	BP	1.01266549387254e-05	ATEXP11//AT-EXP10//AT-EXP1//ATEXP15//ATEXP6//ATEXP4//ATEXPB3