GOID	TERM	ONTOLOGY	pValue	Genes
GO:0010928	regulation of auxin mediated signaling p...	BP	0.0131593023484488	ABCB2//LCR
GO:0009966	regulation of signal transduction	BP	0.0171866879223235	AT5G56610//ATPK10//ABCB2//LCR
GO:0023051	regulation of signaling	BP	0.0171866879223235	AT5G56610//ATPK10//ABCB2//LCR
GO:0010646	regulation of cell communication	BP	0.020162636393892	AT5G56610//ATPK10//ABCB2//LCR
GO:0010089	xylem development	BP	0.0204055090318277	AT5G53090//AT3G20150//AT1G63520
GO:0044036	cell wall macromolecule metabolic proces...	BP	0.0225255491667299	I14H//AT5G53090//AT4G22110//AT3G20150//AtkdsA1
GO:0010016	shoot system morphogenesis	BP	0.0270050586795576	ATCAO//AT5G58930//TCP17//AT3G61700//AT4G11100//AT1G68780//AtTCP15//AT1G33811//LAX2//LCR
GO:0048367	shoot system development	BP	0.0288496075138672	ATCAO//AT5G58930//DDM2//TCP17//AT3G61700//AT3G57000//ABCB2//AGL24//ATML1//AT4G11100//AT2G33640//ATCOL2//AT1G68780//AtTCP15//AT1G06830//AT1G33811//LAX2//LCR
GO:0006863	purine nucleobase transport	BP	0.036504844345894	ATPUP9//NIP7;1//ATPUP5
GO:0010087	phloem or xylem histogenesis	BP	0.036504844345894	AT5G53090//AT3G20150//AT1G63520
GO:0015851	nucleobase transport	BP	0.036504844345894	ATPUP9//NIP7;1//ATPUP5
GO:0070646	protein modification by small protein re...	BP	0.036504844345894	AT5G16720//HD2C//AT3G57000
GO:0040034	regulation of development, heterochronic	BP	0.0413300703913117	TCP17//AGL24
GO:0010393	galacturonan metabolic process	BP	0.0452030114078916	TBR//AtkdsA1
GO:0043648	dicarboxylic acid metabolic process	BP	0.0452030114078916	LOG6//AT1G14810
GO:0045488	pectin metabolic process	BP	0.0452030114078916	TBR//AtkdsA1
GO:0044038	cell wall macromolecule biosynthetic pro...	BP	0.0452439182936491	I14H//AT4G22110//AtkdsA1
GO:0070589	cellular component macromolecule biosynt...	BP	0.0452439182936491	I14H//AT4G22110//AtkdsA1
GO:0070592	cell wall polysaccharide biosynthetic pr...	BP	0.0452439182936491	I14H//AT4G22110//AtkdsA1
GO:0006354	DNA-templated transcription, elongation	BP	0.047881109597331	YCF5//NDHD//RPS4//RPL15
GO:0090567	reproductive shoot system development	BP	0.0509967817436057	AT5G58930//DDM2//AT3G61700//AT3G57000//ABCB2//AGL24//ATML1//AT2G33640//ATCOL2//AT1G68780//AtTCP15//AT1G06830
GO:0009735	response to cytokinin	BP	0.0682872413246096	AT3G06750//AUF1//AtTCP15
GO:0072521	purine-containing compound metabolic pro...	BP	0.0712279502501648	NDHD//ADK2//CARA//AT1G14810
GO:0009968	negative regulation of signal transducti...	BP	0.075624687538006	AT5G56610//ATPK10
GO:0010648	negative regulation of cell communicatio...	BP	0.075624687538006	AT5G56610//ATPK10
GO:0023057	negative regulation of signaling	BP	0.075624687538006	AT5G56610//ATPK10
GO:0009765	photosynthesis, light harvesting	BP	0.0803865775179393	LHCB2//PSB27
GO:0000338	protein deneddylation	BP	0.0852390917016429	HD2C//AT3G57000
GO:0010388	cullin deneddylation	BP	0.0852390917016429	HD2C//AT3G57000
GO:0043412	macromolecule modification	BP	0.0853845261631188	AT5G11020//AT5G16720//AT5G16130//AT5G56610//AT5G49760//DDM2//HD2C//ATPK10//AT3G57000//AT4G38520//ATML1//AT4G11100//CBL5//AT2G33640//DHAR2//AT3G13690//AT3G20150//CARA//AT3G08660//ATFT4//AtTCP15//AT1G53440//PFC1//AT1G11440//CRR28//AT1G78530//AT2G03750//PSB27
GO:0010051	xylem and phloem pattern formation	BP	0.0860683528846967	AT5G58930//LAX2//LCR
GO:0010383	cell wall polysaccharide metabolic proce...	BP	0.0860683528846967	I14H//AT4G22110//AtkdsA1
GO:0098660	inorganic ion transmembrane transport	BP	0.0892061380927304	NIP7;1//ATZIP4//ATNHX8
GO:0010103	stomatal complex morphogenesis	BP	0.0894944396857672	AT3G61700//AT4G11100//AT1G68780//AT1G33811
GO:0009692	ethylene metabolic process	BP	0.0901780653801017	DIC3//EOL2
GO:0009693	ethylene biosynthetic process	BP	0.0901780653801017	DIC3//EOL2
GO:0043449	cellular alkene metabolic process	BP	0.0901780653801017	DIC3//EOL2
GO:0043450	alkene biosynthetic process	BP	0.0901780653801017	DIC3//EOL2
GO:1900673	olefin metabolic process	BP	0.0901780653801017	DIC3//EOL2
GO:1900674	olefin biosynthetic process	BP	0.0901780653801017	DIC3//EOL2
GO:0009908	flower development	BP	0.0903860862972769	AT5G58930//DDM2//AT3G61700//AT3G57000//ABCB2//AGL24//ATML1//AT2G33640//ATCOL2//AT1G68780//AT1G06830
GO:0048827	phyllome development	BP	0.0937937560008587	ATCAO//TCP17//AT3G61700//ABCB2//AGL24//ATML1//AT1G68780//AtTCP15//AT1G06830//LAX2//LCR
GO:0009451	RNA modification	BP	0.0950463744495067	AT5G16130//HD2C//AT4G11100//CARA//PFC1//CRR28
GO:0044271	cellular nitrogen compound biosynthetic ...	BP	0.0952357092701769	YCF5//NDHD//RPS4//ATCAO//AT5G28300//BEE2//AT5G25470//GATA12//AT5G66770//RPB5C//AT5G49760//DDM2//ASN3//TCP17//ADK2//HD2C//AT3G57030//BBX19//AGL24//ATML1//AT3G20150//AT3G13120//CRF11//RPL15//CARA//AtTCP15//ATSOT16//AT1G14810//EIF2//AtMYB81
GO:0009887	organ morphogenesis	BP	0.0992584507279715	ATCAO//AT5G58930//TCP17//AT3G61700//AT2G33640//AtTCP15//LAX2//LCR
GO:0006261	DNA-dependent DNA replication	BP	0.102225125362678	DDM2//ATUNG//AT3G20150
GO:0009734	auxin-activated signaling pathway	BP	0.105473729647393	ABCB2//LCR
GO:0048825	cotyledon development	BP	0.105473729647393	ATML1//LAX2
GO:0009965	leaf morphogenesis	BP	0.106461743395938	ATCAO//TCP17//AtTCP15//LAX2//LCR
GO:0072522	purine-containing compound biosynthetic ...	BP	0.11245662449472	ADK2//CARA//AT1G14810
GO:0009414	response to water deprivation	BP	0.126238238524213	HD2C//CBL5//LHCB2//ATSOT16
GO:0071365	cellular response to auxin stimulus	BP	0.126844379535544	ABCB2//LCR
GO:0009755	hormone-mediated signaling pathway	BP	0.12782741938284	BEE2//ATPK10//ABCB2//AT3G06750//AUF1//AtTCP15//ATSOT16//LCR
GO:0009415	response to water	BP	0.129077282781455	HD2C//CBL5//LHCB2//ATSOT16
GO:0046777	protein autophosphorylation	BP	0.137743629126845	AT3G13690//AT1G11440//AT2G03750
GO:0048440	carpel development	BP	0.140696691953856	AT3G61700//ABCB2//AGL24//ATML1
GO:0009886	post-embryonic morphogenesis	BP	0.143240158626063	AT5G58930//AT3G61700//AT4G11100//AT2G33640//AT1G68780//AT1G33811//LAX2
GO:0034654	nucleobase-containing compound biosynthe...	BP	0.146443292288937	YCF5//NDHD//RPS4//ATCAO//AT5G28300//BEE2//AT5G25470//GATA12//AT5G66770//RPB5C//DDM2//TCP17//ADK2//HD2C//BBX19//AGL24//ATML1//AT3G20150//CRF11//RPL15//CARA//AtTCP15//AT1G14810//EIF2//AtMYB81
GO:0006470	protein dephosphorylation	BP	0.146658941667897	AT5G56610//AT4G38520//AtTCP15//PSB27
GO:0033993	response to lipid	BP	0.149028742837245	BEE2//HD2C//ATPK10//AGL24//AT3G06750//AUF1//ATSOT16//ARL1
GO:0009736	cytokinin-activated signaling pathway	BP	0.149127242925769	AT3G06750//AUF1
GO:0071368	cellular response to cytokinin stimulus	BP	0.149127242925769	AT3G06750//AUF1
GO:0007623	circadian rhythm	BP	0.149128282836756	GATA12//BBX19//AtTCP15
GO:0048511	rhythmic process	BP	0.149128282836756	GATA12//BBX19//AtTCP15
GO:0048826	cotyledon morphogenesis	BP	0.151539215939301	025_
GO:0048467	gynoecium development	BP	0.152718684371503	AT3G61700//ABCB2//AGL24//ATML1
GO:0001510	RNA methylation	BP	0.152989517810443	AT5G16130//HD2C//CARA
GO:0010413	glucuronoxylan metabolic process	BP	0.154816534467481	I14H//AT4G22110
GO:0045492	xylan biosynthetic process	BP	0.154816534467481	I14H//AT4G22110
GO:0006464	cellular protein modification process	BP	0.155806834022024	AT5G11020//AT5G16720//AT5G56610//AT5G49760//DDM2//HD2C//ATPK10//AT3G57000//AT4G38520//ATML1//CBL5//AT2G33640//DHAR2//AT3G13690//AT3G20150//AT3G08660//ATFT4//AtTCP15//AT1G53440//AT1G11440//AT1G78530//AT2G03750//PSB27
GO:0036211	protein modification process	BP	0.155806834022024	AT5G11020//AT5G16720//AT5G56610//AT5G49760//DDM2//HD2C//ATPK10//AT3G57000//AT4G38520//ATML1//CBL5//AT2G33640//DHAR2//AT3G13690//AT3G20150//AT3G08660//ATFT4//AtTCP15//AT1G53440//AT1G11440//AT1G78530//AT2G03750//PSB27
GO:0006163	purine nucleotide metabolic process	BP	0.156882421818336	NDHD//CARA//AT1G14810
GO:0048583	regulation of response to stimulus	BP	0.157343410677695	AT5G56610//AT5G44580//ATPK10//ABCB2//AGL24//AtTCP15//LCR
GO:0045491	xylan metabolic process	BP	0.160547304051985	I14H//AT4G22110
GO:0071396	cellular response to lipid	BP	0.161984037535155	BEE2//ATPK10//AT3G06750//ATSOT16
GO:0006364	rRNA processing	BP	0.162086204858639	AT5G16130//AT3G13120//LHCB2//PFC1//PSB27
GO:0016072	rRNA metabolic process	BP	0.162086204858639	AT5G16130//AT3G13120//LHCB2//PFC1//PSB27
GO:0032870	cellular response to hormone stimulus	BP	0.162149083767023	BEE2//ATPK10//ABCB2//AT3G06750//AUF1//AtTCP15//ATSOT16//LCR
GO:0006566	threonine metabolic process	BP	0.165377207298386	841_
GO:0010351	lithium ion transport	BP	0.165377207298386	835_
GO:0071495	cellular response to endogenous stimulus	BP	0.165995540402969	BEE2//ATPK10//ABCB2//AT3G06750//AUF1//AtTCP15//ATSOT16//LCR
GO:0034220	ion transmembrane transport	BP	0.168742146746375	NIP7;1//ATZIP4//ATNHX8
GO:0048366	leaf development	BP	0.170179127755446	ATCAO//TCP17//ATML1//AtTCP15//LAX2//LCR
GO:0009740	gibberellic acid mediated signaling path...	BP	0.172122033737308	BEE2//AT3G06750
GO:0010476	gibberellin mediated signaling pathway	BP	0.172122033737308	BEE2//AT3G06750
GO:0009067	aspartate family amino acid biosynthetic...	BP	0.172752738731367	ASN3//LOG6//AT1G14810
GO:0003002	regionalization	BP	0.174648622879782	AT5G58930//AT3G61700//LAX2//LCR
GO:0048437	floral organ development	BP	0.176378162010116	AT3G61700//ABCB2//AGL24//ATML1//AT2G33640//AT1G68780//AT1G06830
GO:0006569	tryptophan catabolic process	BP	0.177960570147413	AT5G49760//ATSOT16
GO:0010048	vernalization response	BP	0.177960570147413	ABCB2//AGL24
GO:0045454	cell redox homeostasis	BP	0.177960570147413	CBSX1//AT1G06830
GO:0046218	indolalkylamine catabolic process	BP	0.177960570147413	AT5G49760//ATSOT16
GO:0071370	cellular response to gibberellin stimulu...	BP	0.177960570147413	BEE2//AT3G06750
GO:0009733	response to auxin	BP	0.178241081818283	AT4G34760//ABCB2//AUF1//ATSOT16//LCR
GO:0006284	base-excision repair	BP	0.178991128312807	798_
GO:0010092	specification of organ identity	BP	0.178991128312807	274_
GO:0010093	specification of floral organ identity	BP	0.178991128312807	274_
GO:0017004	cytochrome complex assembly	BP	0.178991128312807	961_
GO:0035725	sodium ion transmembrane transport	BP	0.178991128312807	835_
GO:0042274	ribosomal small subunit biogenesis	BP	0.178991128312807	503_