GOID	TERM	ONTOLOGY	pValue	Genes
GO:0055114	oxidation-reduction process	BP	0.000286092264335271	MIOX1//FMO//ATGA2OX1//AT2G21850//encodes a protein whose sequence is similar to ACC oxidase//AT3G46500//CYP706A6//FdC1//SDH3-2//putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).//AT5G21100//CcdA//PSBD//PSBB//NDHF
GO:0022900	electron transport chain	BP	0.000584097111536033	FdC1//SDH3-2//PSBD//PSBB//NDHF
GO:0043455	regulation of secondary metabolic proces...	BP	0.00315187692669936	encodes a protein whose sequence is similar to ACC oxidase//AtMYB28
GO:0046189	phenol-containing compound biosynthetic ...	BP	0.00404439174102575	CXC750//AtDIR5//AT5G22530
GO:0006949	syncytium formation	BP	0.00465532612090472	MIOX1//ATEXP15
GO:0010675	regulation of cellular carbohydrate meta...	BP	0.00521673299931403	encodes a protein whose sequence is similar to ACC oxidase//AtMYB28
GO:0043255	regulation of carbohydrate biosynthetic ...	BP	0.00521673299931403	encodes a protein whose sequence is similar to ACC oxidase//AtMYB28
GO:1901657	glycosyl compound metabolic process	BP	0.00632541364879416	FMO//encodes a protein whose sequence is similar to ACC oxidase//SDH3-2//AT5G44020//AtMYB28//NDHF
GO:0044550	secondary metabolite biosynthetic proces...	BP	0.00686548132816348	FMO//AtDIR5//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0018958	phenol-containing compound metabolic pro...	BP	0.00715943255632862	CXC750//AtDIR5//AT5G22530
GO:0006119	oxidative phosphorylation	BP	0.00775373108603821	SDH3-2//NDHF
GO:0042773	ATP synthesis coupled electron transport	BP	0.00775373108603821	SDH3-2//NDHF
GO:0016144	S-glycoside biosynthetic process	BP	0.00865021052435389	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0019758	glycosinolate biosynthetic process	BP	0.00865021052435389	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0019761	glucosinolate biosynthetic process	BP	0.00865021052435389	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0009556	microsporogenesis	BP	0.00919196239128546	SPL8//ATWRKY19
GO:0048236	plant-type spore development	BP	0.0115534758972258	SPL8//ATWRKY19
GO:0006109	regulation of carbohydrate metabolic pro...	BP	0.0132598834697466	encodes a protein whose sequence is similar to ACC oxidase//AtMYB28
GO:0016143	S-glycoside metabolic process	BP	0.0139212372871464	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0019757	glycosinolate metabolic process	BP	0.0139212372871464	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0019760	glucosinolate metabolic process	BP	0.0139212372871464	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0070838	divalent metal ion transport	BP	0.0139212372871464	ZIP7//GAMMA-TIP2//BGAL2//AT5G44020
GO:0022904	respiratory electron transport chain	BP	0.0141516851473405	SDH3-2//NDHF
GO:0072511	divalent inorganic cation transport	BP	0.0142280450422226	ZIP7//GAMMA-TIP2//BGAL2//AT5G44020
GO:1901617	organic hydroxy compound biosynthetic pr...	BP	0.0155581334722945	CXC750//AtDIR5//AT2G21860//AT5G21100//AT5G22530//AT5G56040
GO:0006091	generation of precursor metabolites and ...	BP	0.0155708534753842	CXC750//GAMMA-TIP2//FdC1//SDH3-2//PSBD//PSAA//PSBB//NDHF
GO:0044275	cellular carbohydrate catabolic process	BP	0.0160108121170152	MIOX1//BGAL2
GO:0030001	metal ion transport	BP	0.0198880344084079	ZIP7//GAMMA-TIP2//BGAL2//NAKR3//GORK//AT5G44020
GO:1901615	organic hydroxy compound metabolic proce...	BP	0.0232137655442139	MIOX1//CXC750//AtDIR5//AT2G21860//AT5G21100//AT5G22530//AT5G56040
GO:0009617	response to bacterium	BP	0.0233086051689578	CXC750//BBX14//GAMMA-TIP2//AT5G56040//AtMYB28
GO:0006952	defense response	BP	0.0236333564408021	CXC750//AT1G51820//AtDIR5//BBX14//GAMMA-TIP2//ATWRKY19//AT5G22530//AT5G46510//AtMYB28
GO:0019748	secondary metabolic process	BP	0.0252691164656377	FMO//AtDIR5//encodes a protein whose sequence is similar to ACC oxidase//putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).//AT5G44020//AtMYB28
GO:0009684	indoleacetic acid biosynthetic process	BP	0.0255588722593578	FMO//AT5G44020
GO:0009683	indoleacetic acid metabolic process	BP	0.0267328701153402	FMO//AT5G44020
GO:0009697	salicylic acid biosynthetic process	BP	0.0316409176886466	CXC750//AT5G22530
GO:1901659	glycosyl compound biosynthetic process	BP	0.0321771968032911	FMO//encodes a protein whose sequence is similar to ACC oxidase//AT5G44020//AtMYB28
GO:0009409	response to cold	BP	0.0322309029940395	CXC750//ZIP7//EMB1611//AtCor6.6//GORK//COR78
GO:0009753	response to jasmonic acid	BP	0.0326904169496032	BBX14//CPL3//GORK//AtMYB28
GO:0030003	cellular cation homeostasis	BP	0.0333754843777197	GAMMA-TIP2//BGAL2//AT5G44020
GO:0006334	nucleosome assembly	BP	0.0342180850229174	H2B//AT5G59690
GO:0034728	nucleosome organization	BP	0.0342180850229174	H2B//AT5G59690
GO:0065004	protein-DNA complex assembly	BP	0.0368742960577881	H2B//AT5G59690
GO:0071824	protein-DNA complex subunit organization	BP	0.0368742960577881	H2B//AT5G59690
GO:0006873	cellular ion homeostasis	BP	0.0371219676205612	GAMMA-TIP2//BGAL2//AT5G44020
GO:0006354	DNA-templated transcription, elongation	BP	0.0378961892857074	PSBD//PSAA//PSBB
GO:0009851	auxin biosynthetic process	BP	0.0382313424843357	FMO//AT5G44020
GO:0009696	salicylic acid metabolic process	BP	0.0410019388726472	CXC750//AT5G22530
GO:0006812	cation transport	BP	0.0418281549835803	AT1G51820//ZIP7//GAMMA-TIP2//BGAL2//NAKR3//GORK//AT5G44020
GO:0055082	cellular chemical homeostasis	BP	0.0418909047647234	GAMMA-TIP2//BGAL2//AT5G44020
GO:0019725	cellular homeostasis	BP	0.0427540094560639	GAMMA-TIP2//BGAL2//AT5G44020//CcdA
GO:0042435	indole-containing compound biosynthetic ...	BP	0.0438460654000704	FMO//AT5G44020
GO:0048653	anther development	BP	0.0467615878320738	SPL8//AT5G56040
GO:0031497	chromatin assembly	BP	0.0482454664415998	H2B//AT5G59690
GO:0016126	sterol biosynthetic process	BP	0.0487056768452335	AT2G21860//AT5G21100//AT5G56040
GO:0006323	DNA packaging	BP	0.0527984814321016	H2B//AT5G59690
GO:0016125	sterol metabolic process	BP	0.0532246070922543	AT2G21860//AT5G21100//AT5G56040
GO:0010089	xylem development	BP	0.0543491017719015	ATEXP15//ATXTH20
GO:0042430	indole-containing compound metabolic pro...	BP	0.0559157802143751	FMO//AT5G44020
GO:0009266	response to temperature stimulus	BP	0.05809950534196	CXC750//ZIP7//EMB1611//GAMMA-TIP2//AtCor6.6//GORK//COR78
GO:0055080	cation homeostasis	BP	0.0589051387412592	GAMMA-TIP2//BGAL2//AT5G44020
GO:0009772	photosynthetic electron transport in pho...	BP	0.0590296348450745	G002
GO:0042537	benzene-containing compound metabolic pr...	BP	0.0590963288994421	CXC750//AT5G22530
GO:0010876	lipid localization	BP	0.0598788083510067	EMB1611//AT2G45180//Encodes a Protease inhibitor/seed storage/LTP family protein
GO:0009850	auxin metabolic process	BP	0.0623381856449838	FMO//AT5G44020
GO:0006829	zinc II ion transport	BP	0.064739839594554	G040
GO:0046271	phenylpropanoid catabolic process	BP	0.064739839594554	G010
GO:0046274	lignin catabolic process	BP	0.064739839594554	G010
GO:0046034	ATP metabolic process	BP	0.0673117656802939	SDH3-2//NDHF
GO:0010948	negative regulation of cell cycle proces...	BP	0.070415822968279	G347
GO:0050801	ion homeostasis	BP	0.0732159650559417	GAMMA-TIP2//BGAL2//AT5G44020
GO:0009144	purine nucleoside triphosphate metabolic...	BP	0.0758811274096127	SDH3-2//NDHF
GO:0009199	ribonucleoside triphosphate metabolic pr...	BP	0.0758811274096127	SDH3-2//NDHF
GO:0009205	purine ribonucleoside triphosphate metab...	BP	0.0758811274096127	SDH3-2//NDHF
GO:0042775	mitochondrial ATP synthesis coupled elec...	BP	0.0760577874749573	G322
GO:0042446	hormone biosynthetic process	BP	0.0764681012094909	FMO//AT5G44020//AT5G56040
GO:0006694	steroid biosynthetic process	BP	0.078671387430306	AT2G21860//AT5G21100//AT5G56040
GO:0009141	nucleoside triphosphate metabolic proces...	BP	0.0794016597828	SDH3-2//NDHF
GO:0009313	oligosaccharide catabolic process	BP	0.0816659344402082	G528
GO:0009831	plant-type cell wall modification involv...	BP	0.0816659344402082	G030
GO:0046352	disaccharide catabolic process	BP	0.0816659344402082	G528
GO:0051053	negative regulation of DNA metabolic pro...	BP	0.0816659344402082	G347
GO:0009814	defense response, incompatible interacti...	BP	0.0820283277792323	CXC750//BBX14//AT5G22530
GO:0009767	photosynthetic electron transport chain	BP	0.0829725989446709	PSBD//PSBB
GO:0010087	phloem or xylem histogenesis	BP	0.0829725989446709	ATEXP15//ATXTH20
GO:0034754	cellular hormone metabolic process	BP	0.0847764394188392	FMO//AT5G44020
GO:0006869	lipid transport	BP	0.0865922477204501	AT2G45180//Encodes a Protease inhibitor/seed storage/LTP family protein
GO:0046174	polyol catabolic process	BP	0.0872404640133765	G145
GO:0009751	response to salicylic acid	BP	0.087759257532547	BBX14//CPL3//AtMYB28
GO:0019344	cysteine biosynthetic process	BP	0.087759257532547	FMO//GAMMA-TIP2//AT5G44020
GO:0045333	cellular respiration	BP	0.0884198168152284	SDH3-2//NDHF
GO:0044710	single-organism metabolic process	BP	0.0888229358088129	AT1G13650//MIOX1//CXC750//AT1G51820//FMO//AtDIR5//BBX14//ATGA2OX1//AT2G21850//AT2G21860//encodes a protein whose sequence is similar to ACC oxidase//EMB1611//AT2G45180//GAMMA-TIP2//AT3G46500//BGAL2//AT4G01130//CYP706A6//FdC1//AT4G28780//SDH3-2//putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).//AT5G21100//AT5G22530//AT5G44020//CcdA//AT5G56040//AtMYB28//AT5G66150//PSBD//PSBB//NDHF
GO:0006534	cysteine metabolic process	BP	0.091277636730726	FMO//GAMMA-TIP2//AT5G44020
GO:0071103	DNA conformation change	BP	0.0921094192992955	H2B//AT5G59690
GO:0017004	cytochrome complex assembly	BP	0.0927815751743214	G542
GO:0042547	cell wall modification involved in multi...	BP	0.0927815751743214	G030
GO:0046164	alcohol catabolic process	BP	0.0927815751743214	G145
GO:0015979	photosynthesis	BP	0.0930894894840467	CXC750//PSBD//PSAA//PSBB//NDHF
GO:0008202	steroid metabolic process	BP	0.0936557889020597	AT2G21860//AT5G21100//AT5G56040
GO:0002376	immune system process	BP	0.0938461114064181	CXC750//AT1G51820//BBX14//AT5G22530//AtMYB28
GO:0009126	purine nucleoside monophosphate metaboli...	BP	0.0939710486233656	SDH3-2//NDHF