GOID TERM ONTOLOGY pValue Genes GO:0006914 autophagy BP 0.000182528185841717 ATG8F//ATATG3//AT5G38895//AT1G72940//AT2G25190//ATATG8E GO:0048878 chemical homeostasis BP 0.00393872308455548 ATPAP26//ATBZIP9//ATCNGC4//At-NEET//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0050801 ion homeostasis BP 0.00566201900116443 ATPAP26//ATCNGC4//At-NEET//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0009725 response to hormone BP 0.00594575117395288 ATGOS12//AT4G15430//ATMYB59//ALNS//SLY2//AT5G38895//SAUR23//AtTIR1//AT4G38840//BT5//PYR1//CYP71B22//ATCYP38//ATNPR1//AT1G29450//AT1G80440//AT1G49010//AtcFBP//PYL9//ATBPC4//AtHB23//HBI1//AtEIL1//AtRTE1 GO:0040008 regulation of growth BP 0.00641842156580001 LNG1//ALNS//ATSPS4F//AT1G22060//DDL//LNG2//PRK5//AT2G22420 GO:0055082 cellular chemical homeostasis BP 0.00708677953367641 ATBZIP9//ATCNGC4//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0044275 cellular carbohydrate catabolic process BP 0.00942092697005172 GLI1//AMY3//AtcFBP GO:0050896 response to stimulus BP 0.0108977193051408 ATGOS12//AT4G15430//HEMC//DIN10//LNG1//ATPAP26//AT5G27950//ATBZIP9//AT5G62200//ATMYB59//ROC7//ALNS//PSL4//ATCNGC4//AT5G51440//AT5G49750//AGL80//SLY2//NDH18//AT5G38895//AT5G37670//AT5G37980//G6PD1//LCB2//SAUR23//CIPK5//AtTIR1//AT3G62550//RPP13//AT3G46710//AT4G38840//AT4G37710//BT5//AT4G34220//scpl29//AT4G25260//PYR1//ATSPS4F//ALN//DRT100//ATGLR3.3//AT3G27150//DDL//ATNCED6//CYP71B22//ATTLP9//ATCYP38//PIP1;3//ATNPR1//AT1G29450//AtRABA6a//GLI1//AT1G80440//BGLU36//AT1G49010//AtcFBP//PYL9//PRK5//AtJ8//AT1G72940//ATBPC4//AtHB23//VHA-A2//AT2G22420//CLE26//AT2G20230//HBI1//AtRLP21//ACX5//ATATG8E//AtEIL1//AtRTE1//NET4B//AtRLP22 GO:0009719 response to endogenous stimulus BP 0.0133200629634487 ATGOS12//AT4G15430//ATMYB59//ALNS//SLY2//AT5G38895//SAUR23//AtTIR1//AT4G38840//BT5//PYR1//ATGLR3.3//CYP71B22//ATCYP38//ATNPR1//AT1G29450//AT1G80440//AT1G49010//AtcFBP//PYL9//ATBPC4//AtHB23//HBI1//AtEIL1//AtRTE1 GO:0048638 regulation of developmental growth BP 0.013876842617654 LNG1//ATSPS4F//AT1G22060//DDL//LNG2//PRK5//AT2G22420 GO:0055080 cation homeostasis BP 0.013876842617654 ATCNGC4//At-NEET//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0007154 cell communication BP 0.0139823551408062 RALFL31//ALNS//AT5G49750//AGL80//SLY2//AT5G38895//CIPK5//AtTIR1//AT4G34220//scpl29//PYR1//ALN//DRT100//AT3G27150//DDL//CYP71B22//ATCYP38//PIP1;3//ATNPR1//AtRABA6a//AT1G80440//PYL9//AT1G11410//PRK5//AT1G72940//VHA-A2//CLE26//AtRLP21//ATATG8E//AtEIL1//AtRTE1//AtRLP22 GO:0001558 regulation of cell growth BP 0.0154905786155751 LNG1//ALNS//LNG2//PRK5 GO:0005985 sucrose metabolic process BP 0.0181632517404319 ATSPS4F//AtcFBP GO:0030003 cellular cation homeostasis BP 0.0187449983637056 ATCNGC4//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0006098 pentose-phosphate shunt BP 0.0192863456856982 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0051156 glucose 6-phosphate metabolic process BP 0.0192863456856982 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0009733 response to auxin BP 0.0198886394376599 AT4G15430//ATMYB59//AT5G38895//SAUR23//AtTIR1//AT4G38840//BT5//AT1G29450//AT1G49010 GO:0006873 cellular ion homeostasis BP 0.0203151341879019 ATCNGC4//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0006739 NADP metabolic process BP 0.0206644188782207 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0046496 nicotinamide nucleotide metabolic proces... BP 0.0236238982320011 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0009873 ethylene-activated signaling pathway BP 0.023960758312984 AT5G38895//CYP71B22//AtEIL1//AtRTE1 GO:0019362 pyridine nucleotide metabolic process BP 0.0252081436830478 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0019693 ribose phosphate metabolic process BP 0.025308136604837 HEMC//AT5G28050//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2//VHA-A2 GO:0051716 cellular response to stimulus BP 0.0278771156870321 AT5G27950//ATBZIP9//ROC7//ALNS//ATCNGC4//AT5G51440//AT5G49750//AGL80//SLY2//AT5G38895//CIPK5//AtTIR1//RPP13//AT4G37710//AT4G34220//scpl29//PYR1//ALN//DRT100//ATGLR3.3//AT3G27150//DDL//CYP71B22//ATCYP38//PIP1;3//ATNPR1//AtRABA6a//AT1G80440//PYL9//PRK5//AT1G72940//VHA-A2//CLE26//AtRLP21//ATATG8E//AtEIL1//AtRTE1//AtRLP22 GO:0072524 pyridine-containing compound metabolic p... BP 0.0285923605543537 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0009723 response to ethylene BP 0.0322725237242002 AT4G15430//ATMYB59//AT5G38895//CYP71B22//ATBPC4//AtEIL1//AtRTE1 GO:0009739 response to gibberellin BP 0.0337108918042184 AT4G15430//ATMYB59//SLY2//AT1G49010//AtHB23 GO:0000398 mRNA splicing, via spliceosome BP 0.033981698898024 DDL//EMB2769//OTP51 GO:0071495 cellular response to endogenous stimulus BP 0.0347554007405314 ALNS//SLY2//AT5G38895//AtTIR1//PYR1//ATGLR3.3//CYP71B22//ATCYP38//ATNPR1//AT1G80440//PYL9//AtEIL1//AtRTE1 GO:0071369 cellular response to ethylene stimulus BP 0.0347747862605986 AT5G38895//CYP71B22//AtEIL1//AtRTE1 GO:0044700 single organism signaling BP 0.0362439200047154 RALFL31//ALNS//AT5G49750//AGL80//SLY2//AT5G38895//CIPK5//AtTIR1//AT4G34220//scpl29//PYR1//DRT100//DDL//CYP71B22//ATCYP38//ATNPR1//AtRABA6a//AT1G80440//PYL9//PRK5//AT1G72940//CLE26//AtRLP21//AtEIL1//AtRTE1//AtRLP22 GO:0023052 signaling BP 0.0366529045237566 RALFL31//ALNS//AT5G49750//AGL80//SLY2//AT5G38895//CIPK5//AtTIR1//AT4G34220//scpl29//PYR1//DRT100//DDL//CYP71B22//ATCYP38//ATNPR1//AtRABA6a//AT1G80440//PYL9//PRK5//AT1G72940//CLE26//AtRLP21//AtEIL1//AtRTE1//AtRLP22 GO:0015996 chlorophyll catabolic process BP 0.0388750521555613 AT5G65480//PGRL1B//DEG1 GO:0065007 biological regulation BP 0.0396732128705523 HAT1//AT4G15430//FTRA2//HEMC//LNG1//ATPAP26//AT5G27950//ATBZIP9//ATMYB59//ALNS//ATCNGC4//AT5G52780//At-NEET//AT5G49750//AGL80//SLY2//NDH18//AT5G38895//G6PD1//LCB2//CIPK5//AtTIR1//PDE312//AT3G46770//BT5//AT4G34220//scpl29//PYR1//ATSPS4F//AT1G22060//DRT100//ATRL6//ATGLR3.3//AT3G27150//DDL//CYP71B22//CCL//AT3G15690//ATMES17//ATTLP9//LNG2//ATCYP38//AtMYB106//PIP1;3//ATNPR1//AtRABA6a//AT1G80440//BBX27//PYL9//PRK5//ATHB18//AT1G72940//ATBPC4//AtHB23//VHA-A2//AT2G22420//CLE26//AT2G20230//HBI1//AtRLP21//AtEIL1//AtRTE1//AT2G38300//AtRLP22 GO:0007165 signal transduction BP 0.0406131896051038 ALNS//AT5G49750//AGL80//SLY2//AT5G38895//CIPK5//AtTIR1//AT4G34220//scpl29//PYR1//DRT100//DDL//CYP71B22//ATCYP38//ATNPR1//AtRABA6a//AT1G80440//PYL9//PRK5//AT1G72940//CLE26//AtRLP21//AtEIL1//AtRTE1//AtRLP22 GO:0046149 pigment catabolic process BP 0.0414488780771084 AT5G65480//PGRL1B//DEG1 GO:0046520 sphingoid biosynthetic process BP 0.0416482494786217 LCB2//AT2G18770 GO:0009966 regulation of signal transduction BP 0.043978407589228 SLY2//ATNPR1//AT1G80440//AtRTE1 GO:0044248 cellular catabolic process BP 0.0441171763773212 ATG8F//AT5G65480//ATATG3//AT5G38895//AtTIR1//AT3G49490//PGRL1B//UBQ11//ALN//DDL//AT3G24360//DEG1//GLI1//UBC5//AMY3//AtcFBP//ATCUL2//AT1G72940//AT2G25190//ACX5//ATATG8E GO:0010646 regulation of cell communication BP 0.0459680252700489 SLY2//ATNPR1//AT1G80440//AtRTE1 GO:0023051 regulation of signaling BP 0.0459680252700489 SLY2//ATNPR1//AT1G80440//AtRTE1 GO:0046519 sphingoid metabolic process BP 0.0462719958919538 LCB2//AT2G18770 GO:0042592 homeostatic process BP 0.0487339175009472 ATPAP26//ATBZIP9//ATCNGC4//At-NEET//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0006787 porphyrin-containing compound catabolic ... BP 0.0496700577356333 AT5G65480//PGRL1B//DEG1 GO:0033015 tetrapyrrole catabolic process BP 0.0496700577356333 AT5G65480//PGRL1B//DEG1 GO:0051510 regulation of unidimensional cell growth BP 0.0496700577356333 LNG1//LNG2//PRK5 GO:0009755 hormone-mediated signaling pathway BP 0.0500315302138252 ALNS//SLY2//AT5G38895//AtTIR1//PYR1//CYP71B22//ATCYP38//ATNPR1//AT1G80440//PYL9//AtEIL1//AtRTE1 GO:0000375 RNA splicing, via transesterification re... BP 0.0525741605827324 DDL//EMB2769//OTP51 GO:0000377 RNA splicing, via transesterification re... BP 0.0525741605827324 DDL//EMB2769//OTP51 GO:0051187 cofactor catabolic process BP 0.0525741605827324 AT5G65480//PGRL1B//DEG1 GO:0033993 response to lipid BP 0.0535090375968339 ATGOS12//AT4G15430//ATMYB59//ALNS//SLY2//AT5G38895//PYR1//ATNPR1//AT1G49010//AtcFBP//PYL9//AtHB23 GO:0022604 regulation of cell morphogenesis BP 0.0555585395856295 LNG1//LNG2//PRK5 GO:0030148 sphingolipid biosynthetic process BP 0.0560460780811575 LCB2//AT2G18770 GO:0046351 disaccharide biosynthetic process BP 0.0560460780811575 TPPH//AtcFBP GO:0000160 phosphorelay signal transduction system BP 0.0566573684307305 AT5G38895//CYP71B22//AtEIL1//AtRTE1 GO:0098771 inorganic ion homeostasis BP 0.0589425062543252 ATPAP26//At-NEET//ATGLR3.3//VHA-A2 GO:0006733 oxidoreduction coenzyme metabolic proces... BP 0.0595742329785815 HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2 GO:0006071 glycerol metabolic process BP 0.0611796286026203 GLI1//AT1G18460 GO:0019400 alditol metabolic process BP 0.0611796286026203 GLI1//AT1G18460 GO:0019725 cellular homeostasis BP 0.0624643267250335 ATBZIP9//ATCNGC4//NDH18//ATGLR3.3//CCL//AT3G15690//VHA-A2 GO:0015979 photosynthesis BP 0.0628098484766876 FTRA2//HEMC//AT5G52780//G6PD1//PGRL1B//DEG1//ATCYP38//AtcFBP//PnsL2//OTP51 GO:0032870 cellular response to hormone stimulus BP 0.0639097494490102 ALNS//SLY2//AT5G38895//AtTIR1//PYR1//CYP71B22//ATCYP38//ATNPR1//AT1G80440//PYL9//AtEIL1//AtRTE1 GO:0044262 cellular carbohydrate metabolic process BP 0.0645313433162338 ATGOS12//PSL4//AT5G50330//AT3G49490//AT3G46220//TPPH//XTH7//ATSPS4F//AtRABA6a//GLI1//AMY3//AtcFBP//AT1G18460 GO:0031668 cellular response to extracellular stimu... BP 0.0669580708892568 ALNS//AtTIR1//ALN//AT3G27150//PIP1;3//VHA-A2//ATATG8E GO:0071496 cellular response to external stimulus BP 0.0684983658471403 ALNS//AtTIR1//ALN//AT3G27150//PIP1;3//VHA-A2//ATATG8E GO:0006397 mRNA processing BP 0.0716468869178845 DDL//EMB2769//OTP51 GO:0006732 coenzyme metabolic process BP 0.0777143892940732 FTRA2//HEMC//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PIP1;3//PnsL2 GO:0009991 response to extracellular stimulus BP 0.0815843807580594 ALNS//AtTIR1//ALN//AT3G27150//PIP1;3//VHA-A2//ATATG8E GO:0019684 photosynthesis, light reaction BP 0.0816927976099342 FTRA2//HEMC//AT5G52780//PGRL1B//DEG1//ATCYP38//PnsL2//OTP51 GO:0072503 cellular divalent inorganic cation homeo... BP 0.0831731271352614 ATGLR3.3//VHA-A2 GO:0010075 regulation of meristem growth BP 0.0872253336472913 LNG1//ATSPS4F//AT1G22060//AT2G22420 GO:0035266 meristem growth BP 0.0900734415838496 LNG1//ATSPS4F//AT1G22060//AT2G22420 GO:0009312 oligosaccharide biosynthetic process BP 0.0949425043860496 TPPH//AtcFBP GO:0010073 meristem maintenance BP 0.0965116020545558 HAT1//LNG1//ATSPS4F//AT1G22060//AT2G22420 GO:0009737 response to abscisic acid BP 0.0981682159060245 ATGOS12//AT4G15430//ATMYB59//AT5G38895//PYR1//ATNPR1//AtcFBP//PYL9 GO:0009117 nucleotide metabolic process BP 0.0986586186253355 HEMC//AT5G28050//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2//VHA-A2 GO:0006457 protein folding BP 0.0997532610656876 ROC7//AT5G51440//AT5G37670//CRRJ//ATCYP38//AtJ8 GO:0006753 nucleoside phosphate metabolic process BP 0.101894662704934 HEMC//AT5G28050//AT5G52780//At-NEET//G6PD1//DEG1//ATCYP38//PnsL2//VHA-A2 GO:0051186 cofactor metabolic process BP 0.105215121952555 FTRA2//HEMC//AT5G65480//AT5G52780//At-NEET//G6PD1//PGRL1B//DEG1//ATCYP38//PIP1;3//PnsL2 GO:0000272 polysaccharide catabolic process BP 0.107153926187288 AMY3//AtcFBP GO:0031669 cellular response to nutrient levels BP 0.110890272631414 AtTIR1//ALN//AT3G27150//PIP1;3//VHA-A2//ATATG8E GO:0019932 second-messenger-mediated signaling BP 0.113409483964168 AGL80//scpl29 GO:0006635 fatty acid beta-oxidation BP 0.114412497941124 AT3G49490//AT3G24360//GLI1//ACX5 GO:0042742 defense response to bacterium BP 0.11593344965493 HEMC//PSL4//AT4G38840//ATCYP38//ATNPR1//GLI1//AtEIL1 GO:0022603 regulation of anatomical structure morph... BP 0.117421443831836 LNG1//LNG2//PRK5 GO:0009968 negative regulation of signal transducti... BP 0.119756853035423 AT1G80440//AtRTE1 GO:0010648 negative regulation of cell communicatio... BP 0.119756853035423 AT1G80440//AtRTE1 GO:0023057 negative regulation of signaling BP 0.119756853035423 AT1G80440//AtRTE1 GO:0048507 meristem development BP 0.120158330720826 HAT1//LNG1//ATSPS4F//AT1G22060//DDL//AtMYB106//AT2G22420 GO:0010033 response to organic substance BP 0.123765918306506 ATGOS12//AT4G15430//DIN10//ATBZIP9//ATMYB59//ALNS//SLY2//AT5G38895//SAUR23//AtTIR1//AT3G62550//AT4G38840//BT5//PYR1//ATGLR3.3//DDL//CYP71B22//ATCYP38//ATNPR1//AT1G29450//GLI1//AT1G80440//AT1G49010//AtcFBP//PYL9//ATBPC4//AtHB23//HBI1//AtEIL1//AtRTE1 GO:0019395 fatty acid oxidation BP 0.124216474207934 AT3G49490//AT3G24360//GLI1//ACX5 GO:0070838 divalent metal ion transport BP 0.125427025603873 ATCNGC4//NDH18//ATGLR3.3//CCL//AT3G15690 GO:0072507 divalent inorganic cation homeostasis BP 0.126190211539335 ATGLR3.3//VHA-A2 GO:0015994 chlorophyll metabolic process BP 0.128236053729235 HEMC//AT5G65480//PGRL1B//DEG1//ATCYP38 GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 0.130170834265499 HEMC//AT5G52780//At-NEET//NDH18//G6PD1//DEG1//ATCYP38//PnsL2 GO:0009767 photosynthetic electron transport chain BP 0.130235877298435 PGRL1B//ATCYP38//PnsL2 GO:0072511 divalent inorganic cation transport BP 0.131073833901346 ATCNGC4//NDH18//ATGLR3.3//CCL//AT3G15690 GO:0031667 response to nutrient levels BP 0.132460365805369 AtTIR1//ALN//AT3G27150//PIP1;3//VHA-A2//ATATG8E GO:0097305 response to alcohol BP 0.133708587015154 ATGOS12//AT4G15430//ATMYB59//ALNS//AT5G38895//PYR1//ATNPR1//AtcFBP//PYL9